>input_sequence_69056
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--------------------------------ATGGAGAGCGACTGCCAGTTCCTGCTGGCGCCGCCGCCGCGCATGTAC
GCCGCGCCGGGGGACGACGGCCAGTTCCTTCAGCAGCAGCAGCAGCAGCTGAGCGGCGGCGGCGCCGGGGAGAGGAAGCG
GCGGTTCACGGAGGAGCAGGTGCGGTCGCTGGAGAGCACGTTCCACACGCGGCGCGCCAAGCTGGACCCCCGGGAGAAGG
CGGAGCTGGCGCGCGAGCTGGGGCTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCCCGGTGGCGCTCC
AAGCAGCTGGAGCAGGACTTCGCGGAGCTGCGCGGCCATTACGACGCCCTCCGCGCCCGCGTCGAGTCGCTCAAGCAGGA
AAAGCTCACTCTCGCCGCGCAGGT----AACCAACACACGCACGCCATATATATACTCCATCCTCCATGGTCGGTCGTCG
ATCATTA--------CAGATACG---------TGCATGCTAATGGT---GTCTGCTCGATGTGCAGCTGGAAGAGCTGAA
GAAGAAGCTGGACGAGCGGCAAGACCAGAGCGCTAGCTGCGGCGGCTCTTGCGCCGTCGCCGACGTAGACGACAAGAGGG
ATAACGTTAGCAGCTGCGTCGC---GGCGAAGGATGAGAGCGCGGCGCCGGCGGCAGACGTGTCGGACGGCTCAACTCCG
GGCTGGTACGAGTATGACGACCACCTGGTGTATGGGGTTGACCTGCACGAGCCGTTCTGCGCCACTCAGGAGCTGTGGGA
GACGTCATGGCCGCTGGTGGAGTGGAACGCAGTGGCATGA----------------------------------------
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>chr6B_1_TraesCS6B01G284300
ACTTACCGAAACTTGACAACGGGGTTGGATCGACAAAAAAGAAACGTCAGCTAGGTTTTCATTTATAAATAC---GTCAG
TGTTCTTTAGCAAACGAAGAACTTGACATGAGCAGCGGT--------------CGACTCATTCGCCAGCTTGCTCTTTGT
ACT-----------------------------------------------------------------CTATCTAAGCAG
ATTGACAGTCCACCTGATCGACTGGAGACGGATAAACAGTCCACCTGATCGACTGGAGGCAGT------ACAACAACACA
CGA-TTTTTGTCTAGCACAACGCACATGTATCAGTCGGCGGCCCCGCTATCTATCTTGGTCGACGCGGAGCAGCTGGAGG
GACACGTA------CGTAACGCCAATCGAACTGGAGATAAGCTCTTCTA-TCTAGCTTTA---ACGATCCAAGGACGAAG
AGAAGATATCCATGGAAT-----TCTCCTCTCCTCTCTTCTTGCCGAGCCGTCAGTGCGTC----GCCTGCACATCGACA
CCCTACCCAGACCTAGGGAGCCTAGCCAGCGAGAAAACGGGGAGCCTCCCCT------------GCCACCTCGGCATCTC
TTTCCGGAGAAGCCGTGCCACCCCTGGGCCGATTGACATGGACGCTGTCGACCTAGCAGCTACAGCGATCGGCCTCCCGA
--GAACCGTGGCATCGTCGAACATTTCCTTCTTGAACAAAGCGTGCAGAACAAAGTTGCAAAAAATAAGAGAGAGGATAA
CCATTC-------------CGTGCACACCACGTGTCCGGCCCGCGCGAGGCCCAAGTGGCCAAGTCGATCTCGAGACGGA
TAACCATTCCGTTCATATGCCCGCGGGCCACCGGCCCGATGCGCGACACCTGTACGGCGCGATACAGCGACGGCGGGCCT
GCGCGCGGGTTTCGATCGGCGCCACGCGTGCGCGTGCGTCGCG-----CCGTTCTGGACCCGTATAAAACCGG-CCGGCG
CACCACGTTCCAAA--CGCCACCGATGCACGCGCTACTAGCC---------AGCTTGGTTCAGTGGAGTTCTGTCTCTGA
CGATTCGATTTCGGTACCGCGACGGCTCCGAAATGGAGAGCGACTGCCAGTTCCTGCTGGCGCCGCCGCCGCGCATGTAC
GCCGCGCCGGGGGACGACGGCCAGTTCCTTCAGCAGCAGCAGCAGCAGCTGAGCGGCGGCGGCGCCGGGGAGAGGAAGCG
GCGGTTCACGGAGGAGCAGGTGCGGTCGCTGGAGAGCACGTTCCACACGCGGCGCGCCAAGCTGGACCCCCGGGAGAAGG
CGGAGCTGGCGCGCGAGCTGGGGCTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCCCGGTGGCGCTCC
AAGCAGCTGGAGCAGGACTTCGCGGAGCTGCGCGGCCATTACGACGCCCTCCGCGCCCGCGTCGAGTCGCTCAAGCAGGA
AAAGCTCACTCTCGCCGCGCAGGT----AACCAACACACGCACGCCATATATATACTCCATCCTCCATGGTCGGTCGTCG
