>input_sequence_69036
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ATGGCGCACGGCAGAAGCAGTTCCTGGCGGCTGCATGCGCGTCTACTCGCGGTGGTCGGGCTCCTCGCCTGCGCAGCCGT
CGCGCCGCGCTCCTCGGCGCTCAACGTCGGCCTCCAGACCCTCGACGCCGACGGCGACGGCGTGGTACGTGCACGATCTA
CGCATGTACTATGACCTAGT--------ACACTTTATAGCACGTTATTAAGCTGGGTATGCTTTGCTTTGTCGACTAACT
CTCGGCGGCCGGCGGCGGC-GGGACGCGGACGCAGAGCAAGCAGCAGGCGTGCAGCCGAACGTGCGAGTCCGACCACTGC
ACGAGTACGCACGCGCATCACCTTCTTCTTCTTCTTTAGAACTTAGAAGTAACTGCATGGTAGCTCACACCGAGATGTTT
GTCGATGATCTCTTGACGCAGCGGCGCCATTCCTGCGGTACGGCAAGTACTGCGGCATCCTCTACAGCGGGTGCCCCGGC
GAGCGGCCGTGCGACCCCCTCGACGCCTGCTGCATGCACCACGACAACTGCGTCCTCGTCAAGAGTACGTACCCC-AACA
ACCAATTGATCCATCAACTATTTATGTAGCCGGCGTCTGACTCTCGATCGGCACATCAGATGACTACCTGAGCACGGAGT
GCAACGAGGGCCTGCTGGAGTGCCTGGCGGAGTTGCGGGACGGCACGGGCACCTTCGAGGGGAACAAGTGCATGATCGAC
GAGGTCATCGACGTGATCACCGTCGTCATCGAGGCCGCCGTCGTCGCCGGCCGGGTCCTGCACAAGCCCTAG--------
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>chr4B_1_TraesCS4B01G043300
GCCGACGGCGCCGGCCATTTTTTCCGATGAAAAAGGATACATAGATAGTTCTTGCATACAC-------AGATAATATCAA
CTACTCGTCGCTTTCCGACTCTGACTCGGTAATGTCCTCCTCCGACGTTTGAATGTAGGCGTCAGCAACGTGCTCGTCCT
CGAAGTCCCACC--------------------------------------------------------------------
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-CCGAGGATGCGCATCGACATGGTGGCGCACAGGCAGCGAGGCTAGAGAGAGGGGGCGAGATGAGTGGGCGGCGGCGACA
AACTGAGTGTGGAGAGAGTGTCATATTATAACGAGCGCCGGCTGCGGCGCGCCAAAATGCGCGCGCGAACATTTCCCGCG
CTCTGGAGCGCCAAAGCCAGCGT--GCTAGGCCGAATTTCCCCCGTGCCGGCGAACCTTTCCCGCACGCTGGCATTGCCG
CTGGCATGATCTAAAGCGCGCGCGGTCATGAAATGGGTCGGCGCGTTGGGCGCGCTGCCGACCTAAATCTAAAAAAGGAC
GGACGACGGTCGCAAAAGACGGACAAAAACACCGTCCGTTTGGATAGCCCCGTTGGAGTTGCTCTAATCACCCAATTATT
TTCGCCGAAAGAGACT----------ACGGAAAAGGAAAAGGAAGAGAAGGC--------GCTGGATGGCACACATGGTC
GCCGGCTGGATCGATTGCCC----ACCGACGTGGTGCATGCACGGCATCTTCCTCCGCGCTGTCGACTGCCAGCCCGTGT
CCCCGTGAGCTAGCCAACAAG--TCCCGCGCGATCACGAGCAGGATACAACCAAAACGCGCACCCGCACCCCATCTTCAC
