>input_sequence_69159
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---------------------------------------------------------ATGGCTCGGAGCGGGCTCGGGGT
GGTCGCCGTCCTCGTCCTCGCCGCGACGGCGACCCTGTGCTCGGCGCAGATGA------------------CGATGACGA
TGCCCACCTGCGCGCCGGTGCCGCTCAGCCTGTCCCCGTGCATCGGCTACCTCTTCGGCGCCGGCTCGGCGGCGCTGCCG
TCGTGCTGCTCGCAGCTCCAGGCCTTCTTCCAGTCCCAGGGGCCCTGCCTGTGCGCCATGTCCAAGCTCGCGCCCAGCCC
CTTCGGCCTCGTCCTCGGCCAGGTCCAGGGCATGATCCCCAACGTGTGCAACCTGCCCACCGACCCGTGCGATGGTGCGT
CACC--TCGCCTCCCTT-CTTTCACCACTACTA-----------------------------------------------
----------------------------------------------------------------------TACTACAAGA
AACAATTTACAGGGTTTTTACTGACGAAAAATG--TGATGATGATGCAGATGTCTTTGGGGCGAGCAATTCGACGGACGA
CTCCACCCCGCAGCCAACCGCAAAGGCCGCGTCTCCGGAAGCGGCACCTCCGGCAGCCACTCCCGCCGAGCCTGAGCCAG
AGCATGCAGCCACAACGTCGACGACGCCGGAGAGTGCCGGTGCGACTGAAGCTCCCCCGGCAGCAGGTGACGATTCTCCG
GCTGTTGCCACGAAGACAGGACAGGTTGCCCCCCAAGGCGCTGGATCAAGCACCGATTCACAGGGGATATCAAAGCTCCC
AGAACTGCTGCACGCAGCAGGCGCGCCGAGCTCCGCCGCTGCCACCGTGCTCATCAGTGTGGTTCTTGCCTATGTTTCGG
CCATGTTTGTGTAA------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G016300
AGTTTCAGTCAAGTGACAGAACATATAAACAGAAAAAGACAAAATTTTGCACAGATCTCCATATAAGATATCATGAATAT
AGCATCGACCGAGACTTTGTTAAGTCTCAGTCGACTGAGATTTAGTAATCCCGATATAAAAACAGATGGAAAGACACCTT
TGGCAATGGTAGAACCTCCAGGGAATAGGAGGGTTCAACAAAA-TTAAAGTGAAACAAATTGGTG-GAACCTGAATCTGA
ACTAGGTTTAAACAGATTTTTGGGGCAAAATTAGATGAGTTTCTGTCCAATTCAAATTTCAGAGGAGGCCAAACCCTGGC
CAAATTAAAACGGCATTGTGCCTAATTTTACTGAGAAGCACTGATCTCTCACTTGGTTAAAACC----------------
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---------GAGTATGATTACGACAAGTAGAGCCCGCATGTAAGCCCTGACGCGGCGCAAATGTCACCTCAGTTTGTTCG
ACTTTTGTGACAACGTTTCAAATGGATTCAAGGGTTCAGGTTCAGTGACGACGGTTGCAGTTCTTATGAAAA---TTTAC
AACAAATCTGGGCCGG--------GAATATTTGAACGCTTAGGAGAGGTGGGGCCCACAATGGGTACTTAGTTTTGCCCC
ACACACACACACAAAAAAAGTCACTGGGTACTCTG-----T---AGAGGCTCTGTTTTCGTTCACCAGGCGAGCGCGAGC
ATGGGAGGCAATCGGGTTGGCGACCAACCATCCAAGCCGACCTCATCAAAGCACATTCTGCAGGAAAGCGGCCCGGTAGG
ATGGACCTCTCGCAGTCGCGGAGCGCCGGCAGCGGGT--GACATTCTCCGATCAGTTCACCGGCGAGCCCCGAAAAA---
------------------GCCCGGGCAGCAGTTAGATAGACCGGCTCATCCACCCGGCCACCGTTTCCGAGCT-------
----------------TTTCCCAACAGTTTCCCGT----ATAAACCCTGCCGCCTCCATCGTCTTCCCCTCGTCGAATC-
AATCCAATCCACCCCAGTCCAATCCATTCCATTCCATTCCACCTAGAACTACCGACGATGGCTCGGAGCGGGCTCGGGGT
GGTCGCCGTCCTCGTCCTCGCCGCGACGGCGACCCTGTGCTCGGCGCAGATGA------------------CGATGACGA
TGCCCACCTGCGCGCCGGTGCCGCTCAGCCTGTCCCCGTGCATCGGCTACCTCTTCGGCGCCGGCTCGGCGGCGCTGCCG
TCGTGCTGCTCGCAGCTCCAGGCCTTCTTCCAGTCCCAGGGGCCCTGCCTGTGCGCCATGTCCAAGCTCGCGCCCAGCCC
CTTCGGCCTCGTCCTCGGCCAGGTCCAGGGCATGATCCCCAACGTGTGCAACCTGCCCACCGACCCGTGCGATGGTGCGT
