>input_sequence_69052
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------------------------------------------GTAGAGACCAGACATCCAGAAGAGCGAGGACATGTGTC
CCCGGAGCAACTCGGCCTTCGTGCCGCCGGTGCCGAAGCCGCAGCAGAAGAAGTGGCGGCAGGAAGAGGAGTCAGGAGGC
GGTCGCAGGGGATCCCGGGCCTCCCGGCGTGCGTTGACGAAGAGCGAGGATGTGCGGAGGTACAGCGCGGTGGAGCGTCG
TGAGCGCATCGAGAGATACCGGAGCAAGCGCAAGCGCCGCAACTTCCAAAAGAAGATCACCGTACGTATTTGCTTTCCGA
TCACCTGGTTGATTTGCATTCATTCGTTCACTCAGCCATGCATTTCTTTCTGTATTACTACTACTTTGCAGTACGCTTGC
CGGAAGGCGCTCGCGGATAGACGGCGAAGGATCCAGGGGCGCTTCGCACAAGCCGGAGAGGAAGATCAAAAGGCGTGCCT
TGCAGAAACGACAGACCAAGGTTCAAGCAGCAGTAGCGGAAGTGCGGTGCCGGAGTGGTGGCCAGCAATGGAGGAGGCGC
TGGCCAGGAAGGAGGAGGTGGATGGCATCACTAAGCTCCTCCGCTGGGACCATGAGATGCTCGTCTCATACCTCGGCCTG
AACCTCTCCTGTGCTAGTGACCCTTCCAATCATCCATCCACCTGAGCAATGTAGTGCAATCAAACGCCGTCTATCCAAGG
TCACAAGATTGAATTCCGAAGTTAAAGAGAAAAAAAGGAGTCATATGTTGAGTTTTTCATTTTTCTACTATTTCCATTTC
TGAAATGAACTTTTGATCCATCT---------------------------------------------------------
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>chr5A_1_TraesCS5A01G157400
TCTTCTCTTCCCACCACCATTCTCCCATGCCGCTCCTCTCACCGCTCATCTCCTCTCATCGGCCCGACGGCCTAGCTTGG
ACCAAATGTGTTGTTTCTAGTTTCTCCTGTTAACCATTGGATTGATGCTCTATCAAAAATATGGAAAGGGAAATATCTAA
GGGAGTGGCTACAAAACGGCCGCCTGAAATTTAAAGTTATCAGTCGATTTCTAGCTTTCAGTCTCAACCATTGGATCAAG
ATCCAACATCCAGGGCATCATTTTCCACCTCAGCTCTCTTCTTCCTCACCCAATCTTTCCCACAGCAGCCACCACGTACG
GACCACCGGCCGGACCGCCAGCCGCCACCACCCGTGGCCGGAGGCGCTCCCGAACAGCCTCGCCCTCCCCGAAACCTCCT
CCCACCGGCACACTGCCGTCGCCCCCGACCATCCCTCTAGCCCCGGGCCTTGCCGGTTTATTTTCCTCCGGTGAACCTTC
ACAACTGCCGTGCTGCCTCCCCCACCACAGCCGTGCTGCCTCCCACCCCCACCCTAAGATATATGATGGGGTTCCTCCCC
TCCAGTTGTTTC-CCCTTCAACCAAAATTGACTGACCCAAATTCCAAAGTCAGGCGGCTGACATGTAGGTATTATGAATG
ACGAACCACGTAGGTGGGTACACGCATGGGATTATGCATGTAGAGCGTGCAACATGCAACACATTTTTCATACGGGCAGT
GCAGTCGTATTATAAATGACAAGTAGTTAAACGCATGACATGAATTACAGCTCAGAACACAGCTAGCACATAAATAGAGC
ATGCAACGTAATTTGTATCCATGTGTCTAAGTAGACACAGTGTCACAACTGTCATACCAAATGAGACACTCTGTACCATG
CATGTCATTGCGTACATAGTCCGTCGGATACACATGTATCGGTGTGAGCTCTTGCAACCTGTTTCCATATATTTGTAGCA
GCCTAGCAA-TGTGTATATAAACTGACAAACACCTTAGTTTTGTAGAGACCAGACATCCAGAAGAGCGAGGACATGTGTC
CCCGGAGCAACTCGGCCTTCGTGCCGCCGGTGCCGAAGCCGCAGCAGAAGAAGTGGCGGCAGGAAGAGGAGTCAGGAGGC
GGTCGCAGGGGATCCCGGGCCTCCCGGCGTGCGTTGACGAAGAGCGAGGATGTGCGGAGGTACAGCGCGGTGGAGCGTCG
TGAGCGCATCGAGAGATACCGGAGCAAGCGCAAGCGCCGCAACTTCCAAAAGAAGATCACCGTACGTATTTGCTTTCCGA
TCACCTGGTTGATTTGCATTCATTCGTTCACTCAGCCATGCATTTCTTTCTGTATTACTACTACTTTGCAGTACGCTTGC
CGGAAGGCGCTCGCGGATAGACGGCGAAGGATCCAGGGGCGCTTCGCACAAGCCGGAGAGGAAGATCAAAAGGCGTGCCT