ATCATTA--------CAGATACG---------TGCATGCTAATGGT---GTCTGCTCGATGTGCAGCTGGAAGAGCTGAA
GAAGAAGCTGGACGAGCGGCAAGACCAGAGCGCTAGCTGCGGCGGCTCTTGCGCCGTCGCCGACGTAGACGACAAGAGGG
ATAACGTTAGCAGCTGCGTCGC---GGCGAAGGATGAGAGCGCGGCGCCGGCGGCAGACGTGTCGGACGGCTCAACTCCG
GGCTGGTACGAGTATGACGACCACCTGGTGTATGGGGTTGACCTGCACGAGCCGTTCTGCGCCACTCAGGAGCTGTGGGA
GACGTCATGGCCGCTGGTGGAGTGGAACGCAGTGGCATGAACCAACGTTGCATATACACGTACTACGGTACATCTGTGTA
CGCGTTCCTATACGTCGATGCTGTTGCTGTTGCTGTCTTGTCTAGCTGGTTGATCCGGACCATGTAGATCATCAGGTCGA
TCGGACCGTCATGTAGAATCGTAGAACAGATAGGTA----GGATCCCACATGCAAGCAGCCACGAAATCTACATGCGAGA
AATCTTCCCGCCGGCCGGCCGG----CGATCTGCTTCGTCGACTCCGGGATTCATGAGATCATGTCCGTGAAAA-TGGCT
TTAGAATCACGCGCAGCGTCTCGATCCGGCGGCTGTCACTCATGTGGTTCCTGTCGCGCCGTCGCCGACGAAAGAAAAAA
CCACA---GTTACCTGTAGAGAACGTGTTTCACCAGTTGCCCATGTCGCTCTAGAAATCCATACATTCGTTCCTGTGTTC
TCCTCTGACGCGGGTGCTATTTTACTGTGGCCTGCGGGCGATGGATTGATCCAGAACGCGCGTGCGCCGGAGACGACGAG
AGGAGTGTCGCTGTCGCTGTCGCGGCACCACAGGGGGGGTGATTCGTATCGTCTGTTGCTGCTTTGGACGCCACCCGGCG
TGTCGAGCGTTCGTTCGTCCAGCACTGTCGCGCGCGGGGGCCAAAGACGAGAAAGAGGCAGCGGGAAAATGACGCGGGAG
GCGCGGCTGTCGCCGGGGGAGAGGACGGTTCGGCGAGAAAAGGAAGTTGTGGATGCGACTCATGCGTGGCCCGGCGGCCG
AATGGGTGGCGGAAACGACTCACTCACCTGGAAAACGACCGCCCGCCGCATCAAATGAGAAGCGCGCAGATGTTCTAATT
GATTAAAGATTAATTTTCTTGCTAAAAAAAGATTGGGGTTT--TTTACTCCTAGGTGTGGCTACACCCCTCGTGGACAGT
AAATTTGACGAAAAACAAAAAATATGGAATGTTGTGACATCAATCAAATATACTCAAAACGTTTTATGTGATTTGAGGAG
GTTTACACCCAAAA
>chr6D_1
ACTTACCGGAACTTGACAACGGGGTTGGATCGACAAAAA-GAAACGTCAGCTGGGTTTTCATTTATAAACACAGTGTCAA
TGTTCTTGAGCAAATGAATACCTT-ACGTGAGCAGCGGTCATTGCGTCCGGGGCGACTCATTCGCCAGCTTGCTCTTTGT
ATAGTAAGTACTCCCTCCGTAAACTAATATAAAATTATTTAGATCATTATTTATATAGAGAATACTTACTATATAAGCAG
ATTAATAGTCCAACTGTCGGACTGGAGACTCTAGTGTCAAGCAAAATCTATCGACAGATAAAACAGGTGACGACAACACA
CGA-TTTTTGTGTAGCACAACGCACATGCATCGGTCGGTGGCCCCGCTATCCATCTTGGTCGACGCAGAGCAGCTGGAGG
GACACGTAACGCAACGTAACGTCGATCGAACTGGAGATAAGCTCTTCTAG-CTAGCTTTA---ACGATCCAAGGACGAAG
AGAAGCTATCCATGGAAT-----TCTCCTCTCCTCTCTTCT-GCCGAGCCGTCATCTCGTCGCCGGCCTCCACAGCGACA
CCCTACCCAGACCTAGGGAGCCTAGCCAGCGAGAAAACGGGGAGCCTCCCCT------------GCCACCTCGGCATCTC
TTTCGGGAGAAGCCGTGCGACCCCTGGGCCGATTGACATGGGCGCTGTCGACCTAGC---TACAGCGACTGGCCTCCCGA
--GAACCGTGGCATCGTCGAACATTTCCTTCTTGAACAAAGTGTGCAGAACAAAGTTGCAAAAAAAGAGAGAGAGAGAGG
ATCTCGCACTCCAGCGATGCGCGCACACCACGTGTCCGGCCGGCGCGAGGCCCAAGT--------CGATCTGGAGACGGA
TAACCATTCCGTGCATATGCCCGCGGGCCACCGGCCCGATGCGCGACACCTGTACGGCCCGATACAGCGACGACGGGCC-
---CGCGGGTTTCGATCGGCGCCACGTGTGCGCGTGCGTCGCGCAGTTCCGTTCTGGACCCGTATAAAACCGGGCCGGTG
CACCACGTTCCAAACGCGCCACAGATGCACGCGCTACTAGCC---------AGCTTGGTTCACTGGAGTTCTGTCTCTGA
CGATTCGATTCCAATACCGCGACGGCTCCGAAATGGAGAGCGACTGCCAGTTCCTGCTGGCGCCGCCGCCGCGCATGTAC
GCCGCGGCGGGGGACGACGGCCAGTTCCTTCAGCAGCATCAGC------TGAACGGCGGCGGCGCCGGGGAGAGGAAGCG
