>input_sequence_69146
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------------------------------------------------------------ATGCAACCCCCTCTGCGGTC
ATACAACATATTCGTCACAGTAGGCGACAGCCTGTATGTCATGGCGACCGAGGCTGGCTTGCGATCCCGGCTTATATGGT
TCCATGCTCTCATCTACGGCCAGCCGCCGGATTTCATAGGTCAGCAGGACTGGTACTGGCGTCCTCTCGACCTGCCTTGC
TTTGATTATGAGGGTGGTCATTACAAGTCGGATCTGCCTCACTCTGAGTACGACTCGGATGCTGATGACGACTGGAATGC
TGATTACACGGATTCTGCAGATGTTACAAACACCAATGAGTCGCCACACCCCTGTGCGATCTGTGCCTACACGGTGGTTG
GTAATTCACAGATCTGGGTATCCACACTGGGCGCTGGCACGTACTCCTTTGACATCATGAGTGGCACGTGGAGCAAGGTC
GGCACGTGGGTGCTGCCGTTCAGAGGCCGTGCTGTTTACGTCCCCGAGCACAACCTCTGGTTTGGCTTCTCAGATAAAGA
CGATCAGCTCTGTGCGGTTGACCTTGCTCTGACGCAGCCGGTGCTGCAGAAGGTGTTAGAAGACCCACCTCTGCCCGAGG
CGTGTTCCCCGATGGCTTCCCATCTTCTTCATTTGGGTTCTGGGCTTCTGGCAAGTTGTGCGTGCAAAGGCTGTTCCAGA
AGACACAGCAGGGGAGCCTTCTTCAGTCAGTTCCCAGTGATGAGAAAGATGAAGGTTTTGCCGTGCTTGCTGGTGTGGAA
GTTCGGCGCGATGATGGCATTGGAGACCTTCAGATGA-------------------------------------------
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>chr2D_1_TraesCS2D01G113800
ATGTATCTATTTAGAAAATGAAAAATAGAGAAGAACAGAAAAAGTAAAAAGGATTAAAATAAATGAAATGGACAATGAAT
GAATATAAAAGTAGACAAAAATAAAAAGCCTAGCAGAAACCCAGAAAATAGGGGGGAGTGGGGTGGGCATGGGCCGGCTC
CCGTAGTCGGCGAAGGAGGGGAAACTGGGAAACAAAGGGCCAACTGGCCCAGCAACGGAGCGGTGGGAGCGTTAGG----
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----------------------------------------------------TCTATATCAGAACCTCACGCACCTTCTT
CCCCTCCTTCATCCCCTTCTCCCTCTCCCAAACTCCAGTACATT-------------TCTCTCTCTCTCGCCGACTCCGA
CATCCCGGTTTGTCCGCTGCCTGCTGAAGGATCCCTGCCTGCTCCCTCCCTTGGCCAGTTATGACCCTGATTTCCGATTC
TATTTCTCTACATATGTGGATTCTTCATTCGATCTCACCTGGAGAAGACGCCGATATCAACAATTAACTAGTCCATGCTC
TTCTTTTATTATTTTTCAGTTCATTCAAATAGAAGAAAGGAAAAAGAAGCCAGATTTCTGTCTATTACTTCCTCAATTTC
GAATTACTTGTCGCATGTATGGATGTATTTAGATGTATTGTAGTTCTAGGTACATCCATTTCTGCGAGAGTAATTTGAAA
CGGAGGGAGTAGATCGGGGGAGGCAGAGAGAGATTTGAAGCGGAACCATGAATCGCCGTTTCGTCAATCTGCTGGTCAAT
AGGTTGTGCGCCCCTCGACCCGCTTACAGGCTGCACTGCATCGACCCCGCAACCTTGTTTTACCCTACCGGATCGCCACA
GCCAGCAGATCCAGCTGCCATAAACCACAGCGCTCCAGCTCCAGCTCCAGCTCCTGGGAGGTTGCCTGCGCCCACCATAT
CCTTCGACTGGCCCTGCAAGCCGCACCAATC-------------------------------AACATCATTGCCGTCGAC
CACGAGGGCCGCACGCTCCTCTACGACACCGCCTCCAGGGCTGTCCGGGCCTTGAACCCGATGCAACCCCCTCTGCGGTC
ATACAACATATTCGTCACAGTAGGCGACAGCCTGTATGTCATGGCGACCGAGGCTGGCTTGCGATCCCGGCTTATATGGT
TCCATGCTCTCATCTACGGCCAGCCGCCGGATTTCATAGGTCAGCAGGACTGGTACTGGCGTCCTCTCGACCTGCCTTGC
TTTGATTATGAGGGTGGTCATTACAAGTCGGATCTGCCTCACTCTGAGTACGACTCGGATGCTGATGACGACTGGAATGC
TGATTACACGGATTCTGCAGATGTTACAAACACCAATGAGTCGCCACACCCCTGTGCGATCTGTGCCTACACGGTGGTTG
GTAATTCACAGATCTGGGTATCCACACTGGGCGCTGGCACGTACTCCTTTGACATCATGAGTGGCACGTGGAGCAAGGTC
GGCACGTGGGTGCTGCCGTTCAGAGGCCGTGCTGTTTACGTCCCCGAGCACAACCTCTGGTTTGGCTTCTCAGATAAAGA