TGCAGAAACGACAGACCAAGGTTCAAGCAGCAGTAGCGGAAGTGCGGTGCCGGAGTGGTGGCCAGCAATGGAGGAGGCGC
TGGCCAGGAAGGAGGAGGTGGATGGCATCACTAAGCTCCTCCGCTGGGACCATGAGATGCTCGTCTCATACCTCGGCCTG
AACCTCTCCTGTGCTAGTGACCCTTCCAATCATCCATCCACCTGAGCAATGTAGTGCAATCAAACGCCGTCTATCCAAGG
TCACAAGATTGAATTCCGAAGTTAAAGAGAAAAAAAGGAGTCATATGTTGAGTTTTTCATTTTTCTACTATTTCCATTTC
TGAAATGAACTTTTGATCCATCTATGAAAGCTGTTTA--TTTTTCCTTTTTTGAGATCCTATGGAAGCTGTAGGAATTGG
AAATTCTGGCCAACTCACGGGCCAAATCGAACTTGGGCTATGCATCTCAAATTCTTGTATCTTTGCGG--------TGCA
TAATTTGCTTAAAGAGAGAATATTATTAATGCTTACTGGATGTGGTCCGGCACAGCACGTTTGGTCCACGCGTTGTCACG
ATGGAGTAGACTGGAGTGAATGCCAACACTCAACTTCGACCTCATCGGGTAGTTGTCCTCTTTGTGTAGTGACCTACAGT
CCGGTAGGGATCTCCGGTCCGGCGTAACCCTAGTCTTCCAGTGTTTATGGAAGCACCACAATAACATGGTCTTTCATGAG
GTGATAGCCTCTCCCCAACTGATGTTGCACCACATT-AAGAGAACTTTTTTACATGGGTCTC--TCCAAAGTTGATCTAC
AACACGGCCTTTGACTGCGTGGGCTTGGTGCCGTGTGTGGCATTGCATAG----TCACTTGGTACCTTGCCATATGTTCC
GATAAGCCTCCCATCAATTATCCATGAAAAACTATAAATACCTGTTTGGTATACAATTATAACAACATACCTATGGGGAG
AAGGGATTTATTCAGACAGAAAACAGAAAACCACCCAACCGCTCCCGCGTCGCTCCG-ACGGCAACGGGAGGGAACCCTA
GCACGCCGCTGCCA----CCCCAAGCTCCTCCATCCCTCTTATTTGTCGCCGCTGGCATGCTCGGTCTGGCAAAGCTTGG
TTGGTGCCGGCAGCCATGGGCCAGCTTCATCTCCTCGCATGTTGGGGCTGACGCGGGGCAGCTGCTACGAGCCAGGGCGT
GGCGCGGACAACTAGAACCACGACGCGACATCCTGTAGGTGCGTTTGCGGTGTGATGGTTAACACAGAG-----------
----GGTGGTGGCCTTGGCGGCTATCCAGGCTTCGCCCAGATCTGGCGTGCAGTGGCTACTGGGGGTGAGGACTGGGGAT
GCATGAGCCGGAGGCTGCTG
>chr5D_1
TCTTCTCTTCCCACCACCTTTCTCCCATGCCGCTCCTCTCGCCGCTCATCTCGTCTCATCGA-CCGACGACCTAGCTTGG
ACCGAATGTGTTGTTTCTAGTTTCTCCTGTTAACCATTGGATTGATGCTCTATAAAAAATATGGAAAGGTAAATAACTAA
GGGAGTAGCTACAAAACAGTCACCTGAAATTTAAAGTTATCAGTCGATTTCTGGCTTTCAATCTCAACCGTTTGATCAAG
ATCCAACATCC-GGGCATCATTTTCAACCTCGGCTCTCTTCTTCCTCACCTGATCTCCCCCCCAGCCGCCACC----ACG
GACCACCGGCCGGACCACCAGCCACCACCACCCGCGGCCGGAGGCGCTCCTCCACAGCCTTGCTCTCCCCGGAACCTCCT
CCCACTGCCGCGCCGCCGCCGCCCCCGACCATCCCTCTAGCCCCGGGCCTTGCCGGTTTTTTTCTCTTCGGTGAACCTTC
ACAACTGCCGTGCTGCCTCCCCCACC---------------------CCCACCCTAAGATAGATGATGGGGTTCCTCCCC
TCCGGTTGTTTCTCCCTTCAACCAAAATCGACTGACCCAAATTCGAAAGTCAGGCGACTGACATGTAGCTATTGTGATTA
ACTAACCACGTAGGTGGGTACACGCATGGGATTATGCATGTAGAACGTGCAACATGCAACACATTTTTCATACGGGCAGT
GCAGTCCTATTATAAATGACAAGTAGTTACACGCATGACATGAATTACAGCTCAGAACACAGCTAGCACATAAATAGAGC
ATGCAACGTAATTTGTATCCATGTGTCTAAGTAGACACACTGTCACAACTGTCATACCAAATGAGACACTCTGTACCATG
CATGTCAGTGCGTACATAGTCCGTCGGATACACATGTATCCGTCTGAGCTCTTGCAACCTGTTTCCATATATTTGTAGCT
AGCTTAGCCGTGTGTATATAAATTGACAAACACCGTAGTTTTGTAGAGACCAGTCATCCAGAAGAGCGAGGGCATGTGTC
