>input_sequence_69138
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-------------------------------------ATGGTATATCTTTCGTCTCACGTCCTCCTCAAATCAAATAGTA
AAATTCTCACGTCTATATATACA------------TATATGAATGTATCCAAGGTGCAATCCAACCACCACTCGGCTCGC
ATTCAAGCAACA----ATAGGAGGAAGTGCAAAAGCAAAGCAAGAGATGGAGGCGGCTGGGTATCGCTCCCGCATCGTGG
CTGAAGTCGACCCCCGCAGTGAATGGGTTCATGGGGACGAGTTCGACACGCTCATCGTCAACGTCTCAGGTATACCGT--
--TGCTGCTTTTCCAACCATTTCTGCG----GG----AACTGAATCCACTCGTTCCAAACA----TGTTCTGCCATATTG
ACAC-------GCATG--------CCGCCGTTGCAGGATTCACCAGGGACCAGCTCAAGGTCCAGGTGGAGCCGTCGGGG
AGCCTCAAGATCAGCGGCGAGCGCGCCCTCAACGGCGGCCGCCAGTGGTGCCACTTCCTCAAGCGGTTCGACCTCCCCGG
CGCCTGCGACGCCGCGGCGATCAAGGTCCAGCTCGACAAGGGCGTCCTCTACGTCCAGGTGCCCCGTTCCACGGACGACA
GCCAAGAGGACGCGCTGCGAGAAGAGGAGGACGCTGGCGCGTTCTGGAGCGGCGGCCACACGGCGGCGTGGCGGGCCGAT
GAGCACCCGGCGTGGCGTCTGGCCAAGAGCCTGGGCGAGCACCGATACGTCGTCCTGAACGTCGTGCTCGCCGTCGTGCT
CCTCTGGCTCGTCGCGTTCTCCAACAGCAAGCAGAGCGGTGGGCAGATCAAGAACGAATGA-------------------
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>chr1D_1_TraesCS1D01G138300
ACCACAGTCCCTCTAACCATCCAACCACAGGTTGGTTCGCCAATTTTCAGTGAAAATTAGTATGTAAACC-TTATGTGTA
TGCTTGGGTAACAGTTTCCCACGCAATGCCGGAGCATGACGAAAATTGTAGAACGTGACAAGGATGGACCAATAACTTGC
AAAATGGGCTATTGCTGTTTTTTGG--CAAATTTGCATCATT-TTTTCTAAATTTTCTTGCCCTTTCCATTCATATGCCT
CAAGTTGGATCTTTCGGAAAAATACAGATGCCTTAGGTTGGATCCATTAACATTCTTGGGCAAGGTCATCGGGGCAAGGC
GGTTCTCTGGAT-CTCATGCTTGTCGACTGGGAGCTTTGGAAGTAGAGAAACATTTGG----------------------
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-------------------------------------------------------------------GTCAGGCTCAACA
AATTCGCCTTATTGATGATGGTGGTGGCGATCATCAAGAGTGAAGCCAAGAATTAGGCCATCA-TCGAGGCCAGGCATTT
GAGTGTATTGATGTCGCGAGAGTAAGCTTTGTATTTTCCTATCCAGGTGTTGGG---CCTCCTCAAAATAATTAATGTAC
GCTTCTTAATTTATAAAGAAGATAAGGAA-------------------------AAACTTTTGCCTCCATTTCTAAATCT
AAAAGAAAAAAAAG--TAGAAGGGGGCT---ATATCCGCAATCTGACACTCCATTGAGGATTCATGAGCCCTTCTCAATC
TTCTTATCCTGATTCCTGCCCCCCTAAGCTTACCTTTCCACTCATATGGCTCAGATTGCAACTTACCGAAGAAACAGATG
CCTTAAGTTATAAAATGGAAGTAAGTTGCATCAAGTTTCGAACGAAAAGAGAAGAAGAAGAA-GAAGAAGAAGAAGCAGA
AGAGATGCATGGTAGCACTTCAGGGTCAAGGAAAAGACCTGCACACAAGCAAGACGAATCACCTAGTAGGTAAGAGT---
-----------AGACTATATGACCCACG------------GATATATATATTTCAGCATGCTGT-C-GGCAAGGCAAGGT
GAGGTATCCATTCCTTTCCTTCATCCCCATCGCAAATATGGTATATCTTTCGTCTCACGTCCTCCTCAAATCAAATAGTA
AAATTCTCACGTCTATATATACA------------TATATGAATGTATCCAAGGTGCAATCCAACCACCACTCGGCTCGC
ATTCAAGCAACA----ATAGGAGGAAGTGCAAAAGCAAAGCAAGAGATGGAGGCGGCTGGGTATCGCTCCCGCATCGTGG
CTGAAGTCGACCCCCGCAGTGAATGGGTTCATGGGGACGAGTTCGACACGCTCATCGTCAACGTCTCAGGTATACCGT--
--TGCTGCTTTTCCAACCATTTCTGCG----GG----AACTGAATCCACTCGTTCCAAACA----TGTTCTGCCATATTG
ACAC-------GCATG--------CCGCCGTTGCAGGATTCACCAGGGACCAGCTCAAGGTCCAGGTGGAGCCGTCGGGG
AGCCTCAAGATCAGCGGCGAGCGCGCCCTCAACGGCGGCCGCCAGTGGTGCCACTTCCTCAAGCGGTTCGACCTCCCCGG
CGCCTGCGACGCCGCGGCGATCAAGGTCCAGCTCGACAAGGGCGTCCTCTACGTCCAGGTGCCCCGTTCCACGGACGACA
GCCAAGAGGACGCGCTGCGAGAAGAGGAGGACGCTGGCGCGTTCTGGAGCGGCGGCCACACGGCGGCGTGGCGGGCCGAT
GAGCACCCGGCGTGGCGTCTGGCCAAGAGCCTGGGCGAGCACCGATACGTCGTCCTGAACGTCGTGCTCGCCGTCGTGCT
CCTCTGGCTCGTCGCGTTCTCCAACAGCAAGCAGAGCGGTGGGCAGATCAAGAACGAATGAGGCAAGCAATACACATGCA