CCC-CTCTTTCTCTCTCTAAATCAGTGCTGCAACTAGC-AACTACAGTTGCAGATCGAGTTCTCCTCGTCGCTCCAGCCA
ATGCACCCCTCCG----------CTAGATAATATCTTATCTCGCCGAGAACGACGGCAGGGCAGGGC---GCGCGGTATA
AGTTCAGCTGCAGGCGGCCGCCGTCTCGATCGACACAAAGAGAGGGAGAGGGAGGGGGGTCTGA---TTTTTTGAAGGGG
ATGGCGCACGGCAGAAGCAGTTCCTGGCGGCTGCATGCGCGTCTACTCGCGGTGGTCGGGCTCCTCGCCTGCGCAGCCGT
CGCGCCGCGCTCCTCGGCGCTCAACGTCGGCCTCCAGACCCTCGACGCCGACGGCGACGGCGTGGTACGTGCACGATCTA
CGCATGTACTATGACCTAGT--------ACACTTTATAGCACGTTATTAAGCTGGGTATGCTTTGCTTTGTCGACTAACT
CTCGGCGGCCGGCGGCGGC-GGGACGCGGACGCAGAGCAAGCAGCAGGCGTGCAGCCGAACGTGCGAGTCCGACCACTGC
ACGAGTACGCACGCGCATCACCTTCTTCTTCTTCTTTAGAACTTAGAAGTAACTGCATGGTAGCTCACACCGAGATGTTT
GTCGATGATCTCTTGACGCAGCGGCGCCATTCCTGCGGTACGGCAAGTACTGCGGCATCCTCTACAGCGGGTGCCCCGGC
GAGCGGCCGTGCGACCCCCTCGACGCCTGCTGCATGCACCACGACAACTGCGTCCTCGTCAAGAGTACGTACCCC-AACA
ACCAATTGATCCATCAACTATTTATGTAGCCGGCGTCTGACTCTCGATCGGCACATCAGATGACTACCTGAGCACGGAGT
GCAACGAGGGCCTGCTGGAGTGCCTGGCGGAGTTGCGGGACGGCACGGGCACCTTCGAGGGGAACAAGTGCATGATCGAC
GAGGTCATCGACGTGATCACCGTCGTCATCGAGGCCGCCGTCGTCGCCGGCCGGGTCCTGCACAAGCCCTAGCTACATAG
TACCACAACGGCGCGCGCGCCGAGCCGGCCGGCGAGCTGGGGGGACAAGC---AACAACTTGCTCGGTAGGTGGGTGGTG
CATGCCTTTTCTGCTTGGTGTCACTCGTCAGTCACGGTGTGTGTCCGTGTCCTGTCACGCGCGCACCGGCGCCTCACGTA
CAGTCTCGCGGGCACGGG----------------------CTAAGATCGACGACGGCGCCGGATTTTGCGACATGTATAT
--------GGGCATGGTTACCATCACCTGCTTTGCAGGATTTTATTTAC----TTGATGAGTTGGTTCGTCT--------
TTGCCTACACGCATCATGCCCAGCTCGTACGCTACGTGTTCATGTCATGCATAATTGGTATACTTAC--TACACTGTTGT
TACCACTGTTCAAATTTCAGTGAATTTTGCTGCTTAAAGCTACTTCGGATTTTGGGGGTAATCTATAGATCAGTACCGTA
ATTTGTGTCGTCTGAATTATGTATAGAACAAAAGCAACTTGTCCATTAATTGGATTATTATATGATGTTGATGTGATGGC
GACGCCTTTCAGAGTGTACGGCTGCCCCGGTTCGATCTGCATATAACGTGATTACTTTTGCACACAATCGTTTTCTTTCT
TTAGAGAAAGGACTCTTTGGCTAGGTTTCTCTTTCCTCCCGCTGGTGCCCTGGTGCCCTCGCCGGTCTACCTCGTCTTTG
TCTTAGGCCATGGAGGCGCGGTGGATTCCGGCCTTTACTGACGGGAGGGTTTCGTTTTTCCATGATTTTTGAGTTTTGTT
AGGATTTGTGTCCTACTCAGAAAGGTGAAGCGGCGACGGCTTTCTGAAATGGAATAAGGTTCTATATAGCCCAATTCCGG