GCGGTTCACGGAGGAGCAGGTGCGGTCGCTGGAGAGCACGTTCCACACGCGGCGCGCCAAGCTGGAGCCCCGGGAGAAGG
CGGAGCTGGCGCGCCAGCTGGGGCTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCCCGGTGGCGCTCC
AAGCAGCTGGAGCAGGACTTCGCCGAGCTGCGCGGCCATTACGACGCCCTCCGCGCTCGCGTCGAGTCGCTCAAGCAGGA
AAAGCTCACTCTCGCCGCGCAGGTAATTAACCAGCACATGCATGCCATATC----CTCCATGCTCCATGGCCGGTCGTCG
ATCATTAGTTCATTACAGATACGTGAGTCGCGTGCATGCTAATGGTGTCGTCTGCTCGATGTGCAGCTGGAAGAGCTGAA
GAAGAAGCTGAACGAGCGGCAGGACCAGAGCGCCAGCTGCGGCGGCTCTTGCGCCGTCGCCGACGTGGACGACAAGAGAA
ACAACGTTAGCAGCTGCGTCATGAAGGCGAAGGATGAGAGCGTGGCGCCGGCGACAGACGTCTCGGACGGCTCAACTCCG
GGCTGGTACGAGTATGACGACCACCTGGCGTACGGGGTTGACCTGCACGAGCCGTTCTGCGCCACTCCGGAGCTGTGGGA
GACGTCATGGCCGCTGGTGGAGTGGAACGCAGTGGCATGAACCAACGTTGCATACAC-----------TACATCTGTG--
----------TACGTCGATGCTGTTGCTAG------CTTGTCTAGCTGGTTGATCCGGACTATGTAGATCA---GGTCGA
TCGGGCCGTCAGGTAGAATCGTAGAACAGATAGGTAGTAGGGATCCCACATGCAAGCAGCCATGAAATCTG-ATGCGAGA
AATCCTCCCGCCGACCGGCCGA----CGATCTGCTCCGTCGACTCTGGGATTCATG--------TCCGTGAAAA-TGGCT
TAAGAGTCACGCGAACCGTGTCT----GGCGGCTGTCACTCATGTGATTCCTGTGGCGTCGTCGCCGACGAAAGAG--AA
CCACT---GTTACCTATAGAGAACGTGTTTCACCAGCTGCCCATGTCGCTCTAGAAATCCATACATCCGTTCCTGTGTTC
TCCTCTCGCGCGCGTGTTTATTTACTGT-GCCTGTGGGCGACCGATCGATCCAGAACGCGCGTGCACCGGAGACGACGAG
AGGGGAGGAGC-GTCGCTGTCGCGGCAACACAGGGGGGATGATTCGTATCGTCTGTTGCTGCTTTGGACGCCACCCGGCG
TGTCGACCGTTGGTTCGTCCGGCACTGTCGCGCGCGGGGGCCAAAGACGAGAAAGAGGCAGCGGGAAAACGACGCGGGAG
GCGCGGCTGTCGCCGGAGGAGAGGACGGTTCGGCGAGAAAAGGAAGTTGTGG---------ATGCGTGGCCCGGCGGCTC
AATGGGTGGTGGAAACGACTCACTCACCTGGAAAGCGACCGCCCGCCACATCAAATAAGAAGCGCGCAGATG--------
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>chr6A_221
TACAAA--------------------------------------------------------------------------
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-------------------------------------------------------------------------CAACACA
CGATTTTTTGTCTAGCACAACGCACATG-----------------------TATCTTGGTCGACGCGGAGCAGCTGGAGG
GACACGTGACGC-----AACGCCAATCGAACTGGAGATAAGCTCTTTTAATCTAGCTTTAACGACGATCCAAAGACGAAG
AGAAGATGTCCATGGAATTCTCCTCTCCTCTCCTCTCTTCT-GCCGAGCCGTCATCTCGTCGCCGGCCTCCACAGCGACA
CCCTACCCAGACCTAGGGCGCCCAGCCAGCGAGAAAACGGGGAGCCCCCCAGGCAACGTGACAAGCCACCTCGGCATCTC
TTCCGGGAGAAGCCGTGC-----------CGATCGACATGGACGCTGTCGACCTAGC---TACAGCGATTGGCCTCCCCG
CGGAACCGTGGCATCGT---------------TGAACAAAGTGTGCAGAAC-------------------GAGAGAGAGG
ATCTCGCACTACAGCCATGCCCGCGCACCACGTGTCCGGCCCGCGCCAGGCCCAAGT--------CGATCTCGAGACGGA
TAACCATTCCGTGCATATGCCCGCGGGCCACCGGCCCGGTGCGCGACACCTGTACGGCGCGATACAGCGACGGCGGGCC-
---CGCGGGTTTCGATCGGCGCCACGTGTGCGCGTGCGTCGCGCCGCTCCGTTCTGGACCCGTATAAAACCGGACCGGCG
CGCCACGTTCCAAA--CGCCACAGATGCACGCCTGGTGCACGCGCTACCAAAGCTTGGTTCAGTGGAGTTCTCGCTCTGA
CGATTTG------ATACCGCGACGGCTCCGAAATGGAGAGCGACCGCCAGTTCCTGCTGGCGCCGCCGCCGCCCATGCAC
