>input_sequence_69104
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------------------------------------------------------------------ATGGAGAACACAAC
ATCGCCACAATCTTCTTGCATCAGCCAGCCGGCGG---CGGCGGCCATGTCGGCCGGCGAGAGCAGCTGTGCTATGCACT
TTGCAAACTTCGTGGCATCAACAGACAACAAACAGGAGATGGGTCACCAAGGAGGAGAGGCCTCTGACAGTGATTTCTCC
TCTGGCTTCTCTTCCTCATTTGATTCCTTGGGTGATGGCTCCGACACCGACTCCTTCCTCACGTCGGACCTCATGGATGA
AGACGATGAGGATGATTCTCTGCAGGACACTGCCTGTTCTTCCGCCGCTCGCCCTAAGGTTAGTAAAGGAAGAAAAATTA
ACTTTCTCTAGTTAGTCATAGATAGCTTGATGAACAGCAGTACATATTTAGCCTTTATTCTAGGTTCTAACATGATTATG
ATTATTGTTGTACAGGTAACCAGCATGCATGATATGCTCATGAAGTCAATTCTAACCATGGATGCAAAGGACATGAACAC
CGCCCAGCTGGTATGTTCGAGAAGCAATCACTATCATCTCTTTCTAGCTTCCTTCAGAGGTTGTTTAGATATTATAGTAT
AAGCTTTTTCTTACAATTGTGTGTTCCTGAAATACTGCAGGCCAAGTATTTCCTCGATGCGAGCTCAAGGAAGCAGGCGA
CTGGTGCGGTTCCAGAAGTGATCAGCGGTGGAAATAGCAACGAGAAGCAGCTGCATGAGTTCAATGATCTGAGAAAGAAA
GGGCTTTGCTTAGTCCCTCTCTCCATGTTGATAGATTACCTAGGTTGA--------------------------------
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>chr2A_1_TraesCS2A01G474200
GTTTCTAAATATAAGTCTTTTTTAGAGATTCCAGTACGGACTACATACGGAGCAAAATGAGTGAATCTGCACTCGAAAGT
ATGTCTATATATATTCGTATGTAGTCCATATTGAAATATCTAAAAAAAACTTGCATTTAGAAATAGAGGGAGTATTGCTT
TTTGTAGCGTACAATGCATATTCATTCATCATATTGATAATCTAGAAATACACGTGTCCCTTATAAACTGAAAGGGAGGT
AATGTTGAACCACACATTCTTTTTCCTACTCACAAATGAATGTGTATCTTTTCAGAAAACTTTGTAGATTCACAGTGTTC
TCCCACATATACATGTGGGACATTCTTTTAG-AACATGTGCATGCACTTTTGATTTCATTTTTTAGAATATGTA-ACCCC
TTGAGCTCCGGATCCAAAGCAGTTACCACCAGTACAGCAGCTCTATCAACCCATTCAAATAAGAGAAACGTGGCACAAAT
GGAGAGATAGTACTAGTAGAACCAATACTGCAATCTCCAACATATGTTAGTTAAACAAAGCTGCAGTTAGAAAAGAGCAG
AAAACTGGATAGCTATCAGCGTACCACATTGTGATTGGCAAGAGAGGCTTACAGTAGGTGGAGTGTAGCTCTCCATGTAT
CACCAGCCGGCTATGCATCCCAACTGCTTCTGCTGCTGCTGCTGCTTGGGTCCCAATCACCAAAGAATATGCATGATGGC
GATCG----------------------ATTGATCGGTCACAATGATCGATCACGGAATTATTCTCGATCAAGAGACCATT
ACAACGATAAGATTCATCCATTCTCAATTTTTAAAACGGGCGCCAGTGTCTGACAGACAGTTCACGCTCATGTACTTCCA
TTCATATCCACTCGCTGGAGCCGGAGCC-GGAGCTATATATACGGTCAGCACGAGCCGTACCCTGCATTCCATCCAGAAC
ACAACACCCACCTAGAAGCTTTATCACTGCTGCTAGCC-TGCTTCTGCTTGCAGTTTCTCATACACATGGAGAACACAAC
ATCGCCACAATCTTCTTGCATCAGCCAGCCGGCGG---CGGCGGCCATGTCGGCCGGCGAGAGCAGCTGTGCTATGCACT
TTGCAAACTTCGTGGCATCAACAGACAACAAACAGGAGATGGGTCACCAAGGAGGAGAGGCCTCTGACAGTGATTTCTCC
TCTGGCTTCTCTTCCTCATTTGATTCCTTGGGTGATGGCTCCGACACCGACTCCTTCCTCACGTCGGACCTCATGGATGA
AGACGATGAGGATGATTCTCTGCAGGACACTGCCTGTTCTTCCGCCGCTCGCCCTAAGGTTAGTAAAGGAAGAAAAATTA
ACTTTCTCTAGTTAGTCATAGATAGCTTGATGAACAGCAGTACATATTTAGCCTTTATTCTAGGTTCTAACATGATTATG
ATTATTGTTGTACAGGTAACCAGCATGCATGATATGCTCATGAAGTCAATTCTAACCATGGATGCAAAGGACATGAACAC
CGCCCAGCTGGTATGTTCGAGAAGCAATCACTATCATCTCTTTCTAGCTTCCTTCAGAGGTTGTTTAGATATTATAGTAT
AAGCTTTTTCTTACAATTGTGTGTTCCTGAAATACTGCAGGCCAAGTATTTCCTCGATGCGAGCTCAAGGAAGCAGGCGA
CTGGTGCGGTTCCAGAAGTGATCAGCGGTGGAAATAGCAACGAGAAGCAGCTGCATGAGTTCAATGATCTGAGAAAGAAA