CCCGGAGCAACTCGGCCTTGGTGCCGCCGGTGCCGAAGCCGCAGCAGAAGAAGTGGCGGCAGGAAGAGGAGTCAGGAGGC
GGTTGCAGGGGATCTCGGGCCTCCCGGCGTGCGTTGACGAAGAGCGAGGAGGTGCGGAGGTACAGCGCGGTGGAGCGTCG
TGAGCGCATCGAGAGATACCGGAGCAAGCGCAAGCGCCGCAACTTCCAAAAGAAGATCACCGTATGTATTTGCTTTCCGA
TCTCCTGGTTGATTTGCATTCATTCGTTCACTCAGCCATGCATTTCTTTCTGTATTACTACTACTTTGCAGTACGCTTGC
CGGAAGGCGCTCGCGGATAGACGGCGGAGGATCAAGGGGCGGTTCGCACACGCCGGAGAGGAAGAACAAAAGGCGTGCCT
TGCAGAAACGACAGACCAAGGTTCAAGCAGCATTAGCGGAAGTGCGGTGCCGGAGTGGTGGCCAGCAATGGAGGAGGCGC
TGGCCAGGAAGGAGGAAGTGGATGGCATCACT---------CGCTGGGACCATGAGATGCTCGTCTCATTCCTCGGCCTA
AACCTCTGCTGCGCTAGTGACCCTTCCAACCATCCATCCACCTGAACAATGTAATGCAATCAAACGCCGTCTATCCAAGG
TCACAAGATTGAGTTCCGAAGTTAAAGAAAAAAAAAGGAGTCGTATCTTGAGTTCTTCATTTTTCC---ATTTCCATTTT
TGAAATGAACTTTTGATCCATCTATGGAAGCTGTAATT-TTTTTCCTTTTTGGAGATCCTATGGAAGCTGTAGGAATTGG
AACTTCTGGCCAACTCATGGGCCAAATCAAACTTGGGCTATGCATCTCAAATTGTTGTATCTTTGCGGATTAAGAATGTT
TACTTTCTCTAGAGAGAGAATATTAATAATGCTTACTGGATGTGGTCCGGCAAAACAAGTTTGGTCCGCGCGTTGTTGCG
ATGGAGTAGAGTGGAGTGAATGCCAACACTCAACTTCGACCTCATCGGGTAGTTGTCCTCTTTGTGTAGCGACCTAAAGT
CCGGTAGGGATCTCCGGTCCGGCGAAACCCTAGTCTTTCAGTGTTTATGCAAGCACTACAATAATGTGGTCTTTCGTGAG
GTGATAGCCTCTCCCCAACTGATGTTGCGCCACATTTAAGAGAACTTCCTTACATGGGTCTC--TGCAAAGTTGATCTAC
AACACGGCCTTTGAG-GCGCGGGCATGGTGTCGTGTGTGGCGTTGCATACATAGTCGCTTGGTACCTTGCCCTATGTTCC
GATAAGCCTCCCATCAATTATCCACAAAAAACTATAAATACCTATTTGGTATACAATTATAACAACATACCTATGGGGAG
AAGGGATTTGTGCAGACAGAAAATAGAAAACCACCCAACCGCTCCCGCGTCGCTCCG-ACGGCGAC-GGGGGGATCCCTA
GCGCGCCGCCGCCTCCCCCCCCAAGCTCCTCCATCCCTCTTATTTGTCGCCGCTGGCGTGCTCGGTCTGGCAAAGCTTGG
TCGGAGCTGGC---------------------------------------------------------------------
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>chr5B_572
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-----------C-CCCTTCAACCAGAATTGACTGACTCAAATTCGAAAGTCACGCGACTGACATGTAGCTATTGTGAACA
ACTAACCACGTAGGTGGGTACACGCATGGGATTATGCATGTAGAGCGTGCAACATGCAACACATTTTTCATACGGGCAGT
GCAGTCGTATTATAAATGACAAGTAGTTAAACGCATGACATGAATTACAGCTCAGAACACAGCTAGCACATAAATAGAGC
ATGCAACTTAATTTGTACCCATGTGTCTAAGTAGACACACTGTCACAACTGTCATACCAAATGAGACACTCTGTACCATG
CATGTCAGTGCGTACATAGTCCGTCGGATACACATGTATCCGTCTGAGCTCTTGCAACCTGTTTCCATAAATTTGTGTAG
AC------A-TGTGTGTAGAAATTGACAAACACCTTAGTTTTGTAGAGACCAGACATCTAGAAGAGTGAGGGCATGTGTT
CCCGGAGCAACTCGGCCTTCGTGCCGCCGGTGCCGAAGCCGCAGCAGACGAAGCGGCGGCAGGAACAGGAGTCAAGAGGC
TGTCGCAGGGGATCCCGGGCCTCCCGGCGTGCGTTGGCGAAGAGCGAGGAGGTGCGGAGGTACAGCGCGGTGGAGCGTCG
TGAGCGCATCGAGAGATACCGGAGCAAGCGCAAGCGCCGCAACTTCCAAAAGAAGATCACCGTACGTATTTGCTTTCCGG
TCTCCTGGTTAATTTGCATTCATTCGTTCGCTCAGCCATGCATTTCTTTCTGTATTA----TACTTTGCAGTACGCTTGC