CGCACAGCG--GGACAGTCGTACAACACAACAGATCGATG----------------------------------------
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-------------------------TAAATAGGCAGGATTTGGAACGCGGGAATTTTCAAATCCAAGTCTCAAGATATCA
AGCACCATCGGATATAAAGACATACTACTA--------------------------------------------------
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------------------------------------------------------CTACACATG--GTCCCACTTTATTGG
CTCTGTATCAAGTTCTTGCATT------------------------------GATGATCTGAAA-GAGTTCAATGTAACC
ACAGAATATATCGTTTA---------------------------------------------------------------
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----------------------------------------------------------------------AGGTCCATAA
AACTTGCACGCCAACTTGTGATTAGCTCATGACCTCATGTCGTCGCATGTGTCT--GGACATACGGTCCTAGTTTGAGAA
ACACACGATCTCCAACAGAGAAAATGTGGTCT------TGCT--------------------------------------
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----------------------------------------------------------TACCTGTTTACGCTTTCATGTG
CTGTTGAGTCCTCAATAAGTGTTGTCTGATGGATCCAGTCACGACTTTCCATGAAGCAAACCATTGTTGTAGGTCAAGAG
TAGCTACAGTATATGAATATGAAATGCCAAAGTATCTGGGTTGTTGTCCATACACCACCTTCAAAGGAGAGGTTCCAAGT
GATGAATGCTAGTTAGTGTTGTAC-----------------------------------------------CAAACCTTT
TGCTCCACTTATTTGGATGCGCAATCATGAAGCATTTCAAACAACACTAAATTTTCAGAATAGAAAGTTCACCTGGAGTA
ATGAAAAGGACTTCCCGACTTTGGTTGCTTTAGACAAAGTCTTCCACAACCATGCTTGGGATAGCTTGTTCCCCAGCCTC
CTCCTACATGCTACATCCCCTGTTGTGTCTGATCACTACCCACTGGTGCTCTCCAATGCCAGTGCGCCGCTGAGACAAAG
CAAAGTTCAGATTCGAGGGGTTTTGGCCAACGTTCTCAAGGTATAAGAAGGCAGCCTCTGAAGCTTGGAACAAACATGTT
CGTGCATAGTGCGCAACTGCGCATTCAAAAATACAAAGTTGTTGCGCATGGCGAAAGGGCTCAAATCCCGGAGCAAGGAG
CTTTTTACCGACGCCAAGGTGCAATTTCA
>chr1A_43
ATTTTC-----------------------------------------CAGTGAAAATTAGTATGTAAACCCTTATGTGTA
TGCTTGGATAAAAGTTTCCCATGCAATGCCAGAGCATGACAAAAATTGTAGAACATGACAAGGACGGACCGAAAACTTGC
AAAATGGGCCATTCTAGTTTTTGGGGCCAAATTTGCATCATTTTTTTCTAAATTTTCTTGCCCTTTCCATTCATATGC-T
CAAGTTGGATCTTTCGGAAAAACACATATGCCTTAAGTTGGATCCATTAACATTCTTGGGCAAGGTCATAGGGGCAAGGC
GGTTCTTTGGATCCTCATGCTTGTCGACTGGGAGATTTGGAAGTAGAGAAACATTTGG----------------------
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-------------------------------------------------------------------GCCAGGCT-----
--------------ATGATAGTGGTGGCGATCATCAAGAGTGAAGCCAAGAATTAGGACATCA-TGGAGGCCAGGCATTT
GAGTGTATTGATGTCGCGAGAGTAAGCCTTGTATTTTTTTTTCGATGTGTTGGG---CCTCA-------AAATAATGTGC
GCTTCTTAATTTATAAATAAGATAAGGAA-------------------------AAACTTTTGCCTCAATTTCTAAATCT
AAAATAAAAAAGAG--TAGAAGGGGGCT---ATATCCGCAACCTAACGCTCCATTGAGGATTCAT---------------
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>chr7D_99
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-------------------CACGCAATGCCAGAGCATGACGGAAATTGTAGAACAGGACAAGGACAGGCCAACAACTTGC
AAAATGGGCCATCAATGGTTTCTGGGCCAAATCTGCATCAGTTTTTGTCAATCTTCTT--CCCTTCCCATTCATATGCCT
CAAGTTGGATCTTTCGGAAAATTACAGATGCCTTAAGTTGGATCCATTAATATTCTTGGGCAAGGGCATAGGAGGAAGGC
AGTTCCTTGGATCCTCATGCTTGTCAACTAGGAGCTTTGGAAGTGTTAGAAGGGAGAGAGGTATTGGCAGAATATGATGG
ATGTTGTATTGAGCCTCACGGGCGAGTATATATAGGAGTACAGACTTGGAGGGCAAGAAGCCTCTCTTAGAGATAAGGTA
