>input_sequence_69039
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ATGAGCGGAGGAAGAGCCCCGGTACTGGAGA
AAGTAGAGGGTAAGTTGAAGGACCTGCGGCTGTCAAAAGCTGAGAAGAACAAAATCAGGATCGGGAAGAAGCAAGCATGT
GCCTCGAAGGCGAGCAAGCACCAAGTAGTGGGTAAGATTCTCTCATATAGGCAGGCAAAAGCTGAATATGTAGGAAGAAC
ACTCGGCAATGTCTGGTGCCCGTTCTCAGAAATTCAGTGCAAAGATCTTGGCAGAAACAGGTTCCTCTCTAATATCCATG
ATAAGGCAGTGAAGAAAAAAGCTTTGGAAGATGGACCATGTACCTTCAATAAAGATCTGATAGTAATGGAGGATTACGCA
CCAAATAAGACTATA-ACGAGTATGAATTTAAAACCATCCCGATTTGGGTAAGAGCCTATGGAATTCCTATGGGGATGAT
GAGTAAAGAAATAGGGGATTTCGTAGGAGATCGAATTGGGGAGGTCCTTAATGTGGATTTAGATGACAATGGAGAAGCAA
TGGGGGCTTTTATGAGGATTAAAGTGCATACTGATATTACAGCTCCCTTAACGAGATTCGGAATTTTGATCACTGATGAC
GATGAGGAAGAGCGGGAGTTGCCCAATGAAGAGGTGATGGGTGGCGAAGAGGATGAAATAGAAGGGAAGAGGAAGGAAAA
AGAGAAGATTATTTCCTTTGAATATGAATACTTACCTGACTTTTGTTATAACTGTGGTATCATCGGACATGCAGAGAAGG
CTTGCCCAACAAGATCAAGAAGAG--GGAGCTAG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr5D_1_TraesCS5D01G207900
ACATCAAATCCTCTAAAATTCGAATGCGTT-TATCCAATTTGTTCGGAAGGAGTGCAGAGAGGAAGGCAGCACGCACCTA
GCAGCCTTCTCGAAGGAGGAGTAGGCGTCCCCGAAGCGGCGGAGGGAGTGGGAGTGGATGGCGCGGAGGAGCGGGGGGAG
GAAGTCGGAGAGGTGGGGGAAGCGGTCGGAGGCGAGGCGGGGAAAATCCGGAAAAGCGGCGAGCGCGTCGGAGAGCGGGG
TGGAGGCGGGCGCCGAGGAGATGGCGAGGAGAGAGGCGAGGTCGGCGCCGTCGGACTGAGAGATAGCGTCGTCCAAGCGG
GAGAGGTAGTCAGCGATGCGGCGGTGCGCCTCGCCCATGCTCAGGTACGCCGCCATCTCCGGTGCGGCGGCGGCGGGAGC
CGCGCGGGTGTTGGGGTTTGGGCTTGG--GCTTGGAGGTCACCGACGGTGGAAGAAACCAGTATGAGTTCGATCTGAT-G
TGGGTAGTTCTGGTTTATGCAAGCTGGTGACGATCGCCAATCCTCAACGTCCAGTGCGAGAAATCGATGGTTGAGATTAA
CTGATAAAATCAGAGTAAGGTTTCGCTTGGTTTGCTCATTGCTGCCATCTCCGCCCCTATCCGGCGAGGTAAAACAACTC
GGAGGGTGGGTGCCCAAGAGAGTCCGTCACAACTTGGAGGGTGGGTGCCCAAGAGAGTCTGTCCACACATGACGGTTTCG
TGCCGCTTCTGGCGACTTCGTGGCGAGCCCAGCGCCCTTGGTCGGCAATCTTTTTTT-----GAATCCGAGAATTTTAAA
TCCACAAAAGAGTGCATGATTCCTCGATCTGGTAGCGGCGCAGCGCAATCCTTCTCTCCTCTGGCCATCCTAGTGCTCTC
TCAAGCTGTGAGGGAGAACCTGAGAGCGGGATCTGTGGCGTGGGAGTTTCGTGGTGTGTTAGTTCTTGTAGGGAGGCGGG
GGAGGTAGGTGGAGACAGCGGGGACGAATCCCTGACGGCGGTCGCCGCTATGAGCGGAGGAAGAGCCCCGGTACTGGAGA
AAGTAGAGGGTAAGTTGAAGGACCTGCGGCTGTCAAAAGCTGAGAAGAACAAAATCAGGATCGGGAAGAAGCAAGCATGT
GCCTCGAAGGCGAGCAAGCACCAAGTAGTGGGTAAGATTCTCTCATATAGGCAGGCAAAAGCTGAATATGTAGGAAGAAC
ACTCGGCAATGTCTGGTGCCCGTTCTCAGAAATTCAGTGCAAAGATCTTGGCAGAAACAGGTTCCTCTCTAATATCCATG
ATAAGGCAGTGAAGAAAAAAGCTTTGGAAGATGGACCATGTACCTTCAATAAAGATCTGATAGTAATGGAGGATTACGCA
CCAAATAAGACTATA-ACGAGTATGAATTTAAAACCATCCCGATTTGGGTAAGAGCCTATGGAATTCCTATGGGGATGAT
GAGTAAAGAAATAGGGGATTTCGTAGGAGATCGAATTGGGGAGGTCCTTAATGTGGATTTAGATGACAATGGAGAAGCAA
TGGGGGCTTTTATGAGGATTAAAGTGCATACTGATATTACAGCTCCCTTAACGAGATTCGGAATTTTGATCACTGATGAC