CGGAAGGCGCTCGCGGATAGACGGTGGAGGATCAAGGGGCGCTTCGCACACGCCGGAGAGGAAGAACAAAAGGCGTGCCT
TGCAGAAACGTCAAACCAAGGTTCAAGCAGCACTAGCGGAAGTGCGGTGCCGGAGTGGTGGCCAGCAATGGAGGAGGCGC
TGGCTAGGAAGGAGGAGGTGGATGGCATCACTAAGCTCCTCCGCTGTGACCATGAGATGCTCGTCTCATACCTCGGCCTA
AACCTCTGCTGTGCTCGTGACCCTTCCAACCATCCATCCACCTGAACAATGTAGTGCAATCAAACGCCGTCTATCCAAGG
TCACAAGATTGAAATCCGAAGTTAAAGAAAAAAAAAGGAGTCGTATGTTGAGTTTTTCATTTTTCT---ATTTCCATTTT
TGAAATGAGCTTTTGATCCATCTACGGAAGCTGTTATTTTTTTTCCTTTTTTGAGATCCTATGGAAGCTGTAGGAATTGG
AAGTTCTAGCCAACTCATGGGCCAAATCAAACTTGGGCTATGCATCCCAAATTGCTGTATCTTTGCGGATTAAGAATGCT
TACTTTTTTTAAAGAGAAAATATTAATAATGCTTACTGGATGTGGTCCGGCACAACAAGTTTGGTCCGCGTGTTGTGGCC
ATGAAGTAGAGTGGAGTGAATGCCAACACTCAACTTCGACCTCATCGGGTCGTTGTCCTCCTTGTGTAGCGACCTAAAGT
CCGATAGGGAACTCAGGTCCGACGTGACCCTAGTCTTCCAATGTTTATGGAAGCACCACAATAACATGGTCTTTCATGAG
GTGATAGCCTCTCCCAAACTGGTGTTGCGCCACATTTAAGAGGACTTCCTTACATGGGTCTCTATGCAAAGTTGATCTAC
AACACGGCCTTTGAGTGCGTGGGCATGGTGTCGTGTGTGGCGTTGCATAC----TCGCTTGGTACCTTGCCCTATGTTCT
GATAAGCCTCCCATCAATTATCGACGAAAAACTCTAAACAGCTATTTGGTATACAATTATAACAACATACCTATGGGGAG
AAGGGATTTGTGCAAGCAGAAAACAGAAAACCACCCAACCGCTCCCGAGTCGCTCCGCACGGCGACCTGAGGGAACCCTA
GCGCGCCGCCGCCA------CCAAGCTCCTCCTTCCCTCTTCTTTGTCGCTGCTGGTGGGCTCAGTCTGGCAAAGCTTTG
TCGGAGCCGGCAGCCATGTGCTAGCTTCATCTCCTCGCGTGTTGGAGCCGATGCGGTGCAACTGCTACGAGCCAGGGTGT
GGCGCGGAAAACTGGAACCACGACGCGACATCGTGCAAGTGCGTTTGCGGCGTGATGGGTAGCTCAGAGGGTGGTGGTTA
TGCTGGTGGTGGCCTTGGTGGCTATCCAGGCTTCGCTCAGATCTAGCATGCAGTGGCTACTGGTAGTGAGGACTAGGGAT
GCGTGAGCCGGAGGCTGCT-
>SNPs
------------------S---------------------S-----------S--------SS------S----------
---S-------------------------------------------------S---------------S-----S----
------S----------S-S-S------------------------------S-------S--------S--S-------
-----------S-------------S-----S------------------SS----SS---S----S------SSSS---
----------------S------S----------S---------------SSS-------S--S-------S--------
-----S-S-S-S-S----S----------------------------------------S---SS--S------------
--------------------------SSSSSSSSSSSSSSSSSSSSS--------------S------------------
---S----------------------------------------S-----------S-----------S----S-----S
--S-----------------------------------------------------------------------------
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---------------------------------------S----------------------------------------
-------S--------------------------------S--S-----------------------------------S
S---SSSS--------------S------------------------------------------------S--------
