>input_sequence_69173
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-----------------------------------------------------------------------------ATG
ACGTTCGGAGGAATCTTTGGCTTGCCCGGCTACATCCTGTTCGGGGACAAAGAGCAGGAGCGAAAGCTGCGGAAGCGAAA
GAAAAAGCTGCAGCGAGAGCGTAAGCTGCGGCTGCGGCAGGAGCGAAAGCTGCGGCAGCGAGAGCAGGAGTTGCAGTGGC
TGCTGCTACGGCAACAACCCAGGCAGCTGCGGGGGACCCAGGGGTTCTCTAGTGAGTCACTGGCAGTCGCTCGGTCGAGC
AACTCAGTGGCAGTCCCTCGTGGGTACGAGCGACAAGGGGCGCATGGGTTCCCTAGTGACTCACGGGCAGTCCCTCGTGG
GTACGAGCCACAGGGGGCGCATGGGTTCTCTAGTGACTCACTGGCGGTCACTCACTCTGTCAACTCACTGGCAGTCCCTC
GTGGTCGTGGGTACGGGCAACTTGGGG------GGCAGGGGTTCTCTAGTGACTCACTGGCAGTCGCTCGCTCGGGCAAC
TCATCGGCAGTCCCTCGTGGGTACGGGCCACAGGATGCACATAAGTTCTT---ACTGGCAGGCCATCGTGGGTACGAGGA
GGAGGACTTCAGCGCCTCCGACGATGAGGACGACGATGATGAGGACGACGATGATGAGGATGACGATGATGCCTTCGAAG
AAGACGACGAGGACGAAGATGATGAGAATGACGAGGAGGTGGAGGAAGGGGAGCACCGCCGGTTGATGCTGCTGACGCTC
CAGCAGCAAGGGGGGCAAGGGGTCCCGCGCGTACACCCGGGGGGGAGACTTGAGTGGCTCTGA-----------------
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>chr7D_1_TraesCS7D01G011500
GTAAATCAGATGGTCTTCAATCCAGCTTTACTCTATCCTCTGACAATATGTACTTCAGTCATATATGTATAACATTACAA
AATTTGCCTCTAACCTGCATAGACCC-ATATACATCAATTCATCCAATGTTGTAATTACCTAAAACCTCCGAAAGGATAT
GATATGATATTTGAAGACACTACGACGTTTATGAAAGTACTTCATTGCTCGAAATTGTATGTCCAAATTTATTGAATTAT
TTTGGGTAGGTTTCATATTTTCAATTAGGTAAATAAATACACTACTTATGATTATTACTTTATTATAATCTAATTTATTG
AAGCCAAAATGACTAGCTTTAGAAGTAATATTTAAAAAGTTTGAATCATCATATAATTATTAGAACATTAAGATGTTGCC
CGTGCATTTGGGCAGGCCACCCTCCAAGTTTATGTAATAGTGCATGTGCATCTTAAGGCAGAGATTTGGCTATTTTTT-A
TAAGTAGTGTACATACTAAGGTGAGTGAGGATTTTTGGGTCTCAAATTCATTTGAGCTTGGGATCTAAATTTCTTGAAAA
CCACACTCAAAAACCAC-------------------ACACAAGTAAATACTTTGTAAAT--------------CTTTCAC
TGAAAAACTTTCAAATTTACGCCCTGTGTGAAAAATATTAGTTTGGTAAAA-AAACCAAGGCTCAAATGTGCCCAAGATA
CATCTGGGGTTTCGGTGCTGAAATATAATAACTGGATAAGAATTACTTCTAGGTAATTAGCAATTAAGAAAAGAATAGAA
TCTTTGCTTTTATCAATCATAGGTCACATATGGCATACGAATAGGATCATTTACATGGTTAGGACGATATACCTTCCCGG
ATGGACTAGAATAAAATGCTAAAGCAAACATATGGGAGCACAAATGCTCTCACTTGCACCCACGGCAGGGCAGCTAACTC
ACGCCTATATATAAAGCCAATCCATACAAAGCAATGCACACAAGTCATAGATAGATAACCAAG-CAGACAGTTAGCAATG
ACGTTCGGAGGAATCTTTGGCTTGCCCGGCTACATCCTGTTCGGGGACAAAGAGCAGGAGCGAAAGCTGCGGAAGCGAAA
GAAAAAGCTGCAGCGAGAGCGTAAGCTGCGGCTGCGGCAGGAGCGAAAGCTGCGGCAGCGAGAGCAGGAGTTGCAGTGGC
TGCTGCTACGGCAACAACCCAGGCAGCTGCGGGGGACCCAGGGGTTCTCTAGTGAGTCACTGGCAGTCGCTCGGTCGAGC
AACTCAGTGGCAGTCCCTCGTGGGTACGAGCGACAAGGGGCGCATGGGTTCCCTAGTGACTCACGGGCAGTCCCTCGTGG
GTACGAGCCACAGGGGGCGCATGGGTTCTCTAGTGACTCACTGGCGGTCACTCACTCTGTCAACTCACTGGCAGTCCCTC
GTGGTCGTGGGTACGGGCAACTTGGGG------GGCAGGGGTTCTCTAGTGACTCACTGGCAGTCGCTCGCTCGGGCAAC
TCATCGGCAGTCCCTCGTGGGTACGGGCCACAGGATGCACATAAGTTCTT---ACTGGCAGGCCATCGTGGGTACGAGGA
GGAGGACTTCAGCGCCTCCGACGATGAGGACGACGATGATGAGGACGACGATGATGAGGATGACGATGATGCCTTCGAAG