GATGAGGAAGAGCGGGAGTTGCCCAATGAAGAGGTGATGGGTGGCGAAGAGGATGAAATAGAAGGGAAGAGGAAGGAAAA
AGAGAAGATTATTTCCTTTGAATATGAATACTTACCTGACTTTTGTTATAACTGTGGTATCATCGGACATGCAGAGAAGG
CTTGCCCAACAAGATCAAGAAGAG--GGAGCTAGACATTTTGGGCCATGGCTGAAAACTATGATCTACAAGGGCAGCTCA
AGTGAAGAAAAGAATAGAAGTTCGAGCGACCGGGGGGTTTGGAGAAACAACA-GTATGGGTAGCGGAGGCAGCAAACACG
GTAGCAATGGACCAACCTGGAGGAATCATGTGATGGATAGAGCTGATGGAGAAATATTAAGGGAAGGGGACGAAAAGGAA
GTTACAAGCCCCCCTAAAAGTAACCAAGGAAGAACAAGCTGGCTCCGTGGGAGCCAAAAAAT-TGAATTTTGCAGACAAT
CAACTTGTTGTTCTAAAGGAAAAGGAAACAACAATGAGTCCTCGCGACAAGTCGACTGTCTTGGAGGGATCCGCATCAAT
ACGAGAGGCAGGGCCAACAATCACACAGACATCCGAAGTTGTAGCTGGGGGAAAGGAACTGAACCTTAGGGAACTTGCTG
GTTTCAATTCCAATAAAACAGAGGGGAGAGGAGCAGAAATTTGTAAAGGGCAGTCAAGTGGAGGAAGAAGCAGAAAAAGG
AGTAGTTGCTAAGTGTAGGATCAAAAGTATGTCTAGAGGG-GGATGATTAGACTACTTGGCCAAATAAAAACTTATCATT
TTCCCAATTTTAGTTATTGACAAGTTTTAGCAATTCTACCAAGTCAAGCAAGACCCTACACATGCAAGTCTAAGAGTTGT
GCAGCAAAAAGTAAAGACTTTGCATATGAACGTAAAGGAGGAATCAGAGAAATCAAACACAATGAAGACAAGGTGATTTT
TCGCGTGGTTCCGATGGGTGGTGTTATACGTCCATGTTGATGGGGACTTCAACCCAAGGAGGGTAACAGTTGCGCGAGAC
CATGGAGGGCTCCACCCACGAAGGGTCCACGAAGAAGCAAACTTGTCTATTCCACCACGGCTTACGTCACACGAAGGACT
AACCTCACTTGGGGTAGATCTTCATGAAGTGGGCGATCTCCTTGCCCTTACAAACTCCTTGGCTCAACTCCACAAGA
>chr5A_1
ACATCAAATCCTCTAAAATCCGAATGCGTT-TATCCAATTTGTTCGGAAGGAGTGCAGAGAGGAAGGCAGCACGCACCTA
GCAGCCTTCTCGAAGGAGGAGTAAGCGTCCCCGAAGCGGCGGAGGGAGTGGGAGTGGATGGCGCGGAGGAGCGGGGGGAG
GAAGTCGGAGAGGTGGGGGAAGCGGTCGGAGGCGAGGCGGGGAAAATCCGGAAAAGCGGCGAGCGCGTCGGAGAGCGGGG
TGGAGGCGGGCGCCGAGGAGATGGCGAGGAGAGACGCGAGGTCGGCGCCGTCGGACTGAGAGATAGCGTCGTCCAAGCGG
GAGAGGTAGTCGGCGATGCGGCGGTGCGCCTCGCCCATGCTCAGGTACGCCGCCATCTCCGGTGCGGCGGCGGCGGGAGC
CGCGCGGGTGTTGGGGTTTGGGCTTGGTCGCTTGGAGGTCACCGACGGTGGAAGAAACCAGTATGAGTTCGATCTGAT-G
-GGGTAGTTCTGGTTTATGCAAGCTCGTGACGATCGCCAATCCTCGCCGTCCAGTGCGAGAAATCGATGGTTGAGATTAA
CTGATAAAATCAGAGTAAGGTTTCGCTTGGTTTGCTCATTGCTGCCATCTCCGCCCCTATCCGACGAGGTAAAACAACTC
GGAGGGTGGGTGCCCAAGAGAGTA-----------------------------------TGTCCACACATGACGGTTTCG
TGCCACTTCTGGCGACTTCGTGGCGAGTCCAGCACCCTTGGTCGGCAATCTTTTTTTTTTTTGAATCCGAGAGTTTCAAA
TCCACAAAAGAGTGCATGATTCGTCAATCTGGTAGCGGCGCAGCGCAATCCTTCTCTCCTCTGGCCATCCTAGTGCTCTC
TCAAGTTGTGCGGGAGAACCTGAGAGCAGGATCTGTGGCATGGGAGTTTCGTGATGTGTTAGTTCTTGTAGGGAGGCGGG
GGAGGTAGGTGGAGATAGCGGGGACGAATCCCTGACAGCGGTCGCCGCTATGAGCGGAGGAAGAGCCCCGGTACTGGAGA
AAGTAGAGGGTAAGTTGAAGGACATGCCGTTGTCAGAAGCTGAGAAGAACGAAATCAGGATCGGGAAGAAGCAAGCATGT
GCCTTAAAGGCGAGCAAGCACCAAGCAGTGGGTAAGATCCTCTCATGTAGGCAGGCAAAAGCTGAATATGTAGGAAGAAC
ACTCGGCAATGTCTGGTGCCCGTTCTCAGAAATTCGGTGCAAAGATCTTGGCAGAAAGAGGTTCCTCTCTAATATCCATG
ATAAGGCAGTGAAGAAAAAAGCTTTGGAAGATGGACCCTGTACCTTCAATAAAGATCTGATAGTGATGGAGGATTACGAA
