>input_sequence_69165
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---------------------------------------------------------------------------ATGGC
GGGGGCTGAATCCGCATTACCTGCCGTAGATCATGTGGTGCTGGATAATAGCGACACTGAAGTCTCAGAAGTCGTGGAAT
GTGATTCCACAGTTGTAGATGTGCTGAAGAAGAGTGCCAGTAAAGAATTTGGTTTGCAACTTCCCTTGGGAAACAAGGAA
GACATAGAATCCCTTGGCACAGTTTGTGATCTTGAGAATAACGAGGGTAATGTTGCTGAGGCAACCACTCTGAATGTGGT
TGCACTAGAAATGTCCATCTCTAGCAAGGTTTCAGATGAAAGTATTTCACTGGGCTGTCAAACACCAAGGGGAAACATCT
TTGACCCCTTTGCTCCAGGACCAGAGGAGGTGCTCTGCGGTGCGCCGAAGAAGAACGTGGTTAGGGGAGTAGAGACCCTC
TCCCGCAGAAAGCTCATTTTTGAATCTGATGACTTCCCAGTCAAGAGGTTAAGCTTTGAGTTTGATGATTCGGAGGAGGA
AGATCTGTATCTCCAGGGCATCTGCAAGATGTTTCTTGATCTGATCATCTCAAACCAAGCGCTGGAGGCAACTGGAGATG
GGGAGGCTGTTCTGATAGATGCTGCTATCCCATCTGAAAGCTACAAGACTCCTGAATCGAAGCCTCTGCTTACCGGCATC
GCGGACACCTGCCCGGATGCTCCTCTGCGACCATCTCTGAAGATGATCAAGCTCAGCCCAGGCATCTGCCGGAAGCTCGA
CTTCGGTTCTGTGAGTCCCAAGACTCTTTTCGCTGAAGACAATAAGAGCTGA----------------------------
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>chr5B_1_TraesCS5B01G144400
CCCAGTTCCCCACTGCTCCTCTCCATCTCCTCTGTCTCCCTCGATCCGCGCCGCAGCTGCCCCCCTGCTCT----CCTCC
ACCAGAGCAGCGCCGCCAGCC-GACGCCCTCCCTCTCTTCTCCATCCGTCCATCCCTCGTCGAGCCAAGCTGGGAGTGCT
GCGGGGGGATCTCGGGGATGTTAATCGGCGACCAATCTTCGGCCGAATCAAGATAGAAACAGGTATCGTGCCCTTTCCCC
TCGCAGATCTGGTTCCGGTGTTCCTCATTTCGCCTGTTCCGCTGTCCAATCTATCGTGTATGCAATTGTTCTCTCCGATT
GATAAGTTGCCACTAGGCGTTCGCGAGGTAATTGCCAGGCTTTGATTT----------------GACCGTGCAATTCTTC
ATGTATTGCGATATTAGGGATGCGTGTTTCTGAAATACTTTTGGTTTAGCGAATCAACTAATCTGGGGAACTGTGGTCAT
AAGGATGCCGACAATTGCTGTGCGACTCACGTCTACGTAGGTGTAGTACATATATCTTCAGTCTCGATTCTGTAATGTAT
ATGAAGCATAGTTGCAGATCAGCTTAATTTTATATTAGATGATTGTTTTTGGAAGGATGATGTAATTTTGTC----TAGA
TGATGTAATGTTTTTTTATCTCAAGCACGC-----CCGGAAGCTCGTCTTTGCATCAACAGGATGACGTAATGTAGCAAT
CTGAATTCTGAAAGCGTTCTGTTCCAAATGTATGTTCTGCTGCTGCTGCTGTCACTTCTTTTGTGACTGTGCACCCTGTT
TATTCTGAAATTGTCCAACCTTTAAATATTTTACCGAGTGGCAGGATCCTTTTGCA---CTCCTTTTTGTTGTGTAGTTC
TGTGAAATGTCTTTTGTTATTTATTTGGTAGTTTTTGGTAGTATCTACCGTTATACTGACCTTTTCTTTGTTGCAGGTTT
TGATACTGAAGT--GGGAGAGTGGTATAGTCTGTTTGAGTATAACATTTATTTTCAGAAGAAACCACTTCTCCACATGGC
GGGGGCTGAATCCGCATTACCTGCCGTAGATCATGTGGTGCTGGATAATAGCGACACTGAAGTCTCAGAAGTCGTGGAAT
GTGATTCCACAGTTGTAGATGTGCTGAAGAAGAGTGCCAGTAAAGAATTTGGTTTGCAACTTCCCTTGGGAAACAAGGAA
GACATAGAATCCCTTGGCACAGTTTGTGATCTTGAGAATAACGAGGGTAATGTTGCTGAGGCAACCACTCTGAATGTGGT
TGCACTAGAAATGTCCATCTCTAGCAAGGTTTCAGATGAAAGTATTTCACTGGGCTGTCAAACACCAAGGGGAAACATCT
TTGACCCCTTTGCTCCAGGACCAGAGGAGGTGCTCTGCGGTGCGCCGAAGAAGAACGTGGTTAGGGGAGTAGAGACCCTC
TCCCGCAGAAAGCTCATTTTTGAATCTGATGACTTCCCAGTCAAGAGGTTAAGCTTTGAGTTTGATGATTCGGAGGAGGA
AGATCTGTATCTCCAGGGCATCTGCAAGATGTTTCTTGATCTGATCATCTCAAACCAAGCGCTGGAGGCAACTGGAGATG