GGGCTTTGCTTAGTCCCTCTCTCCATGTTGATAGATTACCTAGGTTGATTACTGTTCATGTACTGTAAGAACGCCGGTTC
AGTTATATATACAATATATATATATATATATATATATATATATATATATATATATATATAGTTCGTACATCACTCTCTTG
TGGACTGTGTCAGCTGAGAACACTACTTCCATCATGCCGTCGAGCTGTCCAATCATGCCATTAACTAATAAAAACAGGCA
TTCAACTATCGAGAAAT---------------------------------------------------------------
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--------------------AATAAACAAGAAGTGAGAAATATTCAAGTGCATGACAGTGAGGAAAACTTTGTATATTGC
TTCGGTACATTGTATGTGTACCGAAACATTTCAAATTTCAAGTTGAGTTAAAACCTCAGTGCGATTCATCAGTGGCATCC
AAGTTGAAAACTTGAATGTAAAACGTATCTTACCTCAGCAGAAAGCTTCGGTCAGATTTTTATGCTGTCAACATTTTGCC
GAAATGAAGACATTTACCTTGAAATTAGT---------------------------------------------------
---------------------------------------------AGAAGATATCAGGTTAGCAATAGCATCAAGTGAAA
TACGGATTATGTAATTCTCAATCTTTCATG-ATATAATGATTAGTGAGCTGGCTCATTCAGTTTGAAATCTGAGTTTGAC
AATCACATGGTCAAAAGATTCCGTTAAGCCTATACGCACACGTCAATGATGTGACCAGTAGGTAGAAGTAGAACTG-ACA
GGCAAGCTGCAATACTCTTCTGACACAAAGGCTAATCTTTCTCTAATCGCTACTCACTAGAAAGTACCAGAGGCCTGCTT
AATTAATCAGAGTAAGCAGAAGGGGTATCTCTGAGTTTCTATAAGTATCAAAACCTACCAAATCAAAACAAGTTCTTTAT
TAGTCTGCTAGGAATAAGTTCAGTCAGTAGTATATTTACATGATACAGCAGTCTTTACGGAGGTTGCAACTAGCAACCCA
TTTCTCTAACAAAGTAAGAAATTTCCATATGCCATCACAAGGAGGCAGTTAGCATCCAGTGGACCTTCAATACTAGACAC
CTATAAGCACATTCCTCGGATTCCTCCAA
>chr2D_1
GTTCCTAAATATAAGCCTG-TTTAGAGATTCCAGTACGGACTACATACGGAGCAAAAAGAGTGAATCTACACTGTAAAGT
ATGTCTATATACATCCGTATGTAGTTCATATTGAAATATCTAAAAAG-ACTTGCATTTTGAACGTAGC-GAGTATTACTT
TTTGTAGCGTACAATGCATATTCATTCATCATATTGATAATCTAGAAATACACGTGTCCCTTATAAACTGACAGGGAGGT
AATGTCAAACCACACATTTTTTTTCCTACTCACAAACGAATGTGTATCTTTTCAGAAAACTTGATAGATTCATAGTGTAC
TCCCACATATACATGTGGGGAATTCTTTTAG-A-CATGTGCATGCACTTTTGATTTTATTTTTTAGAATATGTAGACCAC
TTGAGCTCGGGATCCAAAGCAGTTACCACCAGTACAGCAGCTCCATCAATCCATTCCAAGGGAAAACGTG-GGCACAAAT
GGAGAGATAATACTAGTAGCACCAATACTGCAATCTCCAACATATGTTAGTTAAACAAAGTCGCAGTTAGAAAAGAGCAG
AAAACTGGATAGCTATCAGCCTACCACATTGTGATTGGCAAGAGAGGCTTACAGTAGGTGGAGTGTAGCTCTCCATGTAT
CACCAGCCGGCTATGCATTCCAACTGCTTCTGCTGCC------GCTTGGGTCCCAATCACCAAAGAATATGCATGATGGC
GATCG----------------------A--------------TGATCGATCGCGGAATTATTCTCGATCAAGAGACCATT
ACAACGCTAAGATTCCTCCATTGCCAATTTTTAAAACGGGCGCCAGTGCCTGACAGACAGTTCACGCTCATGTACTTCCA
TTCATATCCACTCGCTGGAGCCGGAGCC-GGAGCTATATATACGGTCAGCACGAGCCGAACACAGCATTCCATCCAGAAC
ACAACACCCGGCTAGAAGCTT-ATCACTGCTGCCAGCC-TGCTTCTGCTTGCAGTTTCTCATACACATGGAGAACACAAC
ATCGCCACAGTCTTCTTGCATCAGCCAGCCGCCACCGCCGGCGTCCATGTCGGTCGGCGAGAGCAGCTGGGCTATGCACT
TTGCAAACTTTGTGGCATCAACAGACAACAGACAGGAGATGGATCACCAAGGAGGAGAAGCCTCTGACAGTGATTTCTCC
TCTGGCTTCTCTTCCTCATCTGATTCCTTGGGTGATGGTTCCGACACCGACTCCTTCCTCACGTCGGACCTCATGGATGA
AGATGACGAGGATGATTCTCTGCAGGACACTGCCTGTTCTTCCGCCGCTCGCCCTAAGGTTAGTAAAGGAAGAAAAAT-A
ACTTTCTCTTGTTAGGCATAGATAACTTGATGAACAGCAGTACATATTTAGCCTTTATTCTAGGTTCTAACATGATTATG