CCAAATAAGACTATAGACGAGTATGAATTTAAAACCATCCTGATTTGGGTAAGAGCCTATGGAATTCCTATGGGGATGAT
GAGTAAAGAAACAGGGGATTTGGTAGGAGATCGAATTGGGGAGGTCCTTAATGTGGATTTAGATGACAATGAAGAAGCAA
TGGGGGCTTTTACGAGGATTAAAGTGCGTACCGATATTACAACTCCCTTAATGAGATTTAGAATTTTGATCACTGATGAC
GATGAGGAAGAGCAGGAGTTGCCCAATGAAGAGGTGATGGGTGGCGAAGAGGATGAAATAGAAGGGAAGAGGAAGGAAAA
AGAGAAGATTATTTCCTTTGAATATGAATACTTACCTGACTTTTGTTATAATTGTGGTATCATCGGACATACAAAGAAGG
CTTGCCCAACAAGATCAAGAAGAGAAGGAGCTAGACATTTTGGGCCATGGCTGAAAACTATGATCTACAAGGGCAGCTCA
AGTGAAGGAATGAATAGAGGTTTGAGCGACCGGGGGGTTTTGGAGAAGCAAGGGTATGGGTAGTGGAGGCAGCAAACACG
GTAGCGATGGACCAACCTGGAGGAATCATGTGATGGATAGAGCTGATGGAGAAAGATTAAGGGAAGGGGATGAAAAGGAA
GTTACAAGCCCCCTAAAAA-TAACCAAGGAAGAACAAGCTGGCTCTGTGGGAGCCAAAAAAACTGAATTTTGCAGATAAT
CAACTTGTTGTTCTAAAGGAAAAGGAAACAACAATGAGTCCTCGCGACAAGTCGACTGTCTTGGAGGGCTCCACATCAAT
ACAGGAGGCAGGGCCAACAATCACACAGACATCCGAAGTTGTAGCTTGGGGAAAGGAACTGAACCTTAGGGAACTTGCTG
GTTTCAATTCCAATAAAACAAATGGGAGAGGAGCAGAAATTTGTAAAGGGCAATCAAATGGAGGAAGAAGCGGAAAAAGG
AGTAGTTGCTAAGTGTAGGATCGAAAGTATGTCTAGAGGGGGGATGATTAGACTACTTGGCCAAATAAAAACTTATCATT
T-CCCAATTTTAGTTATAGACAAGTTTCAGCAATTCTACCAAGTCAAGTAAGACCCTACACATGCAAGTCTAAGAGTTGT
GCAGCGAAAAGTAATGACTTTGCATATGAACGTAAAGGAGGAATCGGAGATATCAAACGCAATGAAGACAAGGTGATTTT
GGGCGTGGTTCCGATGGGTGGTGTTATATGTCCATGTTGATGGGGATTTCAACCCAAGGAGGCGCC----------AGAC
CATGGAGGGCTCCACCCACGAAGGGTCCACGAAGAAGTAAACTTGTCTATTCCACCACAGCTTACGTCACACGAAGGACT
AACCTCACTTGGGGTATATCTTCATGAAGTAGGCGACCTCCTTGCCCTTACAAACTCCTTGGCTCAACTCCACAAGA
>chr5B_1
ACATCAAATCCACAAAAAAATTGAATAAATATATCCAAATTGTTCGGTAGGAGTGCAGAGAGGAAGGCAGCACGCACCTA
GCAGCCTTCTCGAAGGAGGAGTAGGCGTCCCCGAAGCGGCGGAGGGAGTGGGAGTGAATGGCGCGGAGTAGCGACGGGAG
GAAGTCGGAGAGGTGGGGGAAGCGGTCGGCGGCGAGGCGGCCGAAATCCGGAAAAGCGGCGAGCGCGTCGGAGAGCGGGG
TGGAGGCGGGCGCCGAGGAGATGGCGAGCAGAGAGGCGAGGTCGGCGCCGTCGGACTGAGAGATAGCGTCATCCAAGCGG
GAGAGGTAGTCGGCGATGCGGCGGTGCGCCTCGCCCATGCTCAGGTACGCCGCCATCTCCGGTGCGGCGGCGGCGGGAGC
CGCGCGGGTGTTGGGGTTTGGGCTTGG--------AGGTCACCGACGGTGGAAGAAACCAGTATGAGTTCGATCTGATGG
-GGGTAGTTCTGGTTTATGCAAGGTGGTGACGATCGCCAATCCACGCCGTCCAGTGAGAGAAATCGATGGTTGAGATTAA
CTGATAAAATCAGAGTATGGTTTGGCTTGGTTTGCTCATTGCTGCCGTCTGCGCCCCTATCTGGCAAGGTAAAACAACT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>SNPs
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
S--------------------------------------------SS---------------------------------
--------------------------------------------------------------------------------
-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
----S----------------------S-----S--------------------------------------S---S---
----------------------S--S------------------------------------------------------
