>input_sequence_69160
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--------------------------------------------------------------ATGGCGCATGGCAGAGGC
AGCTCCCGGCGGCTGCATGCGCGTCTACTCGCGGTGGTGGGGCTCCTCGCCTGCGCCGCCGTCGCGCCGCGCTCCTCGGC
GCTCAACGTCGGCCTCCAGACCCTCGACGGCGACGGCGACGGCGTGGTACGTGCACGATCTACGCATGTACTATAAGTCT
ATAACCTACCACACTTTAGAGCACGTTATTAAGCTGAGTATGCTTTGCTCTGTCGACTAATTCTCGGCGGCCGGCGGCGG
CGGGGACGCGGACGCAGAGCAAGCAGCAGGCGT---------------------------GCAGCCGAACGTGCGAGTCC
GACCACTGCACGAGTACGCACGCGCATCAACTTCTTCTTCATCTTCG----TTGGTAGTAACTGCATGGTGACTGACTGA
TGATCTCTTT---------TCTTGACGCAGCGGCGCCTTTCCTGCGGTACGGCAAGTACTGCGGCATCCTCTACAGCGGG
TGCCCCGGCGAGCGGCCGTGCGACCCCCTCGACGCCTGCTGCATGCACCACGACAACTGCGTCCTCGTCAAGAGTACGTA
CCCCCAACAACCAATCGATCCATCAACTATTTATGTAGCCGGCGTCTGACTCCCGATCGG--CATCAGATGACTACCTGA
GCACGGAGTGCAACGAGGGCCTGCTGGAGTGCCTGGCGGAGCTGCGGGCCGGCACGGGCACGTTCGAGGGGAACAAGTGC
ATGATCGACGAGGTCATCGACGTGATCACCGTCGTCATCGAGGCCGCCGTCGTCGCCGGCCGGGTCCTGCACAAGCCCTA
G-------------------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G040800
ATATTGCATCCGGAGGTAGCTTTGCGGCGATCCGGGCTTCGCGCCTAGTCCGGATCTGCTCAAGGAGCTCGAACCGGCGC
TCCGACGTCAGAAATGTCTCGCTCCTCACCCGGCGGCGTGGGGGCATGGCTACTAGGCGGTCGGGTGGAGTGGAAAGTGG
CGGCGGCGGAGGACATGCGGAGGAAAATGTGGATGGATGGTAGAGTTTCGGTGCCGCCGGTCGACTTAAATAGCCGGGCT
AGGCACTACGCAGCCCGCCGGAGCTGCGCCACCGGTCCGACGGAGTAGACGAGCTTCGGACCGCCGAGTTTTAGGGCGTT
TCCGGCTGGGATCCCTTTGTCAGTCCTATATGGCGGGCGTGCCCGGGCACCCCATATCCGTTCTATATTTGAGTTGGATA
TGAGGGGTGTCAGTTAGCTCGGACGTTTGAAGCCCATTTGAGACGTCCATTTAGGTTAAAAATTATGACCGTACGGTTCA
CCTGGATCGCTTATGAAGGGTTTGGGATGCCCGGCTGTAGATGCTCTAGTCACCCAATTATTTTCGCCGAAAGAGACT--
--------ACGGAAAAGGAAAAGGAAGAGTAGGCGCTGGAATGCTGGATGGCACACATGCTCGCCGGCTGGATCGATCGC
CC----ACCGACGTGGTGCATGCACGGCATCTTCCACCGCGCTGTCGACTGCCAGCCCGTGTCCCCGCGAGCTAGCCAAC
AAG--CCCCGCGCGCTCACGAGCAGGATACAACCAAAACGCGCACCCGCGCCCCATCTCCA--CCCCCCTTTCTCTCTCT
AAATCAGTGCTGCAACTAGCCAACTACAGTTGCAGATCGAGTTCTCCTCGTCGCCCCAGCCAATGCACCCCTCCGCCGGG
TCTCCCTAGATAATATCTTATCCCGCCGAGAACGACGGCAGGGCTGGGCACGGCGCAGTATAAGTTCAGCTGCAGGCGGC
CGCCGTCTCGACCGACACAAAGA----GAGAGAGAGGGAGGGATCTGATTTTTCTGGAGGGGATGGCGCATGGCAGAGGC
AGCTCCCGGCGGCTGCATGCGCGTCTACTCGCGGTGGTGGGGCTCCTCGCCTGCGCCGCCGTCGCGCCGCGCTCCTCGGC
GCTCAACGTCGGCCTCCAGACCCTCGACGGCGACGGCGACGGCGTGGTACGTGCACGATCTACGCATGTACTATAAGTCT
ATAACCTACCACACTTTAGAGCACGTTATTAAGCTGAGTATGCTTTGCTCTGTCGACTAATTCTCGGCGGCCGGCGGCGG