GGGAGGCTGTTCTGATAGATGCTGCTATCCCATCTGAAAGCTACAAGACTCCTGAATCGAAGCCTCTGCTTACCGGCATC
GCGGACACCTGCCCGGATGCTCCTCTGCGACCATCTCTGAAGATGATCAAGCTCAGCCCAGGCATCTGCCGGAAGCTCGA
CTTCGGTTCTGTGAGTCCCAAGACTCTTTTCGCTGAAGACAATAAGAGCTGAGCCTGT-----TCCTTTGGGAACATGGT
CTTGGTGCGTTTCTCTTGGCATCCTACAGAGGCATGTCTGTCAGTGGTAACTTTGCTAACTCTGAAGCTGTACAGAGCTA
GCAGTGATGCTTGAGTAGGAAGCAGCC----TTAAGTTATACATGTAAAATCTATGTTTAGTTTTCATTTAATTTTAGCT
AAGCCCAGTCTTACTGCCCTGATTGATCATTGATGTAGTAGTACCAGCACATGTGCCTTGTGGGCTTTCGGCCTAGCGTT
TTGTAAATCTTGAAAAATAGTTTGTTGTCTCTCTGTGCTTGCCTTGAACTTAAGGAACTGTTGCAGATTCATCTTTGCTT
GGCTTTC---CTTTGCACTTGGATGTAATACTCTCTTGTGACACCGAAATGACGCAGTGGCGAATTCGAACACGGCTT--
---GGTTTGATGCGACTGGTGTAGGGTGAGCTGCTGGCGTACTAGTAGTGTTAATTGTGCCGAGCTGTAATTCATCTGCC
TTATTAATCGTGCTGGTCTGTCATGATGATTGATGGCTGCTCTTCCTGTTAATTTTAGCCGTCAGATAGAGCTTCTGATG
GACTGGCTGACGGCCTCGATTTATCCCTGGCATTTGTATCCTTTTTCGTCCCCTTTGTGAGGAAAAGGGGAGCTTTCATT
GATCAGAGGAAACAGGACTAGAAACAGGGTTTATTTTTCACTGCTTATGTTTGTTTGACTT-TATTTGCCGACATATTTG
GTGGCATCACGAATCCACCATATTGTAACCTAAAAATTACTTTCAGCACAGGTGGCTTTTTTTGAACTTTCAGCACAGGT
GGTCTGGCTTGGCTTTAGAGGATTATGT---AGAGTAATCAGAACATCAAGCACTCGAGGAAGGTCTCCGAGCGACCCCG
TAACAGCAAGCTATATATAAGCATAATATAAGATGAGGCCGTGCTTAGGATTCGTGCGCACTAAGCAAGAATCTAAACAC
--------ATGATGATGATGTGATGAACAATAAGAGCAAGC
>chr5A_1
CCCAGTTCCCCATTGCTCCTCTCCATCTCCTCTGTCTCCCTCGATCCGCGCCGCAGCTGCCCCCACCGCCCTCCGCCTCC
ACCGAAGCAGCGCCGCCAACC-GACGCCCTCCCTCTCTTCTCCGTCCGTCCATCCCTCGTCGAGCCAAGCTGGGAGTGCT
G--GGGGGATCTCGGGGATGTTAATCGGCGACCAATCTTCGGCTGAATCAAGATAGAAACAGGTATCGTGCCCTTTCCCG
TCGCAGATCTGGTTCCGGTGCTCCTCATTTTGCCTGTTCCGCGGTCCAATCTATCGTGTATGCAATTGTTCTCTCCGATT
GATAAGTTGCTATTAGGCGTTCGCGAGGTAACTGCTAGGCGTTGATTTGTCGTAGCATCTGCACGACCGTGCAATTCTTC
ATGTATTGCGAAATTAGGGATGCGTGTTTCTGAAATACTTTTGGTTTGTCGAATT-ACTAATCTGGGTTACGGTGGTTAT
TAGCATGCCGCCAATTGCTGTGCGGCTCCCGTCTACG----CGTAATCCATATATCTTCA---TCGATTCTGTAATGTAT
ATGAAGCATAGTTGCAGATCAGCTTAATTTTTTCTTAGAT---T-TTTTTTGCAGGATGATGTAATTTTGTCTTCTTAGA
TGATGTAATGTTTTTTTAATCTAAAGCACATATGGCCTGGAGCACGTCTTTGCATTAATAAGATGACGTAATGTTGTAAT
CTGACTTCTGAAAGCGTCCTGTTCCAATTGTATGTTCTGCTGCTGCCGCTGTCACTTCTTTTGTGACTAGGC-CCCTGTT
TATTCTGAAATTGTCCAACCTTTAAATATTTTACCGAGTGGCAGGATCCTTTTGCA---CTCCTTTTTGTTGTGTAGTTC
TGTAAAATGTCTTTTGTTATTTATTGAGTACTTTATGTTAGTATCTACCGTTATACTGACCTTTTCTCTGTTGCAGGTTT
TGATACTGAAGTCTGGGGGAGTAGTATACTCTGTTTGAGTATACCATTTAGTTTTGGAATAAACCACTTCTCCACATGGC
GGGGGCTGAATCCGCACTACCCGCAGTTGATCATGTGGTGTTGGATAACAGCGATACTGAAGTCTCAGAGGTCGTGGAAT
GCGATTCCACAGTTGTAGAAGTGCTGGACAAGAGTGCCGGTGAAGAAGTTCGTCTGCAATTTCCCTTGGGAAATAAGGAA
GATGTAGAATCCCTTGGCACAGTTTGTGATCTTGAGAATAATGAGGGTAATGTTGCTGAGGCAACCACTCTGAATGTGGT
TGCACTAGAAATGTCCATCTCTAGCAAGGTTTCAGATGAAAGTATTTCACTGGGTTGTCAAACACCAAGGGGAAACATCT
