>input_sequence_69141
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------------------------------------------------------------------------ATGGCAGC
AAACGCGGCGCCTT---------CGCCGCTCCCGCTCGACGGCCGCGTCGCGCTCGTCACGGGCGGCTCCCGCGGCATCG
GCCGGGAGGTGTCCTCCCACCTGGCCGCCCTCGGCGCGCGCGTCCTGATCAACTACGCGTCCGACTCGGCCAGCGCCGCC
GCGCTCGCCGCGGAGCTCAACTCGC------------GCGGCCTCCGCGCCGTGGCGGCCCAGGCCGACGTGTCCGACCC
GGCCGCCGTGCGCGCGCTCTTCGACCGCGCCGAGGAGGCCTTCGGCTCCCCGCCGCACGTCGTGGTCGCCTGCGCGGGGC
TGCTCAACCCCAAGTACCCCGCGCTCGCCGACACCACCGTGGAGGACTTCGACGCCATGTTCGCGGTGAACGTGCGCGGG
ACGTTCCTGGTGTGCCGCGAGGCGGCCAACCGCGTGCCGGCCGGCAGCGGCGGCCGCATCGTGACCTTCTCCTCGTCCAT
CATGGGCACGCTCCTGCCGGGCTACGCGGCGTACACGGCGACCAACGGCGCCGTGGAGGCCATGACGAGGATCCTGGCCA
AGGAGGTGGCGTCCAAGGGGATCACGGCCAACGTGGTGGCTCCAGGGCCCGTGCGCACGGAGCTGTTCCTCGCCGGCAAG
GACGAGGCGTTCCTCAAGAGAGTGGAGGCCCAGTCCATGGGGCGCATCGCCGAGACGACGGACGTGGCGCCGGTGGTGGC
CTTCCTGGCCAGCGACGCCGCCGGGTGGGTGAACGGTCAGGTCATCAGGGTCAATGGCGGGTTCACGTGA----------
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>chr1D_1_TraesCS1D01G344900
AAAAAGATTAAGCTGCCCAGCAAACAGATCATGGAACAAAGGCAACCAATCTCCTTTAATAATAAACCATCATTTCTTAT
AGAACTCCGCTGGAAATCCATCTGGTCCAGGCGCTTTGTTAGTTTCCATTTGTGAGACGGCATCAAATACCTCTTTCTCG
GTAAAAGGAGCCGTCAGAACATCATTCTCCACAACTGTGAGCTGAGGAACATCCTCAACCCTGGACTCATCCAGAGACAC
ACAGTTATTGTCTGGAGGACCAAACAACTGCTTATAGAATTCAGTAATGTACAATTTTAGGTTCTCTTGTCCTACAATTG
TACCCTCATCTTGCTCAAGCTGAAAAATCCTCTTCTTTCGATGCTTATCATTAGCAATCATATGAAAAAATTCAGTGTTC
GCGTCCCCCCGGACTATGTTCGCGTCCCGTTGCTACAAAATGGGCGCACCATGTCTCCACTTTCTCACCATCGCCGCCCA
TAGCCTCCACTTTCTCACCACCGCCACCCACAATATACACGGACGTTTTTGGTGGACATGGCAGCACGCGGCTAGCACGG
TGAGGTCGATGTTGTTGGTCAGTCAGCGGAGAAAACAGGGTTGTGGAGCTCTATGGTTGTTTCCTGCCTGCCACCACAAA
CGATC--------------------T----CATCAAATGTGTCATCGAAAAGAATAAGGTTAGAAAGATCTGGTGGGTGG
TCGTGTTCAAGTGTTTAACCACCTGGAATTTTGAGAGCCGTCTTGG-----TCATGATCAGTCCATACGTCACTTTGCAC
GCCATCGTGTGACGATTAACAGGAGCAGAAGTGCTATACGTCGGGCCACTTCCCATGCCTATATAACGCATTGCCATTCG
TTTTACAGCCACGGGGCAAAATTAACCGGGTGCACAAACAAGAAACACG-ACAGAGCAGACACGTAAAGCGAGCAAGAAA
ATCGTGAGCC-AGTCACTCGCGCCACGTAACGAGCCAGCAGTCGGCGA-CAGGCCGCTTGGTTTTTGTTGCCATGGCAGC
AAACGCGGCGCCTT---------CGCCGCTCCCGCTCGACGGCCGCGTCGCGCTCGTCACGGGCGGCTCCCGCGGCATCG
GCCGGGAGGTGTCCTCCCACCTGGCCGCCCTCGGCGCGCGCGTCCTGATCAACTACGCGTCCGACTCGGCCAGCGCCGCC
GCGCTCGCCGCGGAGCTCAACTCGC------------GCGGCCTCCGCGCCGTGGCGGCCCAGGCCGACGTGTCCGACCC