GGAGATGGATTAGAAATCCTGGAGTACCAAATATATGTAGACCAAATATATCTCTAACACCCCCCGCAGTCGTAGCGCTA
GCGTTGCGAACAGCAGGAGCATCACGGATGATCAGACGGGAGAGAATAGCAGCCGACCGGCTAACATCCTCCCGCAGTCG
TAGCAGGAGCATCATGCACGGTGTCGCGTCGCGAACGCGTTGACTATAGAGGAAGCCGACGAGTTGCTCAAGCGGAAGAT
AGCCATTTCTGTCGTTTGTCGAAGTAGCCGAGAGCGTAGGGTGGTGTAGCCGTGGTCGAGGTAGCCATGCGAAGAATGTC
GTGGTCGATTTCAAGTCAGGGTAGCCGGTGTCGAAGTAGTCGCCGTGGAGCCGCGGGCGAAGGAGGCGCCGAGTTAGTCA
TGGGCGCAGTGGTGTCGATGTAGTGGTGCGCCGGAAGGAGTATGGTGTTGACGAGGTGTTGTACCGGGTTTGCCAAACCC
GGGGACACGTCGTAGACGAAGGCACGCGCCGGTGTTGCCAGCACCAGGCATGCGTAGACGAACAAAGAAGAAGTTAACAA
AGTGCTGCACCAGGCTTGCCCGGCCCGCGGACACGTCGTGGACGAAGGCATGCCTCAGTGTTGCCAGCACCGGGCATGCG
TAGATGAGGGACCTGCATGAGCTGTATGCCATGTCGAGGTGTTGGAGGGGCCAGCAGAGAAGGAGACTCGACGACGGTTG
TGGCGCCAATCGGCGTGGAGCCGATGTCACCAACGGTGGTCGGAGTAGCCGAAGTGGTCGAGGTAGATGACGGCGATGCT
GGCGATGGTTGGTGCTGGATGAAGATGAAGGGGGTGGACTGGCGTCGCAGCTCGGGTAAACGAGCTGCAGCGACGCCGAA
GAAGAGCGGCGGCCTGACGGCGGCGGCGGCGGCTAGATTAGGAGTGCGGCGGCGGTGCTCGAAGTAGGCAAAGAACCCGA
TAGCATGACGAAGACCGGCGCGGATGATGGCGTTCCCGCGCCAAGGGAGGCGGTGTGGCACATACCACGGGAGGTCGACG
CGCGGGGATGGCGCTGGACCACGGGTCGCGGCACGACGGCCCAAAGGGGTGACGCAGCGGCAACAGGCGGGTCGGGGCGA
CGACAGGAAGACCTCGGGGCGGCTGCGGGGACTGCGGGACGTGGCGCTGCGGCCTGAAGAGGCGATGGAACGACGGCACG
CGAGTCGGTGCAGCCACCGGGACGGCCTCGGGCGGCGGCGGAGACCGCGTGTCACGCTCGCTACGACCCGATGGGGCGAC
GCAGCGGCAGCACGAGGGTCCGTGCAGCCACGGGACGACCTGGAGAGGACGGCCTCGGGGTGGCAGTAGACCGCAGGCTG
CGACACTATGGCCTGAAGGGGCGACGCATGGGGCGGCGGCGCTGCGACCCGATGGGACGACACAGCAGCAACCCGATGTT
CGATCGATGTAGGGCGTGCCGTACTCGGGACAATCTTCGTGGGACCTGCGGAGACGCATGCGGATGATTGATTAGACCCA
AAGCACGGTGGGCGATATCAAGAAGAGCGGACATGTCCTGGCAGGAGCGGGACACGAGCTGTGTATGAGAGCTGAACCAG
ACATCGTGCATGCGTGCAAGTATATACACGCACTGGATGCATGAACGTGCGATCAAGACAGACATGCACGTGATGCTCAA
GTGTCCTCGCTGTGACGTGGATCGATGGGTCAACTCGGGCGCCCGAGCAACCTAGGCACACGTCGCGTGGATGGACACGC
CTGCGGACGATGCGAACAGCGGCCGCCCCCGGTGCGCTGCCAAGCTTCGGTCGCGGGGATGCAGCCAATGGAGGCCGCAT
GCCGCGATAAGCCAGGGGAGACAGGCCGGTGCAGTCGCTATAAGGTCCGAGTAGAGGCGCGCTATAGACGACGGATAGTG
ATGGGCGACGCAATTCGATCTTAGATCGAAAGAAAGCACCGATCAATGCGATCGGTGAAAGAGAGAAATACCCGGATCAA
GTGATCGGAAAAAAGGCTCTTTAGGGCAGCCGGTCAACACGACCGGCGAACGAACCCTAGATACGGGAGGCGCGGCCTCC
GGCGGCGGTCATGAAGGCCGACCGCCCCGGGGACGACGTGGGGGGCGAAAGCGTCGGACGGCGGCTAGGATTGGATCGAT
TAGGCTGATACCATATTAGAATGGAGAGATGGATTGACGGAATATGATGAAGGTTGTATTGAGAAGCCTCTCCTAGAGAT
AAGGTAGAAGATGGATTACAAATCCTAGAGTACCAAATATATGTAGACTAAATATATATCTCTAACAGTCTGCCTCAACA
AATCTGCCCTACTAATGATGGTGGTGGCGATCGTCAAAAGCGAAGCCAAGAATTAGGCCATCAATGGAGGCCAGAC-TTT
TACTGTATTGATGTTGTCAGAGTAGGCTTTGTATTT-CCTGTCGAGGTGTTGGGCCTCCTCA-------AAATAATGCTC
TCTTCTTAATTTATACAGTTTTTTCCGGAACTTAATTTATAAATATAATAAGGCAAAGCTTTGCCTCCATTTCAAATCAA
AAAGAAAAAAGGAG--TAGAAGGGGGAT---ATATCCGCAACCTGACACTCCATTGAGGATTCACCAG------TGAATC
TTCTTATCCTGATCCCTGCCCCTCTAAGCTTACCTTTCCATTCATATGGCTTAAGTTGGAACATTCCGAATAAAAAGATG
CCTTAAGTTATGAAATGGAAGTA-GTAGCATCAAGTTTCGAACAAAAAGAAAAGAAGAAGAA-GGAGA------------
-----TGCATGGCACCACTTAAGGGTCAAGGAAAAGACCTGCACACAAGCAAGGT-----------------AGATC---
-----------AGACTATAGGACCCACCGCAGATATGGTATATATATATATTTCAGCATGCTGT-CCGGCAAGGCAAGGC
GATGTATCCTTTCCTTTCCTTCATCTCCACCGCAGATATGGTATATCTTTCATCTCACGTCCTCCTCGAA--------TA