AAGACGACGAGGACGAAGATGATGAGAATGACGAGGAGGTGGAGGAAGGGGAGCACCGCCGGTTGATGCTGCTGACGCTC
CAGCAGCAAGGGGGGCAAGGGGTCCCGCGCGTACACCCGGGGGGGAGACTTGAGTGGCTCTGATGACGCTGCAAGCAACA
GCCGCCGGCGGCACTGTCACTCCTGCCGCAAGTGTGGCAAACAGCAGTGCAGGAGTGGCACTACCTATACGTATATAAAT
TATGGTG-CGTACTAGTATATGTTTGCTGTCTGCATGCATGCAGCCTCACCCGTGGATGCCACGGGTGTCGATTTAAATA
AATAATCCTCCTAGTGTCTGTAACTAAATCCAAGTAATTTGTACTCGCGATGTATGGACGATGCTCTGCATCCACTCTAT
TGTGCCTG--TAACACTTCACCCTGTGTCGAACCTAGTGATTCCGTACGTGTGTGCATGGATAGTGGATGACCTCATTGG
CGCTTACTACCTATCTACTACCTTCGTACCAAAATACTTGTAGCTGGGGAAACTAATACAAGTTCCTCCAACTATAAGTA
TTTCGTTACAGAGCGAGTAGTATATAAATTATGGTACA------------------------------------------
-------------------------------------------------------TATATTTTTGCTGTGTGTATGCATG
CAGTCTCACCTGTGGATACCACGTGTAATGGACTGCGATTTAAATAAATATTCCTCAT---AGTATGTGTAATTAAATCC
-AAGTAAATTGTACTCCCGGTAAATAAATCCTGCTTATGTGTGTGTGTACCAAGCTTAAATTTGCTTTGCTAGATCGAGT
TGATGATCTAGCTAGGTA--------------------------------------------------------------
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-----------------------------------AAGATGTAAGTGGGTACGGGGCGATGAATTGATTTTACGGCTTCT
GCTGGTGTTATTGGTTTTTTGAAAAAGGGTGAACATCATTATCTCAAAATGAAGCATTAATAGAATACAAACACGATGAG
CACATACCCAGCCTCTGCATAGTTAGGATGCACATAACCAAACCTGTCTGCTGGTGTTATTGGTTGGTGTCAAGCCTGTT
TGTATAACACATCATCTTGGGTCACGTGTCAAGGGTTGGTGGGTCAGCGCTCAGCGGGAGATATAAAAGAGGAAGGAAGA
AGCAACACTAGGTGAGAACCGAACTATCCCCTCTCCTGCATCTTACCGAACAGAAGAGAATCAG
>chr7A_1
GTAAATCAGATGGTCTTCAGTCCAGCTTTACTCTAGCCTCTAATAATATGTACTTCAGTCATATATGTATAACATTACAA
CATTTGCCTCTAACCTGCATAGACCC-ATATACATCAATTCATCCAATGTTGTAATTACCTAAAACCTCCGAAAGGATAA
GATATGATATTTGAAGACACTACAACATTTATGAAAGTACTTCATTGCTCGAAATTGTATGTCCAAATTTATTGAATTAT
TTTGGGTAGGTTTCATATTTTCAAATAGGTAAA----CACACTACTTATGATTGTTACTTTATTATAATCTAATTTACTG
AAGCC-AAATGACTAGCTTTAGAAGTAATATTTAAAAAGTTTGAATCGTCATATAATTAGTAGAACATTAAGATGTTGCC
CGTGCATT----CAGGTCACCCTGCAAGTTTATGTAATAGTGCATGTGCATCTTTAGGCAGAGATTTGGCTATTTTTT-A
TAAGTAGT--ACATACTAAGGTGAGTGAGGATTTTTGGGTCTCAAATTCACTTGAGCTTGGGATCTAAGTTTCTTGAAAA
CCACACTTAAAAATTTGGAAATTGCTGAAAACATTTACACAAGTAAATACTTTGTAAAT--------------CTTTCAC
TGAAAAACTTTCAAGTTTACGCCCTGTGTGAAAAATATTAGTTTGATAAAA-AAACCAAGGCTCAAATGTGCCCAAGATA
CATCTGGGGTTTGGGTGCTGAAATATAATAACTGGATAAGAATTACTTCTACGTAATTAGCAATTAAGAAAAGAATAGAA
TCCTTGCTTTTATCATTCATAGGTCACATATGGCATACGAATAGGATCATTTACATGGTTAGGATGATATACCTTCCCGG
ATGGACTAGAATAAGATGCTAAAGCAAACATATTGGAGCACAAATTCTCCCACTTGCACCCACGGTAGGGCAGCTAACTT
GCGCCTATATATAGAGCCAATCCATACAAAGCAATGCGCACAAGCCATAGATAGATACCTATAACAGATAGTTAGCAATG
ACGTTCGGAGGAATCTTTGGCTTGCCCGGCTACATCCTGTTCGGGGACAAGGAGCAGGAGCGAAAGCTGCGGAAGCGAAA
GAAAAAGCTGCAGCGAGAGCGTAAGCTGCGGCTGCAGCAAGAGCGAAAGCTGCGGCAGCGAGAGCAGGAGCTGCAGTGGC