CGGGGACGCGGACGCAGAGCAAGCAGCAGGCGT---------------------------GCAGCCGAACGTGCGAGTCC
GACCACTGCACGAGTACGCACGCGCATCAACTTCTTCTTCATCTTCG----TTGGTAGTAACTGCATGGTGACTGACTGA
TGATCTCTTT---------TCTTGACGCAGCGGCGCCTTTCCTGCGGTACGGCAAGTACTGCGGCATCCTCTACAGCGGG
TGCCCCGGCGAGCGGCCGTGCGACCCCCTCGACGCCTGCTGCATGCACCACGACAACTGCGTCCTCGTCAAGAGTACGTA
CCCCCAACAACCAATCGATCCATCAACTATTTATGTAGCCGGCGTCTGACTCCCGATCGG--CATCAGATGACTACCTGA
GCACGGAGTGCAACGAGGGCCTGCTGGAGTGCCTGGCGGAGCTGCGGGCCGGCACGGGCACGTTCGAGGGGAACAAGTGC
ATGATCGACGAGGTCATCGACGTGATCACCGTCGTCATCGAGGCCGCCGTCGTCGCCGGCCGGGTCCTGCACAAGCCCTA
GCCA-ATGGTATCACGACGGCGCGCGCGCCGA----GCCGGCGAGCTGGGGGGACA-----------------CGGTAGG
TGGGTGGTACATGCCTTTTCTGCTTGGTGTCACTCGTCAGTCACGGTGTGTGTCCGTGTCCTGTCACGCATGCACCGGCG
CCTCACGTATAGTCTCGCGGGTACGGGCGTGACATGGTTGGTGCTTCAGC----------------------TAAGATCG
ACGATGGCGCCGGATTTTACGACATGTATATCAGTATATGGACATGACTACCATCACCTGCTTTGCAGGATTTAATTTAC
----TTGATGAGTTGGTTCGTCC--------TTGCCTACAC--ATCATGTGCAGCTCA-----TACGTGTTCATGTCATG
CATAATTGGCAC---TAC--TACACTATTGTTACAACTGTCCAAGTTTCGGTGAATTTTGCTGTTTAAAGCTGCTCTGGA
TTTTGGGGGTAATCTATAGATCAGTACTGTAATTTGTGTCGTCTGAATTATGTATAGAGCCTTTCTGTGTAGGGCTG---
---------------------------------------------------------CCGGTTCGATCTGCATATAACGT
GATTAGTTTTGTAAACACTACATGTGCTTAGCTTAGGTGGACAGTGGTGTCCCAGAAAGGCGACGCCATCTGATTGTATG
GTTAGGTGAATAGTGGTATCCCCAGCTCATCATGGTTCAAGTTCTGATGCTCACATTAATCTTAAATTTACGGTATTGAT
AAGTGCCGAACGTGCCATGTTCTAGGATCTCAGCCCGAACGACTTTTCTACCTTTGATTTATTCGCACGAATCTTAGAGC
AGACGGGGTCAGCCACGTCACGCCCTTTTCTCGTTTGGAAAAGCAGCAACTCGTCCCGAACGGTCCATCCTAATCCCTTT
CCCCACAACCTCCCTTTCGTTGACCTGTAGACAAGTGAGCAGATAACGTCGATATGGTCGCTTGGTCGCCGGCGACCACG
ACGGCGCCTACCGTCTCGGAGCAGAGGCCGGAGGCTGCGGGCCTTCGCAGCGCACTCCCTCTGGTTGCCGCACGCGAGAG
AGCTCTCCG
>chr6D_5
----TGCATCCGGAGGTAACCCCACGGCGATCCGGGCTTCGCGCCTAGCCCGGATTCTCTCAAGGAGCTCGAGTCGGCGC
TCCGGCGTCAGAAATGGCTAGCTCCTCACCCGTCGGCGTGGGGGCATGGCTAATAGGCGGACGGGTGGAGTGGAAAGT--
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---------------------------------------------------------------------GGCGGCGGCGG
TGGACAGGCGGAGGAAAATGTGGATGGATGATAGGGTTTCGCTGCCGCAGGTCGACTTAAGTAGCCGGGCTAGATAGTAC
GCTGCCTGCTGG--------------------------------------------------------------------
----------------------------AGCGGCGCCACCGGTCCGATGGAGGAGACGAGCGTTGGAC-----CACCGGG
TTTCCGGGCGTTTTCGCGTGGAACCCCCTGTGAGTCCGACATGACGGGCGTGCCCGGGCGCCCTCATATCTGCCCCATAA
TTGGGTTGGATATGAGGGGTGTCGGTCAG----------------------CCCGATCGTTTGA----------------