CGATCAGCTCTGTGCGGTTGACCTTGCTCTGACGCAGCCGGTGCTGCAGAAGGTGTTAGAAGACCCACCTCTGCCCGAGG
CGTGTTCCCCGATGGCTTCCCATCTTCTTCATTTGGGTTCTGGGCTTCTGGCAAGTTGTGCGTGCAAAGGCTGTTCCAGA
AGACACAGCAGGGGAGCCTTCTTCAGTCAGTTCCCAGTGATGAGAAAGATGAAGGTTTTGCCGTGCTTGCTGGTGTGGAA
GTTCGGCGCGATGATGGCATTGGAGACCTTCAGATGATGAAGCACAAGTCCATGCGTTATGGTTTTGATGAAAATGGCGT
CAAGCTGCTGTGATATTGCAAGCGGGTTTAAAGCAAGGACTTCTTTTAAAAAATCTTTTAGGCCAGTTTTTGTTTGTATA
TTCTGCTATCTGTGGAAATTTAACTTGGCTGATTTGTTGAATTACTGTGGGACTAGAATCGGACTAGAATCAAGTTATGT
CTGTTGTACGTTAGAGATTTCCTGCAATCCTCTTATGCAGAGTCTTAAGTAACTAGAAGGATATATGATATGCGCGCTTT
GCTGCGCCCGTAAAGACTAATGAATAGACAAACATGTCTTATTGATGCAAGTTATCTTCATTTCTTAGATGAGTAGCAAA
GTACATAATTTTTTATTCCATTCAAATCTATTTACGGATACATCAAAATATGAAGCAAAAAAATGTGCATTGTTAATTAC
CAAAGACACTGAACATTTTACAACATTGAGTATCATCAAGGCAGCTCTCAACATTCATGCATCTTCACTCGTGTGACTTT
TTTTTTCTGCAAAGCTTACTCACAAACAATGAAGTTAATCAGTAGTGGGCAACATGCAATATCTTTGCAATCTTGACAGA
TAGTGATAAAAGGTTGTTCAAGATTCTCTGGCTTTTCGAGAGTATAGTATAGCTCTAGGCATAAAGTTCGCTTCCTGTCA
CACAAACATACAAAAGGAAAATTTAATCCCAAC------------------------------------AATTGCAGGAC
ACAATTTGTAAGGAAGAGAAGAAATTGTTAGTACATAATGTGAGAACAATTTGGTGAGGAACAATGAAGGAGATCCTGCC
AAAAGTGTATCTTGACCAATCATATAACACATGATAACTCATGTAAGCATGAAATTCAATTCTAACTGGATACATAGATT
CAAATTCAATTCATTAATTGTGGCAATTTTGAACAATATAATAAAACTGATTGACCAAGGGAAATGCTTACTGTACTATT
GGACTTGGGGACTTCTATTGATGCAGCGCTGTT
>chr2A_1
ATGTATGTATTTAGAAAATGAAAAATAGAGAAGAACAGAAAAAGTAAAAAGGATTAAAATAAATGAAATGGACAATGAAT
----ATAAAAGTACAT-AAAATAAAAAGCCTAGCAGAAACCCAGAAAATAGGGGGGAGTGGGGTGGGCATGGGCCGGCTC
CCGCAGTAAGCA-------GGAAACTGGGAAACAAAGGGCCAACTGGCCCAGCAACGGAGCGGTGGGAGCGTTAGGTCAA
AGTCATGGGGCATCTCTCCCTCTTGGAGAGCTCCTAGCTGACGCTCGCGAGCGTCAACCACACGAGCTTCCGCGCAGGCG
CACGATCAAAATGGGCCGGCCCATTCAGTGGCGTCAAAACGAGCTGCTATTAATCCGAAAAAAAAGATGCGGCATCGAGG
AATCGAACTCGACACCCGACGGTAGTGGCCAAGTGTCCAATACCACTTGAGCTTCTCACTGTTTAATGTATACACGCCGC
GCGAATTTCTAAGAACTAAGAGCAGCGGAAGAAAAAAAATCAAAAGTTTTGACCATTAAACATTTTTTTGATATATGCTG
AACAATTCTTAAAAACACACTGAACATTTTTTTGATATACACTGAACATTTTGTAAGTACACAATGAACATTGTTATAAA
TACGTTGAACATTTTGTTAAATGTGTGATTATTTTTTTGTAACACACAATGAACATTTTTATAAACGCAAGGTGAATTTT
TTTGCAATATATGTTGAACATTTCCTTAATATACGATGAACATTTTTTGTCATACACAGCGAACTTTTTATATAATACCA
AAAAATGAGAAGAAAAAGGAAAATAAGAAAATAAATGAAAAGGTAAAAGGGAACAAAAAAACCATAACAAAACCACTGAA
AACCGGACAAAACAGTGAAAAGACCGGAAGCAAAAACAGCACAGAAGAAAAACGAAAAAAAAAACACGAAACAGCGAGGG
AAAGCAGCAGGGAAGGGATAAACAGGCGAATCCCGCACGTGGGCCGGCCCAACCAGACGCTAGCCTCAGCGAAGGCAGGA
CGTTTGGACGCTAACGAGCGTCATATAGGATCCACCTCCCTCTTGCGCCGCCTCTATATCAGAACCTCACGCACCTTC--
---CTCCTTCATCCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGCCGACTCCAA
CATCCCGGTTTGTCCGCTGCCTGCTGAAGGATCCCTGCCTGCTCCCTCCCTTGGCCAGGTATGACCCTGATTTCCGATCC