TGCTGCTACGGCAACAACCCCGGCAGCCGCGGGGGACGAAGGTGTTCTCTAAAGAATCACTGGCAGTCGCTCGTTCGAGC
AACTCAGTGGCAGTCC---------------------------------------------------------CTCGTGG
GTACGAGCGACAGGGGGCGCATGGGTTCTCTAGGGACTATTTGCCGGC---------------CTCAGTGGCAGTCCCTC
GTGATCGTGGGTACGGGCAACTTGGGGGGCAGGGGCAGGGGTTCTCTAGTGACTCACTGGCAGTCGCTCGCTCGGGCAAC
TCATCGGCAGTCCCTCGTGGGTACGGGCCACAGGATGCACATAAGTTCTT---ACTGGCAGGCCATCGTGGGTACGAGGA
GGAGGACTTCAGCGCCTCCGACGATGAGGACGACGAC---GAGGACGACGATGATGAGGATGACGAGGATGCCTTCGAAG
AAGACGACGAGGACGAAGATGATGAGAATGACGAGGAGGTGGAGGAAGGGGAGCACCGCCGGTTGATGCTGCTGACGCTC
---CAGCAAGGGGGGCAAGGGGTCCCACGCGTACACCCAGGGGGGAGACTTGAGTGGCTCTGATGACGCTGCAAGCAACA
GCCGCCGGCGGCACTGTCACTCCTGCCGCAAGTGTGGCAAACAGCAGTGCAGGAGTGGCACTACCTATACGTATATAAAT
TATGGTATCGTACTAGTATATGTTTGCTGTCTGCATGCATGCAGCCTCACCCGTGGAGTG---------TGATTTAAATA
AATAACCCTCCTAATGTCTGTAACTAAATCCAAGTAATTTGTACTCCCGATGTATGGACGATGCCCTGCATCCACTCTAT
TGTGCCTGTATAACACTTCACCCTGTGTCGAACCTAGTGACTCCGTACGTGCGTGCATGGATAGTGGATAACCTCATTGG
CGCTTACTACCTACCTATATACTTCCTCCGTTTT----------------------------------CAAATATAAGTC
TTTCTAGAGATTTCAACAAATGACTACATACGAAGTAAAATGAGTGAATCTACACTATAAAATATGTCTACATACATCCG
TATGTTGTAGTCCATTTGAAATGTCTAAAAAACTTATATTTAGGAACGGAGGGAGTAAATTTTTGCTGTGTGCATGCATG
CAGTCTCAC-TGTGGATGCCACATGTAATGGACTGCGATTTAAATAAATATTCCTTGTACAAGTATGTGTAATTAAATCC
-AAGTAAATTGTACTCCAGGTAAATAAATCCTGCTTATGTGTC--TGTACCAAGCTTAAATTTGCTTTGATCGATCGAGC
TGATGATCTATCTAGAGTGAAATGCTCCACCAGTCCATGTGGCCGGTTTTTCTCCTCTCTAATTGGTTTTGGCCTTATTT
GATCAAATAAACGAGTTTGTGGACTAAATCTGATCACTTTCTGAGTTGATGGCTTAAAGTGTGTAATCAATTTGAGTTTA
TGGACTAGTGGCGCATTTCACTCATCTAGCTAGGTAAGATGTAAGTACGTACAGGGCGATGAATTGATTTTACGGCTTCT
GCTGCTGTTATTGGTTTCCTGAAAAGGGTGAATTTT--------------------------------------------
---------------------GTTAGGATGCAACCG----AACCTGCCTCCTGGTGTTATTGGTTGGTGTCAAACCTGTC
TGTATAACACATCATCTTGGGTAACGTGTCAAGGGATGGTGGG-------TCAGCGGGAGATATAAAAGAGGAAGGAAGA
AGCAACACTAGGTGAGAACCGAACTA-CCCCTCCCCTGTATCTTACCGAACAGAAGAGAATC--
>chr4A_1
GTAAATCAAATGGTCTTCGATCCAGCTTTACTCTAGCCTCTGATAATATGTACTCTAGTCATATATGTATAACACTACAA
TATTTGCCTCTAACCTGCATAGACCCCATATACATCAATTCATCCAAAGTTGTAATTATCTAAAGCCTCTAAAAGGATAT
GATATGATATTTGAAGACACTACAACGTTTATGAAAGTACTTCACTGCTCAAAATTTTATGTCCAAATTTATTAAATT-T
TTTGGGTAGGTTTCATATTTTCAGCTAGGTAAA----TACACTACTTATGATTATTACATTATTATAATCTAATTTACTG
AAGGCAAAATGACTAGCTTTAGAATTAATATTTGAAAAGTTTGAGTCGCCGTATAATTAGTAGAACATTAAGATGTTGCC
CGTGCATTTGGGCAGGCCACTCTCCAAGTCTATGTAATAGTGCAAGTGCATCTTAAGGCAGAGATTTGGCTCTTTTTTTA
TAAGTAGT--ACATACTAAGGTGAGTGAGCATTTTTGGGTCCCAGATTCGTTTGAGCTTGGGATCTAATTTTCTTGAAAA
CCACACTTGCAAAATTGGAAATTTCTGAAAACATTT--ACAAGTAAATACTTTGTAAAGCTTCCATTGACAAACTTTCAC
TGAAAAACTTTCAACTTTACGCCCTGTGTGAAAAATATTAGCTTGATAAAAAAAACCAAGGCTCAAATTTGCCCAAGATA
CATCTGGGGTTTCGGTGCTGAAATATAATAACTGGATAAGAATTACTTCTAGGTAATTAGCAATTAAGAAAAGAATAGAA