GGCCGCCGTGCGCGCGCTCTTCGACCGCGCCGAGGAGGCCTTCGGCTCCCCGCCGCACGTCGTGGTCGCCTGCGCGGGGC
TGCTCAACCCCAAGTACCCCGCGCTCGCCGACACCACCGTGGAGGACTTCGACGCCATGTTCGCGGTGAACGTGCGCGGG
ACGTTCCTGGTGTGCCGCGAGGCGGCCAACCGCGTGCCGGCCGGCAGCGGCGGCCGCATCGTGACCTTCTCCTCGTCCAT
CATGGGCACGCTCCTGCCGGGCTACGCGGCGTACACGGCGACCAACGGCGCCGTGGAGGCCATGACGAGGATCCTGGCCA
AGGAGGTGGCGTCCAAGGGGATCACGGCCAACGTGGTGGCTCCAGGGCCCGTGCGCACGGAGCTGTTCCTCGCCGGCAAG
GACGAGGCGTTCCTCAAGAGAGTGGAGGCCCAGTCCATGGGGCGCATCGCCGAGACGACGGACGTGGCGCCGGTGGTGGC
CTTCCTGGCCAGCGACGCCGCCGGGTGGGTGAACGGTCAGGTCATCAGGGTCAATGGCGGGTTCACGTGAGCTACTAAAA
TTTACTCCCCCGAGCACCACACGTTAAAGCCGCGGCTTGAACTCGAGTGGGCTGGCAGCTACCCCAGCTGCCCAGCCAAT
GGGTGAACGCCCCGTCCTCATTAAAATTTACTCATAGTTTGGCTTTTTCAGGGGTATGCTAGTTATTTTTCTGTTTTTGT
GTCACGTTCGGGTATGCTAGTGTATTTGTTTTCTCTGTCTGTTTGTGTGGGCTTCGGTTGTGTTTCTTTTCTTCTTATGG
TGGTGTTGGGCTTATTGTTTCGACATGGATTTGTCCACGTGGTTTGGGATCTTAACTACTGCTGTCATTTTTTGTTTATT
GCCTTTTGGTTTGGGAAATTACGAGGAAAAAACTACTAAGTACTCCTCCGTTCATAAATATCAATATTTCAACATGGATT
TCATAGAAATGAATGAATAAACACATTAAAACGTATCTATATATTTGTTTTGGAAAAAAATAGACATCTTATGTTTGTGA
ACGGATAGAATATAAGGTATGACTACCACGAACGAGACAGTGTGCCACTTGGGAAGATATATGCTAAGCATGAGAAAATA
TGCAACCCACAATGTACTTGATAAACAGAGTCTTGGCTCATTGGTTATTCAATTTCTAGAATATACAGGTAGTACACAGA
GGTTTTTCGTTAGTTATTGAGGGTCAAGC-TGATGTGTGGCTCAGACAAAAATCTTTGAGGAGCAGACTTGATGTGTGGT
GTGACTACACTTCAAGATAAAACTTAGTACTCATACTAAAAAGATTTTTGTGTACGGTCAACATGGCAATGGGTACTCGC
TACCCACGAACCTAACGGGTAAAAACCCTATTAGG--TAAGGGTTTTAGAAAGTTAAATATCCATGGGTTTGTAAATGAG
AAAAAAAGTACACAACGGATAAACTGGGTTGTTTTTGTTGTTTGGTGCGTGTGAGTTGTCGTTTTTGGGCTAGTTTTGCT
CTCCTGAGTCCTTGCACTTGTGCAGGTCTCTTC
>chr1A_445
ACTTCCTCACCACCACCGCCCATAGC------------------------------------------------------
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------------------------------------------------------CTCCACTTTCTCACCACCGCCGCCCA
TAGCCTCTACTTTCCT--CACCGCCGCCGACAATATACACTGATGTTTTCGGTGGACATGGCAGCGTGCGGCTAGCACAG
TGAGGTCGATGTTGTTGGTCAGTAAGCGGAGAAA--AGGGTTGTGGAGCTCTATGGTTGT-----------CACCACAAA
CGATCGAGCAGCAGCGGAGCCGCCGT----CATCAAATGTGTCATCGAAAAGAATAAGGTTAGAAAGATCCGGTTAGAAA
GA----TCAAGTGTTTAACCACCTGGAATTTTGAGAGCCGTCTTTG-----TCATGATCAGTCCATACGTCACTCTGTAC
GCCAT----------------GGAGCAGAAGTGCTGTACGTCGGACTACTTACCATGCCTATATAACGCATTGCCGTTCG
TATTACAGCAACGGGGC-AAATTAACCTGGTGCACAAACCA---------ACAGAGCAGACACGTAAAGTGAGGTAGAAA