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--------------------------------------------------S-----------------------------
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--S-----------------------------------------------------------------------------
--------------------------S------S----------------S--------------S--------------
--------------------------------S-----------------------------------------------
-------------------------------------------------------------------------------S
-------S---------------------S---------------S----------------------------------
----------------------------S-------------S-----------------------SSS----------S
--------------------------S--------SS-------------------------------------------
--S--------------S----------S------------------------S-------------------------S
--S---SS-----------------S----------------------------S--S---------S--------SS--
----------S----------------------------------------------------------S------S---
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----------------------------S------------------SS----------------S--------------
--------------S---------S-----S----------S-------S------S--------------S--------
------------------------S------------------S------------------------------------
---------S-S---------------------------------------------------S--S-------------
--S------S-----------------------------------------------S----------------------
-S--S-------------S--S----------------S------S--S--S----S---S----------------S--
--------S----S------------------S--S-S------------S-------S--S-S----------------
------------------S-----------------S-------S--S---------------SS---------S-----
--S----------------S
>forward_63
-------------------------------------------GCTCATCTCCTCTCATCGGC-----------------
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>reverse_1608
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-------CCTGTGCTAGTGACCCTTCC-----------------------------------------------------
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>forward_1171
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-------------------------------CGTTGACGAAGAGCGAGGAT-----------------------------
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>reverse_2271
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------------------------------CCGTGTGTGGCATTGCATAG------------------------------
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