AAATTCACACGTCTATATAAAAA------------TATATTAATGTATCCAAGCTGCAATCCAACCACGACTAGGCTCGC
ATTCAAGCAACAATATATAGGAGGAAGTGCAGAAGCAAAGCAAGAGATGGAAGCGGCTGGGTATCGCTCTCGCGTCGTGG
CTGAAGTCGACCCCCGCAGCGAATGGGTTCATGGGGACGACTTCGACACGCTCATCGTCGACGTCTCAGGTA--CCGCTG
CATGCTGCTTTTGCCATCATTTCTGCATGCAGG----AACTGAATCCATTCGTTCCACACACGTACGTTCTGGCATATCG
ACACGCATGCGGCATG--------CCGTTGTTGCAGGATTCACCAGGGACCAGCTCAAGGTCCAGGTGGAGCCGTCGGGG
AGCCTCAAGATCAGCGGCGAGCGCGCCCTCAACGGAGGCCGGCAGTGGTGCCACTTCCTGAA------CGACCTCTCCGG
CGTCTTTGACGCCGCGGCGATCAAGGTCCAGCTCGACAAGGGAGTCCTCTACATCCAGGTGCCCCGTTCCACCGACGACA
GCCAAGAGGACGCGCCGCGAGAAGAGGAGGACACCGGCCTGTCCTGGAGCGGCGGCCACACGGCGGCGTGGCGGGCCGTT
GAGCACCGGGCGTGGTGTCTGGCCACGAGCCTGGGCAAGCACCGATACGTCGTCCTGAACGTCATGCTCGCCGTCGTGCT
CCTCTGGCTCGTCGCGTTCGCCTACAGCAAGCAGAGCGGTGGCCTGATCAAGAACGAATGAGGCAAGCGACACAAATGCA
CGCACAGCA--GGACACTCGTACAACACAACAGATCCATG----------------------------------------
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-------------------------TAA----------------------------------------------------
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>chr1B_406
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-------------------GGTGGTGGCGATCATCAAGAGTGAAGCCAAGAATTAGGCCATCA-TGGAGGCCAAGCATTT
GAGTGTACCGGTGTCGCGAGAGTAAGCTTTGTATTTTCCTG-CGATGTGTTGGGCCTCCTTA-------AAATAATGTGC
GCTTCTTAATTTATAAATAAGATAAGGAA-------------------------AAACTTTTGCCTCCATTTCTAAACCT
AAAGGAAAAAAGAGAGTAGAAGGGGGCTATAATATCCGCAACCTGACACTCCATTGAGGATTCATCAGCCCTTCTCAATC
TTCTTATCTTGATTCCTGCCCCCCTAAGCTTACCTTTCCATTCATATGGCTCAGGTTGGAACTTACCGAAAAAAGAGATG
CCTTAAGTTATAAAATGGAAGTAAGTTGCATCAAGTTTCGAACGAAACGAGAAGAAGAAGAA-G-AGA------------
-----TGCATGGTAGCACTTCAGGGTCAAGGAAAAGACCTGCACACAAGCAAGGC-----------------AAATCACC
TAGGTAAGAGTAGACTATATGACCCACGGATATA----TATATATATATATTTCAGCATGCTGT-C-GGCAAGGCAAGGT
GAGGTATCCTTTCCTTTCCTTCATCTCCATCGCAGATATGGTACATCTTTCGTCTCACGTCCTCCTCAAATAGTA----A
AAATTCTCGCGTCTATATATACCATACATATATGCTACATGAATGCATCCAAGGTGCAATCCAACCACGACTCGGCTCGC
ATTCAAGCAACAAT----AGGAGCAAGTGCAAAAGCAAAGCAAGAGATGGAGGCGGCTGGGTATCGCTCCCGCGTCGTGG
CTGAAGTCGACCCCCGCAGCGAATGGGTTCACGGGGACGAGTTCGACACGCTCATCGTCGACGTCTCAGGTA--CCGT--
--TGCTGCTTTTCCAACCATTTCTGCG----GG----AACTGAATCCACTCGTTCCAAACA----CGTTCTGGCATATCG
ACAC-------GCATG--------CCGCCGTTGCAGGATTCGCCAGGGACCAGCTCAAGGTCCAGGTAGAGCCGTTGGGG
AGCCTCAAGATCAGCGGCGAGCGCGCCCTCAACGGCGGCCGGCAGTGGTGTCACTTCCTGAAGCGGTTCGACCTCCCCGG
CGCCTGCGACGCCGCGGCGATCAAGGTCCAGCTCGACAAGGGAGTCCTCTACGTCCAGGTGCCCCGTTCCACCGACGACA
GCCAAGAGGACGCGCTGCGAGAGGAGGA---------------CTGGAGCGGCGGCCACACGGCGGCGTGGCGTGCCGAT
GAGCACCCGGCGCGGCGTCTGGCCAAGAGCCTGGGTGAGCACCGGTACGCCGTCTTGAACGTCGTGCTCGCCGTCGTGCT
CCTCTGGCTCGTCGCGTTCGCCAACAGCAAGCAGAGCGGTGGGCAGATCAAGAACGAATGAGGCGAGCAACACGCATGCA
CGCACAGCGCGGGGCAGTCCTACAGCACAGCAGATCGATGTAATCATTTAGTAGTACT---------------TATATAT
A-------------------------------------------------------------------------------
-------------------------------------------------------------------------------G
CTGATAAAAGGGAATAAGAACCCTGTAAACAGGCAGGATTTGGAACGCGGGATTGTTCAAATTCAAGTCTCAAGATATCA
AGCACTATCGGATATAAAGACATACTACTA--------------------------------------------------