ATCGTGAGCC-AGTCACTCGCGCCACGTAACGAGCCAGCAGTTTGACGGCAGGCCGCTTGGGTTTTGTTGCCATGGCGGC
AAACGCGGCGCCTTCGGAGACGGCGCCGCTCCCGCTGGACGGCCGCGTCGCGCTCGTCACGGGCGGCTCCCGCGGCATCG
GCCGGGAGGTGTCCTCCCACCTGGCCGCCCTCGGCGCGCGCGTCCTGATCAACTACGCGTCGGAATCGGCCAGCGCCGCC
GCGCTCGCCGCGGAGCTCAACTCGCGCGGCGGCGGCGGCGGCCTCCGCGCCGTGGCGGCCCAGGCCGACGTGTCCGACCC
GGCCGCCGTGCGCGCGCTCTTCGACCGCGCCGAGGAGGCCTTCGGCTCCCCGCCGCACGTCGTGGTCGCCTGCGCCGGGC
TGCTCAACCCCAAGTACCCGGCGCTCGCCGACACCACCGTGGAGGACTTCGACGCCATGTTCGA----------------
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----------------------------------------------ATTCAATTCCTAAAATTTACAGCTGATGCACAAA
TGTTTTTGGTTAGTTATTGAGGGTCAAGCCTGATGTGTGGCTCAGACAAAAAACTTTGAGGACCAGACTTTATATGTGGT
GTGACTACACTTCAAGATAAAACTTAGTACTCATACTAAAAAGATTTATGTGCATGATCAACATGGCAATGGATACCCGC
TA-CCATGAATCAGACGGGTAAAAACCATATTAGGTATAAGGGTTATGGAAAGTTAAATACCCATCGGTTTTTAAAGGGG
--AAAATGCACACAACGGGTAAATTGAATTGTTTTTGGTGTTGGGTGCTTGTGAGTTGTCATTTCTGGGCTAGTTTTATT
CTCCCGTGTCCTGGCGCTTGTGCAGGTCT----
>chr1B_594
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---------------------------------AACAGGGTTGTGGAGCTCTATGGTTGTTACCTAGCCGCCACCACAAA
CGATCGAGCAGCAGCGAAGCTGCCGTACGTCATCAAATGTGTCATCGAAAAGAATAAGGTTAGAAAGATCTGGTGGGTGG
TCGTGTTCAAGTGTTTCACCACCTGGAATTTTGAGAGCCTCGTGGTCATGATCAGTATCAGTCCATACGTCACTCTGTAC
GCCATTGTGTACGTCGGAC------------TGCTGTACGTCGGACTACTTCCCATGCCTATATAACGCATCGC----CG
TTTTACAGCAACGGGGC-AAATTAACCTGGTGCACAAACAAGAAACAACTACAGAGCAGACACGTAAAGTGAGCAAGAAA
ATCGTGAGCTAAGTCACTCGCGCCACGTACCGAGCCAGCAGT-----------CCGCTTGGGTTTTGTTGCCATGGCAGC
AAGCGCGGCGCC---------------GCTCCCGCTCGACGGCCGCGTCGCGCTCGTCACGGGCGGCTCGCGCGGCATCG
GCCGGGAGGTGTCCTCCCACCTGGCCGCCCTCGGCGCGCGCGTCCTGATCAACTACGCGTCGGACTCGGCCAGCGCCTCC
GCGCTCGCCGCGGAGCTCAACTCGCGCGGCCT---CGGCGGCCTCCGCGCCGCGGCGGCCCAGGCCGACGTGTCCGACCC
GGCCGCCGTGCGCGCGCTCTTCGACCGCGCCGAGGAGGCCTTCGGCTCCCCGCCGCACATCGTGGTCGCCTGCGCCGGCC
TGCTCAACCCCAAGTACCCCGCGCTAGCCGACACCACCGTGGAGGACTTCGACGCCATGTTCGCGGTGAACGTGCGCGGG
ACGTTCCTGGTGTGCCGCGAGGCTGCCAATCGCGTGCCGGCCGGCGGCGGCGGCCGCATCGTGACCTTCTCGTCGTCCAT
CATGGGCACGCTCCTGCCGGGCTACGCGGCGTACACGGCGACCAACGGCGCCGTGGAGGCCATGACCAGGATCCTGGCCA
AGGAGGTGGCGGCCAAGGGGATCACGGCCAACGTGGTGGCCCCGGGGCCCGTGCGCACGGAGCTGTTCCTCGCCGGGAAG
GACGAGGCGTTCCTCAAGAGGGTGGAGGCACAGTCCATGGGGCGCATCGCCGAGACGACGGACGTGGCGCCGGTGGTGGC
GTTCCTGGCCAGCGACGCCGCCGCGTGGGTGAACGGTCAGGTCATCAGGGTCAATGGCGGGTTCGCGTGAGCTACTAAAA