TTGACCCCTTTGCTCCAGGACCAGAGGAGGCGCTCTGCGGTGCGCCGAAGAAGAACGTGGTTAGGGGAGTAGAGACCCTC
TCCCGCAGAAAGCTCATCTTTGAATCTGATGACTTCCCAGTCAAGAGGTTAAGCTTTGAGTTTGATGATTCAGAGGAGGA
AGATCTGTATCTCCAGGGGATCTGCAAGATGTTTCTTGATCTGATCATCTCAAACCAAGCGCTGGAGGCAACCGGAGACG
GCGAGGCTGTTCTGATAGATGCTGCCATCCCACCTGAAAGCTACAAGACCCCTGAATCAAAGCCTCTGCTCACCGGCATC
GCGGACACCTGCCCGGACGCTCCTCTGCGGCCATCTCTGAAGATGATCAAGCTCAGCCCGGGCATCTGCCGGAAGCTCGA
CTTCGGTTCGGTCAGCCCCAAGACTCTTTTCGCTGAAGACAATAAGAGCTGAGCCTGTCCCCATCCTTGGGGAACATGGT
CTTGGTGC---------GGCATCCTACAGAGGCATGTCAG-C-GTGGTGACTTTGCTAACTCTGAAGCTGTACAGAGCTA
GCGGTGATGGTTGAGTAGGAAGCAGCCTTGATTAAGTTATACATGTAAAATCTATGTTTAGTTTTCCTTTGGTTTTAGCT
AAGCCCAGTCTTACTGCCCTGATTGATCATTGATGTAGTAGTACCGGCTCATGTGCCTTGTGGGCTTTCGGCCTAGCGTT
TTGTAAATCTTGAAAAATAGCTTGTTGTCTCTCTGTGCTTGCCTTGAACTGAAGGAACTGTTGCAGATTCATCCTTGCTT
AGCTTTTTATCTTTGCACCT------------------TGACACCGAAATGATGCAGTGGCGAAATCGAACATGGCTTGG
CTTGGTTTGATGCGACTGGTGTAGGGTGAGTTGCTGGCGTACT---GGTGTTAATTGTGCTGAGCTGTAATTCATCTGCC
TTATTAATTGTGCTGTCCTGTCACGATTAGTGATGGCTGCTCTTCCTGTTAATTTTAGCCGTCAGATAGAGCTTCAGATG
GATTGGCTGACGGCCTCGATTTGTCCTTGCCTTTGATACCCTTTTTCGTTCCCTTCGCGAGGAAAAGGGGAGCTTTCATT
GATCAGAGGAAAAAGGACTACACACAGGGTTTATTTTTCACTGCTT--GTATGTTTGACCTGTATTTGCCGACATATTTG
GTGGCATCACGAATCCACGATGTTGTAACCTGAAAATTACTTTCAGCACAGGTGACAGG---------------------
----TGGCTTGGCTTTAAGGATTATATATAGAGAGTAATCAGAGGATCAAGTGCTCGGGGAAGGCCTCGAAGCGACCCCG
TAACAGCAAGCTATATA--AGCATAATATAGGATGAGGTCGTGCTTAGGATTCGTGCGCTCAAAGCAAGAATCTAGACAC
ATGATGTGATGATGATGATGTGATGAACAATAAGAGCAAG-
>chr5D_1
CCCAGTTCCCCACTGCTCCTCTCCATCTCCTCTATCTCCCTCGATCCGCGCCGCAGCTGCCCCCACTG--CTCCGCCTCC
ACCGAAGCAGCGCCGCCAGCTTGACGCCCTCCCTCTCTTCTCCGTCCGTCCACCCCTCGCCGAACCAAGCTTGGAGTGTT
G--GGGGGACATCGGGGATGTTAATCGGCGACCAATCTTCGGCTGGATCAAGTTAGAAACAGGTATCGTGCCCTTCCGCT
TCGCAGATCTGGTTCCGGTGTTCCTCATTTTGCCTGTTCCGCGGTCCAATCTATCGTGTACGCAATTCTTCTCTCCGATT
GATAAGTTGCTACCAGGCGTTCGTGAGGTAATTGCTAGGCTTTGATTTGTTGTAACACCTGCACGACCGTGCAATTCTCC
ATGTATTGCGAAATTAGGGATGCGTGTTTCTGAAATACTTTCTATTTGCCGAATT-ACTAATCTGGGGTACTGTGGTTAT
AAGGATGTCGCCAATTGCTGTGCGGCTCCCGTTTACG----TGTAGTCCATATATCTTCA---TCGATTCTGTAATGTAT
ATGAAGCATAGTTGCAGATCAGCTTAATTTTGTCTTAGATGATT-TTTTTTGCAGGATGATGTAATCTTG---TCTTAGA
TGATGTAATGTTTTT--ATCTCGAGCATGC-----CTGGAAGCACGTCTTTGCATCAATAGGATGACGTAATGTTGTAAT
CTGAA-----------------------------TTCTGCTGCTGCTGCTGTCAGTTCTTTTGTGACCGAGCATCGTGTT
TATTCTGAAATCGTCTTTTGTGTATAGTTCC-ACCCAGTGGCAGGATCCTTTTGCGCCCCCCTTTTTTTGTGTATAGTTG
TGTAAATTGTCTTTTGTTATTTATTGAGTAGTTTATGGCAGTATCTACCCTTGTACTGACCTTTTCTTTGTTTCAGGTTT
TGATACTGAAGT--GGGAGAGTGGTATACTCTGTTTGAGTATAACATTTATTTTCAGAAGAAACCACTTCTCCACATGGC
GGGGGCTGAAGTAGG---------------TCATGTGGTGTTGGATAACAGCGATACTGAAGTCTCAGAGGTTGTGGAAT