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------------------------------------------------------CTACTACATATGTCCCACTTTACTGG
CTCTGTATCAAGTTCTTGCATC------------------------------GATGATCTGAAACGAGTTCAATCTAACC
ACAGAATATATCATTTAGAGCAACTCCAACGCGTCCGCGCGCGTCCGTTTGGATCGACGCGGACAGAAAAGTCAGGCCCA
ACGCGCCGACCCAAACAGACGCGCATCCGCTTTTCATCCATCTGCCGATCAATTCCCGGTTCATTTTTGAGCCGGATTTA
CGTTGGCGCGGACACGCAACGGCCGTGCGCCCGCCTACTCCTCCCTCCAGTCCGTTGGTCGGTGGCACATTGGCCACCCT
CTCCCATTCCAACAACAAACCCTCGCCCGCCTCCTTCGTCGCTGCTCATTTCTCCGGTGACTCTGCCAGCTGCCAGCGCC
GCAACATCCCCTCTGCAACGCCGCCACCTCCCACGTCGCCCGCCAGCGCCGTCTTGCCGCCGAGGAACCGAAAGCTTGGA
GGAGCGGCAACATTTGAACAGTTCACCCAATTTTATCACGACATGCGTGATTGGGAAACTCACATGCAACTGTAAAATGA
TTTGATTGAATATATGTGGGCTCATGTGAGCAACAATAGATGTATCTTTTTTTATTCGGCTTGCAAAACTATGTGAGACA
TTTTTTCTTTTATTCGGCTTGTAAAACTATGCTATTTTATTTGGTTGAAACTATGCTATTTATTTGGTTGTGGACTATAT
GTTTGCTTGTGAAATAATGCAAAAGTTGTGTGTGAAATAATGCAAAATTTATGCTATTTGTTGAAAAAGGGCGGCCAGCC
GGCCACGCCGGCACATATGGGTCAACGTGTTGGGCACACTGCCGACCCAACTCTCAAACAGGCCGGACGCCGGCCGGACG
GCCGACCCAAATGTACAAAAAACGGACAAAAGCGCCGTCCGTTTGGATCGACGCGTTGGAGTTGCTCTTAAGGTCCATAA
AACTCGTATGC-------TGATTAGTTCATGACATCATATCGTCACATGTGTCTCTGGACATACGGTCGTAGTTTGAGAA
GCACACGATCTCCAACAGACAAAATGAGTCCAGTGTGGTGTT--------------------------------------
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----------------------------------------------------------TAGCTGTTTGCGCTATCATGTG
TTGTTGAGTCCTCAATAAGTGTCGTCTGATGGATCCAGTAACAACTTTCCACGAAGCAAACCATTGTTGTAGGTCAAGGG
TAGCTATAGTATAGGAATATGAAATGCCAAAGTGTCTGGGTTGTTATCCATACACCACTTCGAAAGGAAAGGTTCCAAGT
GATGAATGCTAGTTAATGTTGAGGCCGGGGCAAACCCCCCTTTTCGAAAAAAAGAAAAAAAAATGTTGTATCAAACCTTT
TGCTCCACTTATTTGGATGCGCAATTATGAAGCATTGCAAACAACACTAAATTTTCAGAATAGAAAGTTCACCTAGAGTA
ATGAAAAGGACTCCCCGACTTTGGTTGCTTTAGACAAAGTCTTCCACAACCCTGCTTGGGATAGCTTGTTCCCTAGTTTC
CTCCTACATGATGCATCCCATGTTGTGTCCGATCACTATCCGTTGGTGCTCTTCAATGCCAGTGCGCCGCTAAGACAAAG
CAAAGTTCAAATCA-AGGGGTTTTGGCCAAGGCTCTCAAGGTATAAGGAGGCAACATCTGAAGCTTGGAACAAATATGTT
CGTGCATTGTGCGC--------ATTCAAAAATACAAAGTTGTTGTGCATGGCGAAAGTGCTC------------------
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>chr7A_547
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----CTTAATTTATAAATATAATAAGCCA-------------------------AAGCTTG-GCCTCTATTTCAAATCAA
AAAGAAAAAAAGAG--TAGAAGGGGGAT---ATATCCGCAACCTGACACTCCATTGAGGATTCATCAGCCA-TCTGAATC
TTCTTATCCTGATTCCTGCCCCCCTAAGCTTACCTTTCCATTCATATGGCTTAAGTTGGAACATTCCGAATAAAAAGATG
CCTTAAGTTATGAAATGGAAGTA-GTTGCATCAAGTTTCGAACAAAAAGA-AAGAAGAAGAAGG-AGA------------
-----TGCATGGCACCACTTCAGGGTCAAGGAAAAGACCTACACTCAAGCAAGGG-----------------AAATCACC
TAGGTAAGAGTAGACTATAGGACCCACG------------TATATATAAATTTCAGCATGCTGTCC-GGCAAGGCAAGGT
GAGGTATCCTTTCCTTTCCTTCGTCTCCACCGCAGATATGGTATCTCTCTCATCTCACGTCCTCGGTCCTCA----AGTA
AAATTCTCACGTCTATATATACA------------TATATGAATGTATCCAAGCTGCAATCCAACCACGACTCGGCTCGC
ATTCAAGCAACGAT----AGGAGCAAGTGCAAAAGCAAAGCAAGAGATGGAGGCTGCTGGGCATCGCTCTCGCGTCGTGG
CTGAAGTCGACCCCCGCAGCGAATGGGTTCATGGGGACGAGTTCCACACGCTCATCGTCGACGTCTCAGGTA--CCGCTG
CATGCTGCTTTTGCCATCATTCCTGCA----TGCAGGAACTGAACCCACTCGTTCCACACA----TGTTCTCGCATATCG
ACAC-------GCATGCGGCATGCCCGTTGTTGCAGGATTTACCAGGGACCAGCTCAAGGTCCAGGTGGAGTCGTCGGGG