--------------------------------------------------------GGCCCGTTTGAGACGTCCATGTGG
ATCGAAAAA----------------------TCGTGACCGAGCAGC---------CCGGCCGGGCGTTTGAGGAGGGTTT
AGGACGCCCGGCTGTAGATGCTCT--------------------------------------------------------
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>chr4B_500
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-------------------GTTTGGATAGCCCCGTTGGAGTTGCTCTAATCACCCAATTATTTTCGCCGAAAGAGACT--
--------ACGGAAAAGGAAAAGGAAGAGAAGGC--------GCTGGATGGCACACATGGTCGCCGGCTGGATCGATTGC
CC----ACCGACGTGGTGCATGCACGGCATCTTCCTCCGCGCTGTCGACTGCCAGCCCGTGTCCCCGTGAGCTAGCCAAC
AAG--TCCCGCGCGATCACGAGCAGGATACAACCAAAACGCGCACCCGCACCCCATCTTCACCCC-CTCTTTCTCTCTCT
AAATCAGTGCTGCAACTAGC-AACTACAGTTGCAGATCGAGTTCTCCTCGTCGCTCCAGCCAATGCACCCCTCCG-----
-----CTAGATAATATCTTATCTCGCCGAGAACGACGGCAGGGCAGGGC---GCGCGGTATAAGTTCAGCTGCAGGCGGC
CGCCGTCTCGATCGACACAAAGAGAGGGAGAGGGAGGGGGGTCTGA---TTTTTTGAAGGGGATGGCGCACGGCAGAAGC
AGTTCCTGGCGGCTGCATGCGCGTCTACTCGCGGTGGTCGGGCTCCTCGCCTGCGCAGCCGTCGCGCCGCGCTCCTCGGC
GCTCAACGTCGGCCTCCAGACCCTCGACGCCGACGGCGACGGCGTGGTACGTGCACGATCTACGCATGTACTATGACCTA
GT--------ACACTTTATAGCACGTTATTAAGCTGGGTATGCTTTGCTTTGTCGACTAACTCTCGGCGGCCGGCGGCGG
C-GGGACGCGGACGCAGAGCAAGCAGCAGGCGT---------------------------GCAGCCGAACGTGCGAGTCC
GACCACTGCACGAGTACGCACGCGCATCACCTTCTTCTTCTTCTTTAGAACTTAGAAGTAACTGCATGGTAGCTCACACC
GAGATGTTTGTCGATGATCTCTTGACGCAGCGGCGCCATTCCTGCGGTACGGCAAGTACTGCGGCATCCTCTACAGCGGG
TGCCCCGGCGAGCGGCCGTGCGACCCCCTCGACGCCTGCTGCATGCACCACGACAACTGCGTCCTCGTCAAGAGTACGTA
CCCC-AACAACCAATTGATCCATCAACTATTTATGTAGCCGGCGTCTGACTCTCGATCGGCACATCAGATGACTACCTGA
GCACGGAGTGCAACGAGGGCCTGCTGGAGTGCCTGGCGGAGTTGCGGGACGGCACGGGCACCTTCGAGGGGAACAAGTGC
ATGATCGACGAGGTCATCGACGTGATCACCGTCGTCATCGAGGCCGCCGTCGTCGCCGGCCGGGTCCTGCACAAGCCCTA
GCTACATAGTACCACAACGGCGCGCGCGCCGAGCCGGCCGGCGAGCTGGGGGGACAAGC---AACAACTTGCTCGGTAGG
TGGGTGGTGCATGCCTTTTCTGCTTGGTGTCACTCGTCAGTCACGGTGTGTGTCCGTGTCCTGTCACGCGCGCACCGGCG
CCTCACGTACAGTCTCGCGGGCACGGG----------------------C----------------------TAAGATCG
ACGACGGCGCCGGATTTTGCGACATGTATAT--------GGGCATGGTTACCATCACCTGCTTTGCAGGATTTTATTTAC
----TTGATGAGTTGGTTCGTCT--------TTGCCTACACGCATCATGCCCAGCTCGTACGCTACGTGTTCATGTCATG
CATAATTGGTATACTTAC--TACACTGTTGTTACCACTGTTCAAATTTCAGTGAATTTTGCTGCTTAAAGCTACTTCGGA
TTTTGGGGGTAATCTATAGATCAGTACCGTAATTTGTGTCGTCTGAATTATGTATAGAACAAAAGCAACTTGTCCATTAA