-----S----S----------------S-----------S-------------S--------------------------
---------------S--------------------S-------------------------------------------
-----------------------S---S-S-----S--------------S-----------------------------
----SS-------------------S------------S-------S---------------------------------
-----------------------------------S---------------------S----------------------
-------------------------------------S--------------------------S-------------S-
----------------------------------------S---------------------------------------
-----------S---------S-------------------------------------------------S--------
------------S--------------S---S---------S---------S------SS--------------------
-------------S------------------------------------------------------------------
---------------------------------------------------S------------------S--S------
--------------------------------------------------------------------------------
-------S--S-------S---S-----------------S-SSS--SS-SS-----------S----------------
-----S------------------------------------------------S---------------S---------
-------------SS----S-------------------------S---------------S--------------S---
--------------------------------------------------------------------S---S-------
--SS------------------------------------------S---------------------------------
--------------------S-S-----------------------------S----S-------------S--------
----------------------S---------------------------------------------------------
-S---------------S---------S--------------------S-------------------------------
-----S--------S------------------------------S----S-------S---------------------
SS--------------------------S-----------------S---------------SSSSSSSSSSSSSS----
-------------------------------------S--------------------S---------------------
----------------S-------------S-----S----------------------------------------
>forward_526
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GTGACGATCGCCAATCCTCA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_1754
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GAGAAGG
CTTGCCCAACAAG-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>forward_1070
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TAAGTTGAAGGACCTGCGGC--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_2624
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TAACAGTTGCGCGAGAC
CAT-----------------------------------------------------------------------------
-----------------------------------------------------------------------------