TGGTGTTTCTAGCACCGTCGGAGGGCGTGTGAAGTGTCTCCAACGGATCTCGTGGGATTCGGTCAGCATTTGTCTTCAGT
GGATCCACGTGGATCCGATCTTTGTTCGTCTGTGTTTGTGTGCCTATAAGTTGGATCCTTCCGATCTACACTTCTCTTC
>chr5B_1
GCCGACGCCGCCGGCCATTTTTTCTGATGAAAAAGGATATATAGATAGTTCTTGCATACAT-GATAAAAGAAAATATCAA
CTACTCGTCGCTTTCCGACTCCGACTCGGTAATGTCCTCCTCCGACGTCTGAATGTAGGCGTCAGCAGCATGCTCGTCCT
CGAAGTCCCACCCCAATGTTTCTCGCAGCCTTAGTCTCATTTGAGTGGTCAGCTTCCACGTGCGCTTGCCCTCCCGATAG
GCAGCTCGGCCG--------------------------------------------------------------------
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-------------CCGGAGGTGCCACGCTACCGCGTCATATGCACGGGCCGCCTGCTCAGCGGTGTCGAAGGTGCCGAGG
ATGAGTAGTTTCTCGCCAAACAAAATCTCGGCAGAGAAGGCGACGGAGGGCCGCTCGCGGACTCCGAGAAAATCCGAAGC
GCCGAGGATGCGCATCGACATGGTGGCGCACATGCGGCGAGGCTAGTGAGAGGGGGCGAGACGAGTGGGCGGCGGCGGCA
TACTGGGTGTGGAGGGAGCGCCATATTATAACGAGCGCCGGCCACGGCGCGCCAAAATGCGCGCGCGAACATTTTCCGCG
CTTTGGAGCGCCAAAGCAAGCGCGCACTAGGTCGAATTTCCCCCGTGCCCGCGAACCTTTCCCGCACGCTAGCATTGCCG
CTGGCATGATCTAAAGCATGCGCGGTCATGAAATGGGTTGGCGCGTTGGGCGCTCTGCCGACCCAAATCTAAAAGAGGGC
GGACGACGG-----------------------------------------------------------------------
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>chr5B_1
GCCGATGCCGCCGGCCATTTTTTCCGATGAAAAAGGATACATAGATAGTTCTTGCATACACAGATAAAAGAAAATATCAA
CTACTCGTCGCTTTCCGACTCCGACTCGGTAATGTCCTCCTCCGACGTCTGAATGTAGGCGTCAGCAGCGTGCTCGTCCT
CGAAGTCCCAACCCGATGTTTCTCGCAGCCTCAGTCTCATTTGAGCGGTCAGCTTCCGCGCGTGCTTGCCCTCCCGATAG
GCGGCTCGCTCCGTCCTCCTGGCCTTCCTCTCCGTCGCCCTCTGCTCACAGAACTGACGTTCGTCGATGATGTCCTGCGA
GAAGCGTTCGCGCCACAGCACCAAAGCTTGCACGTCCATCTCGGCGATGGCGAGGCGACGCATCCGCCTCCGGTGGACGC
GACGATCCTCGTCAGTGAAAAGCCGCAGGAGAGGCGCCAGATCCTGCGCCCGCTGTTTCGGCACGTCAGGAAAATTCATC
TCCCGACTCGGCCCCGAAGGCGCCATGCTGCCGTGTCGTACGCACGGGCCGCCTGCTCAGCGGTGTCGAAGGTGCCGAGG
ATGAGTCGTTTCTCGCCAAACAAAATCTCGGCGGAGAAGGCGACGGAGGGCCGCTCGCGGACTCCGCGAAAATCCGAAGC
GCCGAGGATGCGCATCGACATGGTGGCGCACAGGCGGCAGGGCTAGTGAGTGGGGGCGAGACGAGTGGGCGGCGGCGGCA
TACAAAGTGTGGAGGGAGCGCCATATTATAATGAGCGCCGGCCGCGGCGCGCCAAAATGCGTGCGCGAACATTTCCCGCG