ATTTTTGTTGTACAGGTAACCAACATGCATGATATGTTCATGAAGTCAATTCTAACCATGGATGCGAAGGACATGAACAC
CGCCCAGCTGGTATGTTCAAGAAGCAATCTCTATCATCTCTTTCTAGCTTCCTTCAGACGTTGTTTAGATGTCATAGTAT
AAGCTTTTTCTTACAATTGTGTGTTCCTGAAATATTGCAGGCCAAGTATTTCCTCGATGCGGGTTCAAGGCAGCAGGCGA
CTGGTGCGGTTCCAGAAGCGATCAGCAGTGGAAATAGCAACGAGAAGCAGCTGCATGAGTTCAATGATCTGAGGAAGAAA
GGGCTTTGCTTAGTCCCTCTCTCCATGTTGATAGATTACCTAGGTTGATTACTGTTCATGTACTGTAAGAACGCTGGTTC
AGT--TATATACAATATATATATATATATATATATATATATATAT--ATATATATATATAGTTCGTACATCACTCTCTTG
TGGACTGTGTCAGCTGAGAACACTACTTCCATCATGCCGTCGAGCTGTCCAATCATGCCATTAACTAATAAAAACAGGCA
TTCAACTATCGAGAAAT---------------------------------------------------------------
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--------------------AATAAACAAGAAGTAAGAAATATTCAAGTGCATGACAGTGAGGAAAACTTTGTATATTGC
TTCAGTACATTGTATGTGTACCGAAACATTTCAAATCTCAAGTGGAGGTAAAACCTCAGTGCGATTCATCAGTGGCATCC
AAGTTGAAAACTTGAATGTAAAACGTATCTTACCTCAGCAGAAAGCTTCCGTCAGATTTTTATGCCGTCAACATTTTGCC
GAAATGCAGGCATTTACCTTGAAATTAGT---------------------------------------------------
---------------------------------------------AGAAGATATCAGGTTAGCACTAGCATCAAGTGAAA
TATGGACTATGTAATTCTCAATCTTTCATG-ATATAATGATTAGTGAGCTGGCTCATTCAGTTTGAAATCTGAGTTTGAC
AATCACATGGTCAAAAGATTCCGTTAAGCCTATACGCACACGTCAATGATGTGACCAGTAGGTACAAGTAGAACTGTACA
GGCAAGCTGTAATACTCTTCTGACACAAAGGCTAATCTTTCTTTACTCGCTACTCACTAGAAAGTACCAGAGGCCTGCTT
AATTAATCAGAGTAAGCAGATGGGGTATCTCTGACTTTCTATAAGTATCAAAGCCTACCAAATCAAAACAAGTTCTTTAT
TAGTCTGCTAGGAATAAGTTCAGTCAGTAGTATATTTACATGATACAGTC----TTACGGAGGTTGCAACTAGCAACCCA
TTTCTCTAACAAAGTAAGAAATTTCCATGTGCCATCACAAGGAGGCAGTTAGCATCCAGTGGACCTTCAATATTAGACAC
CTATAAGCACATTCCTCGGATTCCTCCAA
>chr2B_1
GTTTCTAAATATAATTCTG-TTTAGAGATTCCAGTACGGACTACATACGGAGCAAAATAAGTGAACCTACACTATAAAGT
ATATCTATATACACCCGTATGTAGTTCATATTGAAATATCTAAAAGC-ACTTGCATTTAGGAATGGAGGGAGTATTACTT
TTTGTAGTGTACAATGCATATTCATTCATCATATTGACAATCTAGAAATACAAGTGTCCCTTATAAACTGACAGGGAGGT
AATGTCGAACCACACATTTTTTTTCCTACTCACAAACGAATGTGTATCTTTCCAGAAAACTTGATAGATTCATAGTGTAC
TCCCACATATACATGTGGGGAATTCTTTTAGAA-CATGTGCATGCACTTTTGATTTCATTTTTTAAAATATGGAGACCAC
TTGAGCTCGGGATCCAAAGCAGTTACCACCAGTACAGCAGCTCCATCAATCCATTCCAAGGGAAAACGTG-G-CACAAAT
GGAGAGATAATACTAGTAGCACCAATACTGCAATCTCCAACATATGTTAGTTAAACAAAGTCGCAGTTAGAAAAGAGCAG
AAAACTGGATAGCTATCAGCGTACCACATTGTTATTGGCAAGAGAGGCTTACAGTAGGTGGAGTGTAGCTCTCCATGTAT
CACCAGCCGGCTATGCATTCCAACCGCTTCTTCTTCTGCTGCTGCTTGGGTCCCAATCACCAAAGAATATGCATGATGGC
GATCGATCGATCGATCAATCGGTCACAA--------------TGATCGATCGCGGAATAATTCTCGATCAAGAGACCATT
ACAACGATAAGATTCCTCCATTGCCAATTTTTAAACCGGGCGCCAGTGTCTGACAGACAGTTCACGCTCATGTACTTCTA
TTCATATCCACTCGCTGGAGCCGGAGCCTGGAGCTATATATACGGTCAGCACGAGCCGTACCCAGCATTCCATCCAGAAC
ACAACACCCGCCTCGAAGCTT-ATCACTGCTGCTAGCCTTGCTTCTGCTTGCAGTTTCTCATACACATGGAGAAGATAAC
ATCGCCACAATCTTCTTGCATCAGCCAGCCGGCTGCGGTGGCGTCCATGTCGGCCGGCGAGAGCAGCTGGGCGATGCACT