GCGATTCCACAGTTGTAGAAGTGCTGGAGAAGAGTGCCAGTAAAGAATTTGGTTTGCAACTTCCCTTGGGAAACAAGGAA
GACATAGAATCCCTCGGCACAGTTTGTGATCTTGAGAATAACGAGGGTAATGCTGCTGAGGCAATCACTCTGAACGTGGT
TGCACTAGAAATGTCCATCTCTTGCAAGGCTCCAGATGAAAGTATTTCACTGGGTTGTCAAACACCAAGGGGAAACATCT
TTGACCCCTTCGCTCCAGGACCAGAGGAGGCGCTCTGTGGTGCGCCGAAGAAGAACGTGGTCAGGGGAGTAGAGACCCTC
TCCCGCAGGAAGCTCATTTTTGAATCTGATGACTTCCCAGTCAAGAGGTTAAGCTTTGAGTTTGATGATTCGGAGGAGGA
AGATCTGTATCTCCAGGGGATCTGCAAGATGTTTCTTGATCTGATCATCTCAAACCAAGCGCTGGAGGCAACCGGAGATG
GCGAGGCTGTTCTGATAGAC---GCCATCCCACCTGAAAGCTACAAGACCCCTGAATCCAAGCCTCTGCTGACCGGCATC
GCAGACACCTGCCCGGACGCTCCTCTGCGGCCATCTCTGAAGATGATCAAGCTCAGCCCAGGCATCTGCCGGAAGCTCGA
CTTCGGTTCGGTCAGCCCCAAGACTCTTTTCGCTGAAGACAATAAGAGCTGAGCCTGTTCCCATCCTTTGGGAACATGGT
CTTGGTGC---------GGCATCCTACAGAGGCATGTCTGTC-GTGGTAACTTTGCTAACTCTGAAGCTGTACAGAGCTA
GCAGTGATGGTTGAGTAGGAAGCAGCCTTGATTAAGTTATACATGTAAAATCTATGTTTAGTTTTCCTTTAATTTTAGCT
AAGCCCAGTCTTACTGCCCTGATG----ATTGATGTAGTAGTACCGGCACTTGTGCCTTGTGGGCTTTCGGCCTAGCGTT
TTGTAAATCTTGAAAAATAGTTTGTTGTCTCTCTGTGCTTGCCTTGAACTGAAGCAGCTGTTGCAGATTCATCCTTGCTT
AGCTTCG-ATCTTTGCACTTGATGTATTA---CTCTGGTGACACCGAAATGATGCAGTGGCGAATTCCAACATGACTTGG
TTTGGTTTGATGCGACTGGTGTAGGGTGAGCTGCTGGCGTACT---AGTGTTAATTGTGCTGAGCTGTAATTCATCTGCC
TTATTAATTGTGCTGGTCTGTCGCGATGATTGATGGCTGCTCTTCCTGTTAATCTTAGCCGTCAGATAGAGCCTCTGATG
GACTGGCTGACGGCCTCGATTTGTCCCTGGCTTTGATATCCTTTTTCGTCCCCTTTGTGAGGAGAAAGGGAGCTTTCATT
GATCAGAGGAAACAGGACTAGAAACAGGGTTTATTTTTCACTGCCTGCGTATGTTTGACTTGTATTTGCCGACATATTTG
GTGGCATCACGAATCCAGGATGTTGTAACCTGAAAATTACTTTCAGCACAGGTGGCTT----------------------
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>SNPs
----------------------------------------------------------------SSSSS-S---------
---SS--------------------------------------S------------------------------------
-SS----------------------------------------S-----------------------------------S
------------------------------S-----------S-------------------------------------
----------S------------------------S--------------------------------------------
-----------S-----------------------------------SS-----SS------------S--------S--
----------S-------------S---S--------SSSS------S------------SSS-----------------
-------------------------------S-S----------S-----S-S---------------------------
---------------------------S---------------S--------------S---------------S-S---
-----------------S---------S-----------------------------------------S----------
--------------------------------------------------------------------------------
---S---------------------SS-------S---------------------------------------------
----------------------------S---------------------------------------------------