CTTTGGAGCGCCAAAGCCAACGCGCGCTAGGCCGAATTTTCCCCATGCCCGTGAACCTTTCCCGCGCGCTGGCATTGCCG
CTGGCATGATCTAAAACGCGCGCGGTCATGAAATGGGTTGGCGCGTTGGGCGCGCTGCCGATCCAAATCTAAAAGAGGGC
GGACGACGG-----------------------------------------------------------------------
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>chr4D_520
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-------------------------------------GTTTGGGATGCCCGGCTGTAGATGCTCTAGTCACCCAATTATT
TTCGCCGAAAGAGACT----------ACGGAAAAGGAAAAGGAAGAGTAGGCGCTGGAATGCTGGATGGCACACATGCTC
GCCGGCTGGATCGATCGCCC----ACCGACGTGGTGCATGCACGGCATCTTCCACCGCGCTGTCGACTGCCAGCCCGTGT
CCCCGCGAGCTAGCCAACAAG--CCCCGCGCGCTCACGAGCAGGATACAACCAAAACGCGCACCCGCGCCCCATCTCCA-
-CCCCCCTTTCTCTCTCTAAATCAGTGCTGCAACTAGCCAACTACAGTTGCAGATCGAGTTCTCCTCGTCGCCCCAGCCA
ATGCACCCCTCCGCCGGGTCTCCCTAGATAATATCTTATCCCGCCGAGAACGACGGCAGGGCTGGGCACGGCGCAGTATA
AGTTCAGCTGCAGGCGGCCGCCGTCTCGACCGACACAAAGA----GAGAGAGAGGGAGGGATCTGATTTTTCTGGAGGGG
ATGGCGCATGGCAGAGGCAGCTCCCGGCGGCTGCATGCGCGTCTACTCGCGGTGGTGGGGCTCCTCGCCTGCGCCGCCGT
CGCGCCGCGCTCCTCGGCGCTCAACGTCGGCCTCCAGACCCTCGACGGCGACGGCGACGGCGTGGTACGTGCACGATCTA
CGCATGTACTATAAGTCTATAACCTACCACACTTTAGAGCACGTTATTAAGCTGAGTATGCTTTGCTCTGTCGACTAATT
CTCGGCGGCCGGCGGCGGCGGGGACGCGGACGCAGAGCAAGCAGCAGGCGTGCAGCCGAACGTGCGAGTCCGACCACTGC
ACGAGTACGCACGCGCATCAACTTCTTCTTCATCTTCG----TTGGTAGTAACTGCATGGTGACTGACTGATGATCTCTT
T---------TCTTGACGCAGCGGCGCCTTTCCTGCGGTACGGCAAGTACTGCGGCATCCTCTACAGCGGGTGCCCCGGC
GAGCGGCCGTGCGACCCCCTCGACGCCTGCTGCATGCACCACGACAACTGCGTCCTCGTCAAGAGTACGTACCCCCAACA
ACCAATCGATCCATCAACTATTTATGTAGCCGGCGTCTGACTCCCGATCGG--CATCAGATGACTACCTGAGCACGGAGT
GCAACGAGGGCCTGCTGGAGTGCCTGGCGGAGCTGCGGGCCGGCACGGGCACGTTCGAGGGGAACAAGTGCATGATCGAC
GAGGTCATCGACGTGATCACCGTCGTCATCGAGGCCGCCGTCGTCGCCGGCCGGGTCCTGCACAAGCCCTAGCCA-ATGG
TATCACGACGGCGCGCGCGCCGA----GCCGGCGAGCTGGGGGGACA-----------------CGGTAGGTGGGTGGTA
CATGCCTTTTCTGCTTGGTGTCACTCGTCAGTCACGGTGTGTGTCCGTGTCCTGTCACGCATGCACCGGCGCCTCACGTA