TATTTCTCTACATATGTGGATTCTTCACTCGATCTCACTTGGAGAAGACGCCGATATCAACAATTAACTAGTCCATGCTC
TTCTTTT-TTATTTGTCAGTTCATTCAAATAGAAGAAAGGAAAAATAAGCCAGATTTCTGTCTATTAGATC---------
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-------------------GAGGCAGAGAGAGATTTGAAGCGGAACCATGAATCGCCGTTTCGTCAATCTGCTGGTCAAT
AGGTTGTGCGCCCCTCGACCCGCTTACAGGCTGCACTGCATCGACCCCGCAACCTTGTTTTACCCTACCGGATCGCCACA
GCCAGCAGATCCAGCTGCCATAAACGACAGC------------GCTCCAGCTCCTGGGAGGTTGCCTGCGCCCACCATAT
CCTTCGACTGGCCCTGCAAGCCGCACCAATCCGGCTGGATGGATTTCATGGCCTTCAAGAACAACATCATTGCCGTCGAC
CACGAGGGCCGCACGCTCCTCTACGACACCGCCTCCAGGGCAGTCCGGGCCTTGAACCCGATGCAACCCCCTCTGCGGTC
ATACAACATATTCGTCACAGTAGGCGACAGCCTGTATGTCATGGCGAGCGAGGCTGGCTTGGGATCCCGGCTTATATGGT
TCCATGCTCTCATCTACGGCCAGCCGCCCGATTTCATAGGTCAGCAGGACTGGTACTGGCGTCCTCTCGACCTGCCTTGC
TTTGATTATGAGGGTGCTAATTACAAGTCGGATCTGCCTCACTCTGATTACGACTCGGATGCTGATGAGGACTGGAATGC
TGATTACACGGATTCTGCAGATGATACAAACACCAATGAGTCACCACACCCCTGTGCGATCTGTGCCTACACGGTGGTTG
GTAATTCACAGATCTGGGTATCCACACTGGGCGCTGGCACGTACTCCTTTGACATCGTGAGTGGCACGTGGAGCAAGGTC
GGCATGTGGGTGCTGCCGTTCAGAGGCCGTGCTGTTTACGTCCCCGAGCACAACCTCTGGTTTGGCTTCTCAGATAAAGA
CGATCAGCTCTGTGCGGTTGACCTTGCTCTGACGCAGCCGGTGCTCCAGAAGGTGTTAGAAGACCCACCTCTGCCCGAGG
CGTGTTCCCGGATGGCTTCCCATCTTCTTCATTTGGGC--------TCTGGCAAGTTGTGCGTGCAAAGGCTGTTCCAGA
AGACACAGCAGGGGAGCCTTCTTCAGTCAGTTCCCAGTGATGAGAAAGATGAAGGTTTTGCCGTGCTCGCTGGTGTGGAA
GTTCGGCGCGATGATGGCATTGGAGACCTTCAGATGATCAAGCACAAGTCCATGCATTATGGTTTTGATGAAAATGGCGT
CAAGCTGCTGTGATATTGCAAGCGAGTTTAGAGCAAGGACTTCTTTTGAAAAAACT-TTAGGCCAGTTTTTGTTTGTATA
TTCTGCTATCTGTGGAAATTTAAATTGGCTGATTTGTTGAATTACTGTGGGACTAGAATCGGACTAGAATCAAGTTATGT
CTGTTGTACGTTAGAGATTTCCTGCAATCCTCTTATGCAGAGTCTTAAGTAACTAGAAGGATAT-----ATGTGCGCTTT
GCTGCGCCGGTAAAGAGTAATGAAGAGACAAACATGTCTTATTGATGCAAGTTATCTTCATTTCTTAGATGAGTGGCAAA
GTACAAGTTTTC--ATTCCATTCAAATCTAGTTTCGGATACATCAAAATATGAAGC-AAAAAATGTGCATTGTTAATTCC
CAAAGACACTGAACATTTTACAACATTGAGTATCATCAAGAGAGCTCTTAACATTCATGCATCTTCACTCGTGTGACTTT
TT--TTCTGCAAAGCTTAATCACAAACAATAAAGTTAATCAATAGTGGGCAACATGCAATATCTTTGCAATCTTGACAGA
TAGTGATAAAAGGTTGTTCAATATTCTCTGGCTTTTCGAGAGTATAGTATAGCTCTAGGCATAAAGTTCGCTTCCTGTCA
CACAAGCATACAGAAGGAAAATTTAATTAATTTTATTTTTTAATATCCTATAGTTAAGCATATCAAGCTAATTGCAGGAC
ACAATTTGTAAGGAAGAGA------------------------------------------------------TCCTGCC
AAAAGTGTATCTTGACCAATCATATAACACATGATAACTCATGTAAGCATACAATTCAATTCTAACTGGATACGTAGATT
GAAATTCAATTCATTAATTGTGGCAATTTTGAACAATATAATAAAACTGATTGGAG-------ATGCTTACTCTACTATT
GGACTTGGGGACTTCTATTGATGCGGTGCTGTT
>chr2A_1
ATGTATGTATTTAGAAAATGAAAAATAGAGAAGAACAGAAAAAGTAAAAAGGATTAAAATAAATGAAATGGACAATGAAT
----ATAAAAGTACAC-AAAATAAAAAGCCTAGCAGAAACCCAGAAAATAGGGGGGAGTGGGGTGGGCATGGGCCGGCTC
CCGCAGTAAGCA-------GGAAACTGGGAAACAAAGGGCCAACTGGCCCAGCAACGGAGCGGTGGGAGCGTTAGGTCAA