----------------S----S--S--S------------S-------S-----S--------------S----------
-S-----------------S------S-----------------------------------------------------
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------------------------------------------------------S-------------------------
------------------------------S-------------------------------------------------
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------------------S-----------------------------------------------------S-------
-S-----------------------S------S----------------S--------S-----------S---------
-----------------S-----------S--------------------------------------------------
---------S--S--S----------------------------------------------------------------
--------SSSSSSSSS-------------------------S-------------------------------------
---------S--------------------------------------------------------S-------------
---------------------------------------------S----------------------------------
--------------------------------------------------S----------------------S------
S-----S--------------SSSSSSSSSSS----S---------------S-------------------S-------
-------------------------------------------SSS--------------S-------------------
--------S--------------S--------------------------------------------------------
----------------------S--------S--SS--------------------------------------------
----------------------------------------------SS--S-----------------------------
------------------S--S---------S--------------------------SSSSSSSSSSSSSSSSSSSSSS
SSSS-------------SS-SS-SSSSS---------------SS------SS----S------S---SS----------
-----------------SS-----------S-------S--------------------S-S-------------S----
----------------------------------------S
>forward_509
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---------GACAATTGCTGTGCGACTCA---------------------------------------------------
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>reverse_1650
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-------------------------------------------------TCCTGAATCGAAGCCTCTGC-----------
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>forward_1062
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--GGGCTGAATCCGCATTACCT----------------------------------------------------------
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>reverse_2628
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-------------------------------------------------------------------TTTCAGCACAGGT
GGTCTGG-------------------------------------------------------------------------
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