CACC--TCGCCTCCCTT-CTTTCACCACTACTA-----------------------------------------------
----------------------------------------------------------------------TACTACAAGA
AACAATTTACAGGGTTTTTACTGACGAAAAATG--TGATGATGATGCAGATGTCTTTGGGGCGAGCAATTCGACGGACGA
CTCCACCCCGCAGCCAACCGCAAAGGCCGCGTCTCCGGAAGCGGCACCTCCGGCAGCCACTCCCGCCGAGCCTGAGCCAG
AGCATGCAGCCACAACGTCGACGACGCCGGAGAGTGCCGGTGCGACTGAAGCTCCCCCGGCAGCAGGTGACGATTCTCCG
GCTGTTGCCACGAAGACAGGACAGGTTGCCCCCCAAGGCGCTGGATCAAGCACCGATTCACAGGGGATATCAAAGCTCCC
AGAACTGCTGCACGCAGCAGGCGCGCCGAGCTCCGCCGCTGCCACCGTGCTCATCAGTGTGGTTCTTGCCTATGTTTCGG
CCATGTTTGTGTAAACCCCCATAGC---CATTACCGTGACACCAGCAAATGTATCGATGTACCCTACGGC---GCGGTGT
AGATTCAGGCCGCGCCCGTGTTACACCATGTTGCAGTGAGAATGTTACAGTTCATGTGTTCGAAGCAAAGCAAAATGTTC
TAGGGTTTCAGATCCTGATGGCTCGCGTTGGTTACAACAATGGAATCAGACAATGTTCCGGCAGGAGAATAACACCTACC
TGCCATAATTCCCCAATATCCGCACAAGGAAATGGTGAAAAGATGACGACACC-ATCTCCAACAATGCCGCGGATGAAGT
AGCCTAGCACAATGTCACCAGTCTACAGTTAATATGTCAGATTGGATAGACTACATCATAGCTTAGCAACCGAAATGCAC
ATAAGATGCAAATCCTCATGAATGCAG-----------GTTCCTGGCATCTCATTCCACCGTCGACCGGCACCTGAAATA
CG-AGGCTGGGATCAAGGGGTGCTTGTTCTGCTTGTCCACAACTCAACCAGCATAAGTCCACTTCCATCACCCAACATGG
TATTTGAGTATTTCGGTCACAACAGCGACTGTAAAACAAAATCGGGAAGAAAATGTCACTAACGGATGAGGCCATGAAAA
ATGCTTGATAAAATTCATTCAAAATCCAAGGAAAAATATCCAAAACTAACTCGAAACATGCAAGGTTAATACGT------
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----AGTATATCCTAAGCAAAATGCAGGG---TAGAAAGCTGACAGTTAACAAATACGATATGAAAAATGATATTATTAA
GAAACAGTAAGACATACCGAGCTATGCCTCTCCACAGCGGTTAGGCCCTCCCACCCGTCCGATTTTAGACATGCATGGCC
TGGATCACCTCTGTCATCTACCCCTGCCCCACTTTTACCGCGAAACGGCTACCAAACGTAAACTGGGCCACTACTCTGAA
GAACGACTTCGGCGATTTCCTGTGAGCTGGACCAACACATTGAGCCAGGGTAACTACGTGCGCGAACCCAGCCCAGCGCC
GTGCCC
>chr4B_134
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-----------------------------------------------------ATATAAAAACAGATGGAAAGACACCTT
TGGCAAAGGTAGAACCTCCATGGAACAGGAGGGTTCTCCAAAATTTAAAGTGAACCAAATTCCACCGAACCTGAATCTGA
ACTAGGTTTAAACAGATTTTTGGGGCAAAATTAGATGAGTTTCTGCCCAATTCAAATTTCAGAGGAGCCCAAACCCTTTG
CGAAATAAAAACCAGGAGTTGTAGTAAAACGTATGATGTCGTGCATGTTGAACCCAGAGGCCATGACATATATGGCTCTT
GTGCCAATCCGCGGAGTACATTCGCCGGGAAAATGCCGACAATGGTCACCACTCACCACCAACTATACCTGGCCACGGGA
TACCCGGGCCGGCCAGTCCGACCCGACCCGGTCTTGCCCGTGGGTTGGGCCTGGGCCTAAAATTTGAGCCCGAAGGTTGG
GCCGGGCTTGGGCTTGACTTTTTTGCGTTTTAGGAAAGAGACCTGAGGCTAGATGGGCTGAGCATGGGCCTGAAATCTAG
GCCGGGGGACGGGCCGGGCTTGGGCTTGACTTTTTGCATTTTAGGGAAGACGACCGGGCTTTTCCTTTTATGGGCCAGGC
CTGACGGTCGGGCCGGGCCAGGTCTGGGCCTAAGTTTTCTACTGCGGGCTTTATTAGGCCTAGCCCCACTTATGGTCAGG
TATACCACCAACTCACGACACCTCCTAGTGCCGCCACCTGTTGTAGGCCTTCGGTGCGCCAGACAGCTAGCGATGCAGGA
TTGATAGGGTCGCACCATGTGGCGAAAGACTAGTGCACTGCCATTTTCTACAAATCCATAACCATCCTCGCTATTTAATC