TCTTTGCTTTTATCAATCATAGGTCACATATGGCATACGAATAGGATCATTTACATGGTTAGGACGATATACCTTCCCGG
ATGGACTAGAATAAAATGCTAAAGCAAACATATGGGAGCACAAATGCTCCCACTTGCACCCATGGCAGGGCAGCTAACTC
GCGCCTATATATAAAGCCAATCCATACAACGCAATGCACACAAGCCATAGATAGATAACCAAG-CAGACAGTTAGCAATG
ACGTTCGGAGGAATCTTTAGCTTGCCCGGCTACATCCTGTTCGGGGACAAGGAGCAGGAGCGAAAGCTGCGGAAGCGAAA
GAAAAAGCTGCAGCGAGAGCGTAAGCTGAGGCTCCGACAGGAGCGAAAGCTGCGGCAGCGAGAGCAGGAGCTGCAGTGGC
TGCTGCTACGGCAACAACCCGGGAAGCTGCGGGGCACGCAGGGGTTCTCTAGTGAGTCACTGGCAGTCGCTCGTTCGAGC
AACTCAGTAGCAGTCC---------------------------------------------------------CTCGTGG
GTACGAGCGACAGAGGGCGCATGGGTTCTCTAGTGACTCACTGGCGCTCGCTCACTCGAGCAACTCACTGGCACTCCCTC
GTGTTCGTGGGTACGGGCAACTTGGGGGGCAGGGGCAGGGGTACTCTAGTGACTCACTGGCAATCGCTCGCTCGGGCAAC
TCATCGGCAGTCCCTCTTGGGTACGGGCCACAGGATGCACATAAGTTCTCCTCACCGGCAGTCCCTCGTGGGTACGAGGA
GGAGGACTTCAGTGCCTCCGACGATGAGGACGACGAC---GAGGACGACGATGATGAAGATGACGATGATGCCTTCGAAG
AAGACGACGAGGACGAAGATGATGAGGATGATGAGGAGGTGGAGGAAGAGGAGCACCGCCGGTTGATGCTGCTGACGCTC
---CAGCAAGGGGGGCAAGGGGTCCCGCGCGTACACCCAGGGGGGAGACTTGAGTGGGTGTGATGACGCTGCAAGCAACA
GCCGGCGGCGGCACTGTCACTCCTGCCGCAAGTGTGGCAAACAGCAGTGCAGGAGTGTCACTACCTATACGTACATAAAT
TATGGTA-CGTACTAGTATATGTTTGCTGTCTGCATGCAGGTGAGGC------TGGAGTG---------CGATTTAAATA
AATAATACTCCTAGTGTCTGTAACTAAATCCAAGTAATTTGTACTCCCGATGTATGGACGATGCTCTGCATCCGCTCTTT
TGTGCCTGTATAACACTTCACCCTTTGTCGAACCTACAGACTCCGATTTGT-----------------------------
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----------------TGCCACGTGTGATGGACTGCGATTTAAATAAATATTCCTCAT---AGTATGTGTAATTTAAATA
GAAGTAAATTCTACTCCCGGTAAATAAATTCTGCTTATGTTTGTGCGCGCCAAGCTTAAATTTGCTTTGATCGATCGAGC
TGATGATCTAGCTACAGTGAAATGCTTCACTAGTCCATGTGGCATGTTTTTCTCCTCTCTAATCAGTTTTGGCCTTATTT
GATCAAATGAACAAGTTTGTGGACTAAATATGATCACTTTCTGAGTTGATGGCCTAAC----------------------
---------GGCGCATTTCACTCATCTAGCAAGGTAAGATGTAAGTACGTACGGGGCGATGAATTGATTTCACGGCTTCT
GCTGGTGTTATTGGGTTTTTGAAAAAGGGTGAATTTTATTAGCTTAAAATGAAGCATTAAGATAATACAAACACGATGAG
TACACACCCGGCCTCTGCATAATTAGGATGGACACAACC-AAACTGTCTGCTGGGGTTATTGGTTGGTGTCAAACCTGTC
TGTATAACATATCATCTTGGGTCACGTGTCAAGGATTGGTGGT-------TCAGCGGGAGATATAAAAGAGGAAGGAAGA
AGCA------------------------------------------------------------
>SNPs
-----------------------------------S-------S------------------------------------
S-------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
------------------------S--------SSSS----------------------------------------S--
-----------------------------------------------S-----------S--------------------
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--------SS----------------------------------------------------------S-----------
-------S-----SSSS---------------------------------------------------------------