TTGGATTATTATATGATGTTGATGTGATGGCGACGCCTTTCAGAGTGTACGGCTGCCCCGGTTCGATCTGCATATAACGT
GATTACTTTTG---------------------------------------------------------------------
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>chr4A_531
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--------------------------------------------------CACCCAATTATTTTCGCCGAAAGAGACCAC
CCATGTAAAGGAAAAATGAAAAGTCCGGGAAGGC--------GCTGGATGGCACACATGGTCGCCGGCTGGATCGTTCGC
CCACCGACCGACGTGGTGCATGCACGGCATCTTCCTCCGCGCTGTCGACTGCCAGCCCGTGCCCCCGCGAGCTAGCCAAC
AAGCCCCCCGCGCGCTCACGAGCAGGATACAACCAAAACGC----------CCCATCTCCG--CC-CCCTTTCTCTCTCT
AAATCAGTGCTGCAACTAGCCAACTACAGTCGCAGATCGAGTTCTCCTCGTCGCTCCAGCCAATGCCC------------
---CCCTAGATAATATCTTATCAAGCCAAGAACGACGGCAGGGCTGGGCACGGCGCGGTATAAGTTCAGCTGCAGGCGGC
CGCCGTCTCGATCGACACAAAGA----GAGAGGGAGGGGGATCTGA---TTTTTTGAAGGGGATGGCGCATGGCAGAGGC
GGTTCCCGGCGGCTGCATGCGCGTCTACTCGCGGTGGTCGGGCTCCTCGCCTGCGCCGCCGTCGCGCCGCGCTCCTCGGC
GCTCAACGTCGGCCTCCAGACCCTCGACGCCGACGCCGACGGCGTGGTACGTGCACGATCTACGCATGTACTATAACC--
-T--------ACACTTCATAGCACGTTATTAAGCTGGGTATGCTTTGCTTTGTCGACTGATTCTCGGCGGCCGGCGGCGG
CGGGGACGCGGACGCAGAGCAAGCAGCAGGCGT---------------------------GCAGCCGAACGTGCGAGTCC
GACCACTGCACGAGTACGCACGCGCATCAACTTCTTCTTCTTGATTAGAACTTAGAAGTAACTGCATGGTGGCTCACGCC
GAGGTGTTTGTCGATGATCTCTTGACGCAGCGGCGCCCTTCCTCCGGTACGGCAAGTACTGCGGCATCCTCTACAGCGGG
TGCCCCGGCGAGCGGCCGTGCGACCCCCTCGACGCCTGCTGCATGCACCACGACAACTGCGTCCTCGTCAAGAGTACGTA
CCCC-AACAACCAATCGATCCATCAACTAAAT-TGTAGCCAGCGTCTGACTCTCGATCGGCACATCAGATGACTACCTGA
GCACGGAGTGCAACGAGGGCCTGCTGGAGTGCCTGGCGGAGCTGCGGGCCGGCACGGGCACGTTCGAGGGGAACAAGTGC
ATGATCGACGAGGTCATCGACGTGATCACCGTCGTCATCGAGGCCGCCGTCGTCGCCGGCCGGGTCCTGCACAAGCCCTA
GCTACATAGTACCACGGCGGCGCGCGCCG-GA----GCCGGCGAGCTGGAGGACAAGCAGCAAACAACTTGCTCGGTAGG
TGGGTGGTGCATGCCTTTTCTGCTTGGTGTCACTCGTCAGTCACGGTGTGTGTCCGTGTCCTGTCACGCATGCACCGGCG
CCTCACGTACAGTCTCGCGGGCACGGG----------------------CGTGACATGGTTGGTGCTTCAGCTAAGATCG
ACGATGGCGCCGGATTTTGCGACATGTATAT--------GGGCATGGTTACCATAACCTGCTTTGCAGGATTTAATTTAC
TTGATTGATGAGTTGGTTCGTCTTTGCCAGTTTGCCTACAC--ATCATGTGCAGCTCG-----TACGTGTTCATGTCACG
CATAATTGGTAG---TACTATACACTGTTGTTACCACTGTTCAAATTTCAGTGAATTTTGCTGCTTAAAGCCACTTTGAA
TTTTGGGGGTAATTTATAGATCAGTACTGTAATTTGTGTCGTCTGAATTATGTATAGAGC--------------------
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>SNPs
SSSS--------------S-SSSS------------------------S------SSS--------------SS------