TTTGCCAGTGAGCACGATTATGACAGATGGAGTCCGCGTGTAAGCCTTGCAT------AATTGTAAACTATGTTTATCTG
ACTAATGTGTC-ACGTTTTAAATCGATTCATGGGTTCAATAAT------GACGATTGGAGTTCTTATGAAATCTCTTTAT
AACATATCTGGGTCTTTTTTTGGAGAATATTTGAACGTTTAGGGCAGGTGGGGCCCACACTGGGTACTTGGTTTTGCCC-
--ACGCACACAAAAAAAAAGTCACTGGGTACTACTAGAGCT---AGAGGCTCTGTTTTGGCTCACCAGGCAAGC------
ATGAGAGGCAATCGGGTTGGTGACCAACCGTCCAAGCCGAGCTGATCAAAGCACATTCTGCAGGAAAGCGGCCCGGTAGG
ATAGACCTCTCACAGTCACAGAGAGCCGGCAGCGAGCGCGACATTCTCCGGTCAGTTCACCGGCGAGCCTCGAAAAGCCA
CAGGACCG-------------------GCAGTTAGATAGACCGGCTCATCCACCCGGCCACAGTTTCCCAGCT-------
----------------TTTCCCAACAGTTTCTCGTATACATAAACCCTGCCGCTTCCATCGTCTTCCCCACGTCGAATCC
AATCCAATCCGATCCAGTACATTCCATTCCATTCCAT-----CAAGAACCATCCAAGATGACCCGGCGCGTGCTCGGGGT
GGTT---------GTCCTCGTCGCGACGGCGGCGCTGTGCTCGGCACAGATGACGACGGTGCAGCCGACGACGATGACGA
TGCCCACCTGCGCGCCGGTGCCGATCAGCCTCTCCCCGTGCATCGGCTACGTCTTCGGCGCCGGCTCGGCGGCGCTGCCA
TCGTGCTGCTCGCAGCTCCAGGCCTTCTTCCAGTCCCAGGGCCCCTGCCTGTGCGCCATGTCCAAGCTCGCGCCCAGCCC
TTTCGGCCTCGTCCTCGGCCAGGTCCAGGGCATGATCCCCAACGTGTGCAACCTGCCCACCGACCCGTGCGATGGTGCGT
CCCTCATCTCCTCCCTTCCTTTCACCACTACTACGTACTCCCTTCGTCCGGAAATACTTATCATAGAAATGGATATAAAT
GGATGTATCTAAAATAAAAATACATCTAGATACGTACATTCCTCCGACAAATATTTCCGGGCGGAGGGAGTACTACAACA
CACCATTGACAGGGGTTTCATTGACGGAAATCTGATGATGATGGTGCAGATGTCTTTGGCGCGAGCAATTCGACCGACGA
CTCGACGAC---GCCAACCGCAAAGGCCGCGTCTCCAGAAGCGGCACCTCCGGCGGCCACTCCCACCGAGCCTGAGCC--
----TGCAGCCACAACATCATCGACGCCGGAGAGTGCCGGTGCGACTGAAGCTCCACCGGCAGCAGGTGACGATTCTCAG
GCTGCTGCCACGAAGACGGGACAGGTTGCCCCCCAAGGCGCTGGATCAAGCACCGATTCACAGGGGATATCAAAGCTCCC
AGAACTGCTGCACGCAGCAGGGGCGCCAAGCTCCGCCGCTGCCACCGTGCTCATCAGTGTGTTTCTTGCCTATGTTTCGG
CCATGTTTGTGTAAGCCCCCATAGC---CATTACCGTAACCCCAGCGAAAGTATCGATGTACCATACGAT---GCGGTGT
AGATTCAGGCCGCGCCCGTGTTACACCATGTTGCAGTGAAGATACTACAGTTTATGTGTTTGAAGCAAAGCAAAATGTTC
TAGGGTTTCAGATCCTGATGGCTCGCGTTGGTTACAACAATGGAATCAGACAATGTTCCTTTC-GTGGATAACCCCTAGC
TTCCCTAA-TCCCCAATATCCACACAAGGAAATGGTGAAAAGATGATGACACC-ATCTCCGACAATGCTGCGGATGAAGT
AGCCTAGCACCATGTCACCAGTCTACAGTTAATATGTCAGATTGGATAGACTACATCATAGCTTAGCAACCGAAATGCAC
ATAAGATGCAAATCATCATGAATGCAGAAGGAAGGTAGGTTCCTGGCATCTCATTCCGCCATCGACCGGCACCTGAAATA
CGAAGGCTGGGATATAGGGGTGCTTGTTCTGCTTGTCGACAACTCAGCCAGCATAAGTCCACTTCCATCACCCAACATGG
TATTTGAGTATTTGAGTCATAACAGCGACTGAAAACGAAATC--AGAAGAAAATGTCACCAAGGGATGAGGCCATGAAAA
ACACTTGATAAAATTCATTCAAAATATAAGAAAAAGTAATCATCACTAACTCGAAACAGGTAAGGTTAATA---------
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----------TCCTTACAAAAATACAGGGTGGTAGAAAGCTAACAGTTAACCAATAGAATATGAAGAATGATTTA-----
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>chr4A_615
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------------AAAAAAAGTCACTGGGTACTAGAGCTAGCTAGAGAGGCTCTGTTTTGGCTCACCAGGCGAGC------