AGTCATGGGGCATCTCTCCCTCTTGGAGAGCTCCTAGCTGACGCTCGCGAGCGTCAACCACACGAGCTTCCGCGCAGGCG
CACGATCAAAATGGGCCGGCCCATTCAGTGGCGTCAAAACGAGCTGCTATTAATCCGAAAAAAAAGATGCGGCATCGAGG
AATCGAACTCGACACCCGACGGTAGTGGCCAAGTGTCCAATACCACTTGAGCTTCTCACTGTTTAATGTATACACGCCGC
GCGAATTTCTAAGAACTAAGAGCAGCGGAAGAAAAAAAATCAAAAGTTTTGACCATTAAACATTTTTTTGATATATGCTG
AACAATTCTTAAAAACACACTGAACATTTTTTTGATATACACTGAACATTTTGTAAGTACACAATGAACATTGTTATAAA
TACGTTGAACATTTTGTTAAATGTGTGATTATTTTTTTGTAACACACAATGAACATTTTTATAAACGCAAGGTGAATTTT
TTTGCAATATATGTTGAACATTTCCTTAATATACGATGAACATTTTTTGTCATACACAGCGAACTTTTTATATAATACCA
AAAAATGAGAAGAAAAAGGAAAATAAGAAAATAAATGAAAAGGTAAAAGGGAACAAAAAAACCATAACAAAACCACTGAA
AACCGGACAAAACAGTGAAAAGACCGGAAGCAAAAACAGCACAGAAGAAAAACGAAAAAAAAAACACGAAACAGCGAGGG
AAAGCAGCAGGGAAGGGATAAACAGGCGAATCCCGCACGTGGGCCGGCCCAACCAGACGCTAGCCTCAGCGAAGGCAGGA
CGTTTGGACGCTAACGAGCGTCATATAGGATCCACCTCCCTCTTGCGCCGCCTCTATATCAGAACCTCACGCACCTTC--
---CTCCTTCATCCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGCCGACTCCAA
CATCCCGGTTTGTCCGCTGCCTGCTGAAGGATCCCTGCCTGCTCCCTCCCTTGGCCAGGTATGACCCTGATTTCCGATCC
TATTTCTCTACATATGTGGATTCTTCACTCGATCTCACTTGGAGAAGACGCCGATATCAACAATTAACTAGTCCATGCTC
TTCTTTT-TTATTTGTCAGTTCATTCAAATAGAAGAAAGGAAAAATAAGCCAGATTTCTGTCTATTAGATC---------
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-------------------GAGGCAGAGAGAGATTTGAAGCGGAACCATGAATCGCCGTTTCGTCAATCTGCTGGTCAAT
AGGTTGTGCGCCCCTCGACCCGCTTACAGGCTGCACTGCATCGACCCCGCAACCTTGTTTTACCCTACCGGATCGCCACA
GCCAGCAGATCCAGCTGCCATAAACGACAGC------------GCTCCAGCTCCTGGGAGGTTGCCTGCGCCCACCATAT
CCTTCGACTGGCCCTGCAAGCCGCACCAATCCGGCTGGATGGATTTCATGGCCTTCAAGAACAACATCATTGCCGTCGAC
CACGAGGGCCGCACGCTCCTCTACGACACCGCCTCCAGGGCAGTCCGGGCCATG--------------------------
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>SNPs
------S-------------------------------------------------------------------------
SSSS---------S--S---------------------------------------------------------------
---S---SS--SSSSSSSS-------------------------------------------------------------
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------------------------------------------------------------------------------SS
SSS------------------S-----S-SSS---SSSSS-SS-------------------------S---------S-
----------------------------------------------------------S-------------------S-
---------------------------S----------S-----------------------------------------
-------S------S------------------------------S---------------------SS--SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS-------------------------------------------------------------
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-------------------------S-----SSSSSSSSSSSS-------------------------------------