AGCCTCAAGATCGGCGGCGAGCGCGCCCTCAACGGAGGCCGGCAGTGGTGCCACTTCCTGAAGCGGTTCGACCTCCCCGG
CGTCTTGGACGCCGCGGCGATCAAGGTCCAGCTCGACAAGGGAGTCCTCTACGTCCAGGTGCCCCGTTCCACCGACGACA
GCCAAGAGGACGCGCTGCGAGAAGAGGAGGACGCCGGCCTGTCCTGGAGCGGCGGCCACACGGCGGCGTGGCGGGCCGAT
GAGCACCCGGCGTGGCGTCTGGCCAAGAGCCTGGGCGAGCACCGATACGTCGTCCTGAACGTCGTGCTCGCCGTCGTGCT
CCTCTGGCTCGTCGCGTTCGCCAACAGCAAGCAGAGCGGTGGGCAGATCAAGAACGAATGAGGCAAGCGACACACATGCA
CGCACAGCG--GGACAGTCGTACAGCACAACATATCGATGTAATCATTTAGTACGTCACAGGATCCGCTTCCATATACTC
CGCTGATAAAGAACGCTGCTATACACACGATGCCACGCAGACGATTTGTGGACGATGCTAAATTCAAGCCATGTGATGCA
CAGCAGCAGCACTGTTCTACGGTTGGACTTGACTGTCGGCTACACATCGTGTGTGCAGTTTCGTCTGCACAGCAATTTCG
CTGATAAAAGGGAATAAGAACCATGTAAATAGGCAGGATTTGGAACGCGGGATTGTTCAAATCCAGGTCTCAAGATATCA
ACCACTATCGGATATAAAGACATATA------------------------------------------------------
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----------------------------------------------TACTACTACTACATATG--GTCCCACTTTACTGG
CTCTGTATCAAGTTCTTGCATTGATTTATCAAAAAAAAAAAGTTCTTGCATTGATGATCTGAAATGAGTTCAATGTAACC
ACAGACTATAGTAT------------------------------------------------------------------
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----------------------------------------------------------------CATTTAAGGTCTGTAA
AACTTGTACGCCAACTTGTGATTAGCTCATGACCTCATGTC---------------------------------------
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>chr1A_1208
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--------------------GAATGGTTTCAT-GGGACGAGTTCGACACGCTCATCGTCGGCGTCTCAGGTA--CCGT--
--TGCTGCTTTTCCAACCATTTCTGCG----GG----AACTGAATCCACTTGTTCCAAACA----CGTTCTGGCATATTG
ACAC-------GCATG--------CCGCCGTTGCAGGATTCACCAGGGACCAGCTCAAGGTCTAGGTGGAGCCATCGGGG
AGCCTCAAGATCGGCGGCGAGCGCGCCCTCAACGGCGGCCGGTAGTGGTGCCACTTCCTCAAGCGGTTCGACCTCCCCGG
CGCCTGCGACGCCACGGCGATCAAGGTCCAGCTCAACAAGGGAGTCCTCAACATCTAGGTGCCTCGTTCCAGCGACGACA
ACCAAGAGGACGCGCTGCGAGAGGAGGAGGATGCCAACACGTTCTGGAGCGGCGGCCACACGGTGGCGTGGCGTGCCGAT
GAGCACCTGGCGTGGCGTCTGGCCAAGAGCCTGGGCGAGCACCGGTACCTCATCCTGAACGTCGTGCTCGCCGTCATGCT
CCTCTGGCTCGTCGCGTTCG------------------GTGGGCAGATCAAGAACGAATGAAGCAAGCAACACACATGCA
CACACAACACGAGGCAGTCGTACATCACATCAGATCGATGTAATCATTTGGTACTT----------------ATATACAT
A-------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
CTGATAAAAGGGAATAACAACCCTGTAAATAGGTAGGATTTGGAATGCAGGATTGTTCAAATCCAAGTCTCAAGATATCA
AGTACTATCGGATATAAAGACATACTAGTAGGATGCGAACTAGGAGCGCTCGACGGCGATGCTCACCAGAATCTCACCCG
CTGCTCTGTAGTCTAGGGATTAGTGCATAATTAGATGAAATGAATAGCTGTTGTTGAATACACCGCTCCATCGTAGATTG
ACACAGTGCGTTCCTGTTTGCCCACATTAAGTTAGGGCCAAAGCCGGACTGAAAGCACATAAAAGTACAACTCGTCATTT
ATTGGACTGCAAGGACTATTGAGCCACAGATACTTTATATCCAACTTATTAATAACACCAGTTGTACTGTTCAAGATGAA
GACTATCCTGGCATGAGTTATGTGAAACCGTGTTTAATAAAAATAAATAACCGTGTATTGCTATCTAATGAAAATAAATC
TATGTGCCCATCCAAGCAAAATGTATGTTATTAACACAAGTGTGTCTTTCACGATCATATATTTCTCAAAGGAAATCGAT
ACGCTAGCGAGACGCATGCATGGTTGTGATTCCTGGTCTAAATTCTTTGAATATGGTAGCACCAAGCAAAGGGGACCCAC
GCCTAGGCATGTAGGGTTTGTCTGCTAGTTCAGACATAGAGCATTAATGAGTGTGGTGTGGAACGCACCTTAATAATGAC
TTCGACACGAAAGTCTTAGCCCGTACCAAGAATTCTAGCGCCAGATTTATTGTCAACCAGGTTTTTGTACTTTATATCAC
CTTACCAGATGTAAAAATTCAAAAAGGTGTGTACTGGTTGTAAAAAAACTAAATTACAGCCCACGGTTCAAGACGTGAAA