ATGCGACGCAATCGGGTTGGTGACCAACCATCCGAGCCGAGCTCATCAAAGCACATTCTGCAGGAAAGCGGCCCGGTAGG
ATAGACCTCTCACAGTCACGGGGCGCCGGCAGCGGGT--GACATTCTCCGATCAGTTCACCGGCGAGCCCCGAAAAGCCA
CGGGGCTGGACTAGCCCGGCCCGGGCAGCAGTTAGATAG-----------------GCCACCGTTCCCGAGCTTTCCACC
CGTCGCGTCGCCCTGTTTTCCCAACAGTCTCTCGT----ATAAACCCTGCTGCCTCCATCGTCTTCCCCACGTCGAATC-
AATCCAATCCGATCCAGCACAGTACATTCCATTCCATTCCACCAAGAACTATCCAAGATGGCTCGGCGTGTGCTCGGGGT
GGTCGCCGTCCTCATCCTCGT-----------------------------------------------------------
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------------------CGCAAAGGCCACGGCTCCAGAGG---------CGGCAGCTACTCCCGCCGAGCCTGCA----
--------------------ACCACACCGGAGAGTGCTGGTGCGACTGAAGCTCCACCGGCAGCAGGTGACGATTCTCCG
GCTGTTGCCACCAAGACAGGACAGGTTGCTCCCCAAGCAGCTGGACCAAGCACCGATTCACAGGGGATATCAAAGCTCCC
AGAACTGCTGCACGCAGCAGGCGCGCCGAGCTCTGCCGCTGCCACCGTGCTCATCAGTGTGTTTCTTGCCTATGTTTCGG
CCATGTTTGTGTAAACCCCCATAGCAGCCATTACCGTAATACCAGCGAATGTATCCATGTACCATACGAGGAGGCGGTGT
AGATTCAGGCCGCGCCCGTGTTACACCATGTTGCAGTGAAAATGTTACACTTCATGTGTTCGAAGCAAAGCAAAATGTTC
TAGGGTTTCAGATCCTGATGG---------GTTACAACAATGGAATCAGACAATGTTCCTTTG-GTGGATAACCCCTACC
TGCCATAATTCCCCAATATCCACACAAGGA-------------TGACGACACTTATCTCCAACAATGCCGCGGGTGAAGT
AGCCTAGCACCATGTCACCAGTCTACAGTTAATATGTCAGATTGGATAGACTACATCATAGCTTAGCAACCGAAATTCAC
ATAAGATGCAAATCCTCATGAATGCAGAAGGAAGGTAGGTTCCTGGCATCTCGTTCCACCGTCGACCGGCACCTGAAATA
CG-AGGCTGGGATCTAGGGGTGCTTGTTCTGCTCGTCGACATCTCAACCAGCATAAGTCCACTTCCATCACCCAACATGG
TATTTGAGTATTTCGGTCACAACAGCGACTGTAAAACAAATTTGAGAAGAAAATGTCACTAACGGATAGGGCCATGAAAA
ACGCTTGATAAAATTCATTCAAAATCCAAGGAAAAATATCCAACACTAACTCAAAACATGTAAGGTTAATACGTACTCCC
TCCGTCCCAAAATTCTTGTCTTAGATTAGTATGTAGTACATCCGTATCTAGACTAATCTAAGACAAGAATTTTGGGACGG
AGGGAGTATATCCTAAGCAAAATGCAGGG---TAGAAAGCTGACAGTTAACAAATACGATATGAAAAATGATATTATTAA
GAAACAGTAAGACATAGCGAGCTATGCCTCTCCACAGCGATTAGGCCGTCCCACCCGTCCGATTTCAGACATGCATGGCC
TGGATCACCTCTGTCATCCACCCCTGCCCCACTTTTACCGTGAAACGGCTACCAAACGTAAACTGGGCCACTACTCTGAA
GAACGACTTCGGCGATTTCCTGTGAAGTGGACCAACACTGAGCC------------------------------------
------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
------S-------------S----S----------SS----------------S------SSSS---------------
---------------------------------------------S---------------------S---------SSS
-S--S-----SSSSSSS--SSSSSSSSSSSS-SS--S-SSS--SSSSS-S-SSSSSSSSSSSSS----------------
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------------S-S-----S----SS-S---S----S--------S--SSSSSSSSS--S---S-S--SS----S-SS-
---SS----S-S------S----S------S-------SSSSSSSSSSS----S---S-------------S-------S
----S-------S-SS---------------------S-----SS--------------S---------S---------S
SS--S------S--------------------SSS-----------------------S-S-------------SSSSSS