----S-----------S--S------------S-------------------S-------S-----------------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS------SSS----S-S--S--S-------S-------------------------------
-----------------------------S----SSSSSSSS-----------------S--------------------
-----------------------------------S--------------------------------------------
-------------------------------------------------S---------------S--------------
------------------------------------------------------S--------------------SSSSS
SSS-------------------S---------------------------------S-----------------------
-----------S--------------------S-----S--SS-SSSSS----S--S-----------------------
--S-----------------------------------S-----------------------------------------
-----------------------------S----------------------------------------------SSSS
S-SSSSSSSS--------S-----------------S------------S------------------------------
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----------------------------------------S----SS------S-S---------------S--S--SSS
SSSSSSS--S---------------------------S------------------------------------------
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----S---------------------------------------------------------------------------
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--S----S---S--------------------------------------------------------------------
--------S-----------------------------------------------------------------------
---------S-----------S-----SSSSSSSSSSSSSSSSSSSSSS-------------------------------
------------------S------------SSSSSSSS--S----SS--------------------------------
----------------------S----------------------------------S----------------------
---------S-S--------------S-------S-----S---S----S-------------S--------S--S----
------------------------------------------------------------SSSSSSSSS-S-SS-SS---
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-----S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS
>forward_187
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-------GGAGGACATGCGGAGGAAAA-----------------------------------------------------
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>reverse_2048
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-----------------------------------------------AGCTAAGATCGACGATGGCG-------------
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