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-----------------------------------------S--------------------------------------
-----------------------------------------------S-------------S------------------
----------------------------S---------------------------------------------------
----------------S-S----------------------------S--------------------S-----------
-----------------------S------------------S-------------------------------------
--------------------------------------------------------S-----------------------
----S---------------------------------------------------------------------------
---------------------------------------------S----------------------------------
---------S---------------------------SSSSSSSSS----------------------------------
-------------------------------------------------------------------S------------
--------------------------------------S----------------S------------------------
------------------------S-----S----------------S-----S--S-----------------------
-----------------------S--------------------------------------------------------
----------------------------------------------------------------SSSSS---S-------
--------S-------S-------S-------------------------------------------------S-----
-----SSS---SSS----------------S--S----------------------S---------------------S-
----------------------------------------SS------S-------------------------------
--SS--------------S-----------S----------S--------------------------------------
---------------------S----------------------------------------------------------
-----S------S--------------SSSSSS-----------------------------------------------
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
--------------------------------------------------SS---------------------S------
S----------------------------------------------------SSSSSSSSSS---------S-------
------------------------S-S------
>forward_1119
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-----------------------------------------------------------CAGAACCTCACGCACCTTCT-
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>reverse_2518
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-------------------------------------TTCTGGGCTTCTGGCAAGTT-----------------------
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>forward_2149
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-------------------------------------------------ACGACTCGGATGCTGATGAC-----------
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>reverse_3388
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---------------------------CCCAACAATTGCAGGACACA---------------------------------
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