GCCGCGGCGGGGGACGACGGCCACTTCCTTCAGCAGCAGCAGC------TGAGCGGCGGCGGCGGCGGCGAGAGGAAGCG
GCGGTTCACGGAGGAGCAGGTGCGGTCGCTGGAGAGCACGTTCCACACGCGGCGCGCCAAGCTGGAGCCCCGGGAGAAGG
CGGAGCTGGCGCGTGAGCTGGGGCTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCCCGGTGGCGCTCC
AAGCAGCTGGAGCAGGACTTCGCGGAGCTGCGCGGCCATTACGACGCCCTCCGCGCCCGCGTCGAGTCGCTCAAGCAGGA
AAAGCTCACTCTCGCCGCGCAGG----TAACCAGCACACGCATGCCATATC----CTCCATCCTCCATGGTCGGTCGTCG
ATCATTA--------CAGATACGCGAGTCGCATGCATGCTAATGGCGTCGTCTGCTCGATGTGCAGCTGGAAGAGCTGAA
GAAGAAGCTGAACGAGCGGCAGGACCAGAGCGCAAGCTGCGACGCCGC---------CGCCGAGGTGGACGACAAGAGCA
ACAACGTTAGCAGCTGCATCGT---GGCGAAGGATGAGAGCGCGGCGCCGGCGGCAGACGTCTCGGACGGCTCAACTCCG
GGCTGGTACGAGTATGACAACCACCTGGCGTATGGGGTTGACCTGCAGGAGCCGTTCTGCGCCACTCCGGAGCTGTGGGA
GACGTCATGGCCGCTGGTGGAGTGGAACGCAGTGGCATGAACCAACGCTGCATATGCA----------TACATCTGTG--
----------TACGTCGATGTTGTTGCTGG------CTGGTCTAGCTGGTTGATCCGGACTATGTAGATCA---GGTCGA
TCGGGCCGTCAGGTAGAATCGTAGAACAGATAGGTAG---GGATCCCACGTGCAAGCAGCCATGAAATCTACATGCGAGA
AATCTTCCCGCCGGCCGGCCGGCCGGCGATCTGCTCCGTCGACTCTGGGATTCATG--------TCCGTGAAAAATGGCT
TAAGAATCACGCGCAGCGTGTCT----GGCGACTGTAACTCGTGTGGTTCCTGTCGCGCCGTCGCCGACGAAAAATATAC
ACCCACTGGTTACCCATAGAGAACGTCTTTCACCAGTTGCTGTGT-----------------------------------
---TCTCGCGCGCGTGCTA--TTACTGTGGCCTGTAGGCGATGGATCGATCCAGAAGGCGCGTGCGCCGGAGACGACGAG
AGGAGAGGAGC-GTCGCTGTCGCGGCAGCACAGGGGGGATGATTCGTATCGTCTGTTGCTGCTTTGGACTCCACCCGGCG
TGTCGACCGTTGGTTCGTCCGGCACTGTCGCGCGCGGGGGCCAAAGACGAGAAAGAAGCAGCGGGAAAACAACGCGGGAG
GCGCGGCTGTCGCCGGGGGAGAGGACGGTTCGGCGAGAAAAAGAAGTTGTGG---------ATGCGTGGCCCGGCGGCCG
AATGGGTAGTGGAAACGACTCACTCACCTAGAAAGCGACCGCCCGCCACATCAAGTGAGGAGCGCGCAGATGTTCTAATT
ATT----------TTTTCTTACTAAAAAAAGATTGGTTATTTCTTTACTCCTGGGTGTAACCACACACCTCGTGGACAGT
AAATTTGAA-------AAAAAAAATGGAATTTTGTGACATCAATATACTC------AAACGTTTTAAGCGATTTGAGGAG
GTTTACACACAAAA
>SNPs
--------S------------------------------S------------S----------------S---------S
-------S------S---S-S---S--S----------------------------------------------------
-SS---------------------------------------------------------------------S-------
---S-S------S---SSS----------SSSSSSSSSSSS--SSSSS-SSSSSSSSSSS-SS--------S--------
----------------------------S---S-----S-----------------------------------------
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-----------------------------------------S------------SSS------------S----S-----
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----S-------------S--------------------------------------SSS---------S----------
-----------------------------------------S-----------------------SS--------SSSSS
SSS-SS---------------S-----------------------------------SSSSSSSS---------------
------------S------------------------------------------------------------------S