---S----------------S-------------------S---------------------------------------
--S--------S-----S----------------------------------------------------------S---
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-------------------------------S-------------------------------------S----------
----------SSS-----S--S---------------------S-------S-S-S----------S---S---------
--------------------S----------S-S-----------S----------------------------------
-----------------------S-------S------------------S----------------------------S
-----------------------------------------S--------------------------------------
S-------------------------------------------------------------------------------
-S-S----S-----------------------------------------------------------------------
------------------------------------------------------------------------------S-
S--S---S------S---S-S-----S---SSS----------S---------------S--------------S-----
---S--SS-SSS------------------------S-----------------------------------------SS
SSSS------------S--S-----------------------------------S------------------------
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-------------------------------------------------------------S------------------
-------------------------------------S--------S----------------S----SS----------
---------------------------------------S----------------------------------------
-----------------------------------------------------------SSSSS-S-S-----S------
---------------------S----------------------------------------------------------
----------S---------------------------------------------------------------------
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--------------S----------------------S------------------------------------------
----------------------------------------S-S-S-----------------------------------
-S-----------------------------------------S----------------S-------------------
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----------------S----------------------S-------S-----------------S--------------
------------------S---------------------S---------------------------------------
-------------------------SS-----------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_1158
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------------------GGCCGGGAATATTTGAACGC------------------------------------------
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>reverse_3055
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--------------AAGGGGTGCTTGTTCTGCTT----------------------------------------------
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