--------------S------------------------------S----------------------------------
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-------------------------------------------------S------------------------------
S-------------------------------------------S-----------------------------------
--------------------------------------------------S-----------------------------
----------------------------------------------------------------------S---------
--------------------S----------------S-----------------------------------S------
----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
--------S----------------------------------------S-------SSS--------------------
---S----------------------------------------------------------------------------
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------------------------------------SSSS----------------------------------------
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SSS-----------------------------------S-----------------------------------------
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------S--------------------------------------------------SSSSSSSSSSSS-----------
----------------------------------------------S---------------------------------
----------------------------------------S----------S-----------------S----------
-------------S---SSSS----S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------S
----SSS-S-SSS-S-SS-S-SSS--S--SSSSSSSS-------------------------------------------
---------------------------------------------------------S--------------S-------
---------S-------S--------------------------------------------------------------
---------------------------------------------------------------------S-S-------S
---------------SSS--------------------------------------------------------------
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----------------------------------------------SS--------------------------------
---------------------------------SS-S----S--S---------------S-S-----------------
S---S----S------------------------S----S---------------------------------S-----S
-------------------------------------------SSSSSSS------------------------------
--------------------------S------S----S-----------------------SS
>forward_961
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---------------------------------------------------------------GGCAGGGCAGCTAACTC
A-------------------------------------------------------------------------------
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>reverse_1978
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---------------------------------------------------------TGCCACGGGTGTCGATTTAA---
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