CCCCTGCACCGCTAATAAATGAATTAAATGAATTTGCTGTCCGGTCAGGTAATATAAACCCAAACAGATCAACTAGGATG
GTTAGAAAAAACATTATTTTGTGGATGTCAAATGGATATAAAATGGTGCGAGAAGGAAGAAAAATGATAGGGAGAAGTGA
TGAGGGGCCAGTTGGAAGGACGAAGAGCGTCCTTCATTTAGTTTAGATGGGTGGTTGGCGGTTTGTAGTTGAGTTCAGCT
CGCGCAGCCGAATTGAAGAATCCGTACATAACCGCGTGGACTTTAAGGCCTATACAAGTGAAAAGCAAATGAGAATACAA
GAGGATAAAGTTAGTAATACCATGTGGTTAATATAGTGGTTGCGGATCCCAAGATGATCGGGTGGGCATGATTCTGGTGG
GCAGTGTCGCCGAGTGCTCCTATGCAATTTCGCATACTAGTACTACTACTACTACTACACATG--GGCCCACTTTATTGG
TTCTATATC------------------------------AAGTTCTGGCATTGATGATCTGAAACAAGTTCAATGTAACC
ACAAAATATATCATTTA---------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------AGGTCCATAA
AACTTGCATGCGAACTTGTGATTAGCTCATGACCTTATGTCGTCACATGTGTC--TGGACATACAGTCGTAGTTTGAGAA
ACACACGATATCCAATAGAGAAAATGTGACGTGCTTACTCCCTTCGTATTTGAAAGAGTGTACTTTCAACTTTATTGGAG
GGTCAAACTATCTCAAAGTTTGACCGAGTTTGTGCAAAAATATGTCAATCCTTGTGAAACCAAATAGGTATATGACAAAA
AATATATTTTATCATGAATCTAATGCTACTAATTTGATGACATAAATGTTGGTCTATTATTGTATAAATACGGTCAAACA
TAAAATAGTTGGACTTTCCAACAAAGTTGGAAGTACACTCTTTCAAGGACGGAGGGAGTACCTGTTTGCACTTTCATGTG
TTGTTGAGTCCTCGATAAGTGTTGTCTGATGGATCCAGTCACAACTTT--------------------------------
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>chr7D_1336
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-----------GCATG--------CCGTTGTTGCAGGATTCACCAGGGACCAGCTCAAGGTCCAGGTGAAGCCGTCGGGG
AGCCTCAAGATCAGCGGGGAGCGCGCCCTCAACGGAGGCCGGTAGCGGTGCCACTTCCTGAAGTGGTTCGACCTCCCCGG
CGTCTTCGACGCCGCGGCGATCAAGGTCCAGCTCGACAAGGGGGTCCTCTATGTCCAGGTGCCCCGTTCCACCGACGACA
GCCAAGAGGACGCGCTGCGAGAAGAGAAGGACGCCGGCCTGTTCTGGAGCGGCGGCCACACGGCGGCGTGGCGGGCCGAT
GAGCACCCGGCGTGGCGTCTGGCCAAGAGCCTGGGCGAGCACCGATACGTCGTTCTGAACGTG------------GTGCT
CCTCTGGCTCGTCGCGTTCGCCGACAGCAAGCAGAGCGGTGGCCTGATCAAGAACGAATGAGGCAAGCGACACACATGCA
CGCACAGCG--GGACACTCGTACAGCACAACATATCGATGTAATCATTTAGTACGTCAGAGGATCCGCTTCCATATAAGT
A-------------------------------------------------------------------------------
-------------------------------------------------------------------------------G
CTGATAGAAGGGAATAAGAACCCTGTAAATAGGCAGGATTTGGAACGCGGGATTGTTCAAATCCAAGTCTCAAGATATCA
AGCACTATCGGATATAAAGACGTACTACTA--------------------------------------------------
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------------------------------------------------------CTACCTACTACA--------TACTGG
CTCTGTACC------------------------------AAGTTCTTGCATTGATGATATGAAATGAGTTCAATGTAACC
ACAGAATATATCATTTA---------------------------------------------------------------
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----------------------------------------------------------------------AGCTCCATAA
AACTTGTACGCCAACTTGTGATTAGCTCATGATCTCATGTC---------------------------------------
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-----------------------------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------
-------S---S------------------S-----------------------S---------S-------S-------
---------S---SS-----------------------------------------------------------------
-----------------------------------S---------------------------------S----------
------S-------------------------------------------------------------------------