TTGCAAACTTCGTGGCATCAACAGACAACAGACAGGAGATGTATCACCAAGGAGGAGAAGCCTCTGACAGTGATTTCTCC
TCTGGCTTCTCTTCCTCATTTGATTCCTTGGGTGACGGCTCCGACACCGACTCCTTCCTCACGTCGGACCTCATGGATGA
AGACGATGAGGATGATTCTCTGCAGGACACTGCCTGTTCTTCCGCCGCTCGCCCTAAGGTTAGTAAAGGAAGAAAATT-A
ACTTTCTCTAGTTAGTCATAGATAGCTTGATGAACAGCAGTACATATTTAGCCTTTCTTCTAGGTTCTAACATGATTATG
ATTTTTGTTGTACAGGTAACCGGCATGCATGATATGTTCATGAAGTCAATTCTAACCATGGATGCGAAGGACATGAACAC
CACCCAGCTGGTATGTTCGAGAAGCAATCGCTATCATCTCTTTCTAGCTTCCTTCGGACGTTGTTTAGATG-TATAGTAT
AAGCTTTTTCTTACAATTGTGTGTTCCTGAAACATTGCAGGCCAAGTATTTCCTCGACGCACGTTCAAGGCAGCAGGCGA
CTGGTGCGGTTCAAGAAGTGATCAGCGGTGGAAATAGCAACGAGAAGCAGCTGCATGAGTTCAATGATCTGAGGAAGAAA
GGGCTTTGCTTGGTCCCTCTCTCCATGTTGATAGATTACCTAGGTTGATTACTGTTCATGTACTGTAAGAACGCTGGTTC
AGT--TATATACAATATATAT----------------------------ATATATATATAGTTCGTACATCACTCTCTTG
TGGACTGTGTCAGCTGTGAACACTACTTCCATCATGCCGTCGAGCTGTCCAATCATGCCATTAACTAATAAAAACAGGCA
TTCAACTACTCCCTCCGTTCCTAAATAATTGTCTTTCTAGAGATTTCAACAAGTGACTACATACGGAGCAAAATGAGTGA
ATCTACACTCTAAAACATGTCTGCGTACATCCGTATGTTGTAGTCTATTTGAGATGACTAGAAAGACAATTATTTAGGAA
CGGAGGGAGTATCAAGGAACAATAAACAAGAAGTAAGAAATATTCAAGTGCATGACAGTGAGAAAAACTTTGTATATAGC
TTCAGTACATTGTATGTGTACCGAAACATTTTAAATGTCAAGTTGAGATACAATCCCAGTGTGATTCATCAGTGACGTTC
AAGTTGAAAACTTGAATGTAAAACGTATCTTACCTCAGCAGAAAGCTTGGGTCAGATTTTTACGCCGTGAACATTTTGCC
GATATGCAGGCATTTACCTTGAAATTAGTACTCCCTTCGTCCCAAAATAAATATTTTGAGCTTAGTACAAATTTATACTA
GAGCTAGTACAAAGTAGAGACACTTATTTTTGGGACGGAGGGAGTAGAAGATATCAGGTTAGTACTAGCATCAAGTGAAA
TATGTACTATGTAATTCTCAATCTTTCATCAATATAATCATTAATGAGCTGGCTCACTCAGTTTGCCATCTGAGTTTGTA
AGTCACATGATCAAAAGATTCCGTTAAGCCTATATGCACACGTCAATGATGTGACCAGTAGGTAGCTACAAGTAC-----
-----GCTGTAATACTCTTCTGACACAAAGGCTAATCTTTCTTTAATCACTGCTCACTAGAAAGTACCAGACGCCTGCGC
ATTTAATCAGAATAAGCAGAAGGGGTATCTCTGACTTCCTAAAAATATCAGAACTTACCAAATCAAAACAAGTTCTTTAT
TAGTCTGCTATGAATAAGTTCAGTAAGTAGTATATTTACATGATACAGTC----TTACGGAGGTTGCAACTAGCAATCCA
TTTCTCTAACAAAGTAAGAAATTTCCATGTGCCATCACAAGGAGGCAGTTAGCATCCAGTGGACCTTCAATACTAGACAC
CTATAAGCACATTCCTCGGATTCCTCCAA
>SNPs
------------------SS------------------------------------------------S----SS-----
-----------S--S----------S--------------------SS----------------S-----------S---
-----------------------------------------------------------------------S--------
-----S------------S-----------------S-------------------------SS--------S-----S-
-------------------SS------------S--------------------------------------------S-
--------S----------------------------------S-----S------S--SSSS-S-SSS-S---------
---------S---------S----------------------------------------SS------------------
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------------------S-------------------------------------------------------------
----------------------------SSSSSSSSSSSSSS---------S----------------------------
---------------S------SS--------------------------------------------------------