TTTA----------------------------------------------------------------------------
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>SNPs
-SSSSSSSSSSS-SS--SSS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S---------
-------S------SSSS-------S--S-----------S--S-----S---------------SS-----------S-
-----------------------S-------------------------------------S---SS-S-----------
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--------------------------------------------------------------------------S--S--
-----S----SSSSSSS-SSS--------------S--------S-S----------------------------S----
---------S-------S---------S-------------------SS--------------------S----------
------------------------------------------SS-SSS-------------S------------------
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-------------------------------------------------------------S------------------
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---------------------------------------------------------------------------S----
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-----------------------S-----S---------------S-------------------------S--------
------------------------------------------------------------------S-------------
-----------S----------------------------S--S--------------------------------S---
--------------------S--------S--------------------------------------------------
S----------------------S----------------------------------------S---------------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---S---S-----S-SS-S----S-
S------S--------------------------------------------S---------S-------S--S------
-----------------------------------------------S----S-S-S---------------S---S---
--S---S---S-SS-------------S-----------------S-S------------S----S-----S----S-S-
SS----S-S---------S----S--SS---------S----S-----S-----------S---S------------SS-
----S-S-----S--S-------------SSSS
>forward_448
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----------------------------GTTGCTACAAAATGGGCGCA--------------------------------
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>reverse_2047
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----------------------------------------------GTGGGCTTCGGTTGTGTTTC--------------
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