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---SS---S--S-S---------------------------------------------------S--------------
----------------------------------------S--S-----------------SSSSSSSS--S------S-
--------------------------------------------------------------------------------
-----------S-----------------------------S-----------------------S--------------
----------------------------------------S-------------S---S-----------S---S-----
----------------------------------------------------------------S---SSSSSSSSSSSS
SSSSS------------------------------------------------S-SSSSSSSSSSSSSSSSS---SS---
----------------------------------------S---------------------------------------
---------S---------------S--------S------------------------------------SSS-S----
--------------------------------------------------------------------S-----------
-------------------------------------------------------------------------S------
-------------------S---------------------------------------S------------SS------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
------------------------------------------S-----------------------------S-------
----------------------------------S---S-----------------------------------------
--------------------------------------------------------------------------------
-------------------S--------------------------------------------------S---------
--------------------------------------------------------------------------------
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----------------------------------------------------S-S-------------------------
-----S--------------------------------------------------------------------------
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------------S-------------------------------------------------------------------
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--------------------------------------------S-----------------------S-----------
----------------------------SS--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
S-----------------------------------------S--------S--------------------------S-
------S------S-------------------S-----------S------------S-SS------S-----------
---------------S-----SSS--------------------------------------------------------
-------------------------S----------S-------------------------------------S-----
------------S--------------------------------------S---------------------S--SS--
----------S-S------S---------S--------S--SS---------S------------------S--------
---------S--SSS---------------S-S--------------S-----S-S------------------S-----
-------S------SSSSSSSS----------------------S------------S----SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_3334
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----------------------------------AGACCTGCACACAAGCAAGA--------------------------
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>reverse_7920
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-------------------------------------------------------------------------------G
CTTTTTACCGACGCCAAGG----------