SSS-----------------------S-----------------------------------------------------
----------------------S---------------------------------------------------------
----------S-SS------------------------------------------------------------------
------S------------------------------------SSSSSS-------------------------------
------------------------------------------------------------------S-------------
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---------------------------------S--------S-------SSSSS-------------------------
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----------S----------S-----------S--------------------------------S-----------SS
-S-------------------S---------------------------------------S------------------
----------------------------S--------------------------------------S------------
----------------------------------------------------------SSSSSSSSSS----------SS
SSSSSSSSSS-------------------SSSSSSS------------------------S----------SSS------
----S------S--------------------------------------------------S-----------------
-----------------------------------S---------S----------SSSSSSSS----------------
-S-----------------S--SSSSS------------------------------------------------S-S--
---------------S--------------------------------------------------S-------------
------SS----S------S--------------S-----------S---------------------------------
-----S-SS--S---------------S----------S-----------------------------------------
------S----S--------S------------------------------------------------S----------
----------------------------------------------------SSSSSSSSS-------------------
---------S------------------------S------------S--------------------------------
SS-SSSSSSSSSS-------S---------------SSS-------------S-----SS-S----S-------------
--------SSSSSSSS------S-------S-------------SS-S-SSSSSSS----------S-S-----------
--------S-----
>forward_297
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-------------------------------------AGTCCACCTGATCGACTGGA-----------------------
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>reverse_1869
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----------------------------TGTATGGGGTTGACCTGCAC--------------------------------
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>forward_1563
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-----------------------CAGGTAACCAACACACGCAC-------------------------------------
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>reverse_2730
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---------CGGAAACGACTCACTCACCT---------------------------------------------------
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