---------------------------------------------------------------S----------------
---------S-----------S----------------------------------------------------------
---------------------------------S---------S-------------------------S----------
------------------------------S-----------S---------------S---------------------
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------------------------------------------------------------------------------S-
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---S--------------------------------S----------------------------S--------------
-----------------------------S----------------------------S-----------S---------
----------------------------------S--------------------------S-S------S---------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------S-----
---SS----------------------------------------SS---------------------------------
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----------------------------------S---------------------------------------------
---S--------------------------------S----------S--------------------------------
-----------------------------------------------------------------S--------------
------S--S----------------------------------------------------------------------
----------------------------------------------------------------S---------------
--S---S-------------------------------------------------------------------------
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---------S--------------------------------S-------------------------------------
----------------------------------S---------------------------------------------
------------------------------------------------SSSSSS--------------------------
----------------------------S---------------------------------------------------
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>forward_444
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------------------------ACCACCAGTACAGCAGCTCT------------------------------------
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>reverse_1506
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-----------------------------------------------------------------AAAGGACATGAACAC
CGCCC---------------------------------------------------------------------------
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>forward_1179
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---------------------------------------TGGGTCACCAAGGAGGAGAG---------------------
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>reverse_2930
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-------------------------------------------------AGTCTTTACGGAGGTTGCAACT---------
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