TAGTCTCGCGGGTACGGGCGTGACATGGTTGGTGCTTCAGCTAAGATCGACGATGGCGCCGGATTTTACGACATGTATAT
CAGTATATGGACATGACTACCATCACCTGCTTTGCAGGATTTAATTTAC----TTGATGAGTTGGTTCGTCC--------
TTGCCTACAC--ATCATGTGCAGCTCA-----TACGTGTTCATGTCATGCATAATTGGCAC---TAC--TACACTATTGT
TACAACTGTCCAAGTTTCGGTGAATTTTGCTGTTTAAAGCTGCTCTGGATTTTGGGGGTAATCTATAGATCAGTACTGTA
ATTTGTGTCGTCTGAATTATGTATAGAGCCTTTCTGTGTAG---------------------------------------
-------------------GGCTG--CCGGTTCGATCTGCATATAACGTGATTAGTTTTG--------------------
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>chr4A_547
TAA-----------------------------------------------------------------------------
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--------------------------------------------------------------------CACCCAATTATT
TTCGCCGAAAGAGACCACCCATGTAAAGGAAAAATGAAAAGTCCGGGAAGGC--------GCTGGATGGCACACATGGTC
GCCGGCTGGATCGTTCGCCCACCGACCGACGTGGTGCATGCACGGCATCTTCCTCCGCGCTGTCGACTGCCAGCCCGTGC
CCCCGCGAGCTAGCCAACAAGCCCCCCGCGCGCTCACGAGCAGGATACAACCAAAACGC----------CCCATCTCCG-
-CC-CCCTTTCTCTCTCTAAATCAGTGCTGCAACTAGCCAACTACAGTCGCAGATCGAGTTCTCCTCGTCGCTCCAGCCA
ATGCCC---------------CCCTAGATAATATCTTATCAAGCCAAGAACGACGGCAGGGCTGGGCACGGCGCGGTATA
AGTTCAGCTGCAGGCGGCCGCCGTCTCGATCGACACAAAGA----GAGAGGGAGGGGGATCTGA---TTTTTTGAAGGGG
ATGGCGCATGGCAGAGGCGGTTCCCGGCGGCTGCATGCGCGTCTACTCGCGGTGGTCGGGCTCCTCGCCTGCGCCGCCGT
CGCGCCGCGCTCCTCGGCGCTCAACGTCGGCCTCCAGACCCTCGACGCCGACGCCGACGGCGTGGTACGTGCACGATCTA
CGCATGTACTATAACC---T--------ACACTTCATAGCACGTTATTAAGCTGGGTATGCTTTGCTTTGTCGACTGATT
CTCGGCGGCCGGCGGCGGCGGGGACGCGGACGCAGAGCAAGCAGCAGGCGTGCAGCCGAACGTGCGAGTCCGACCACTGC
ACGAGTACGCACGCGCATCAACTTCTTCTTCTTGATTAGAACTTAGAAGTAACTGCATGGTGGCTCACGCCGAGGTGTTT
GTCGATGATCTCTTGACGCAGCGGCGCCCTTCCTCCGGTACGGCAAGTACTGCGGCATCCTCTACAGCGGGTGCCCCGGC
GAGCGGCCGTGCGACCCCCTCGACGCCTGCTGCATGCACCACGACAACTGCGTCCTCGTCAAGAGTACGTACCCC-AACA
ACCAATCGATCCATCAACTAAAT-TGTAGCCAGCGTCTGACTCTCGATCGGCACATCAGATGACTACCTGAGCACGGAGT
GCAACGAGGGCCTGCTGGAGTGCCTGGCGGAGCTGCGGGCCGGCACGGGCACGTTCGAGGGGAACAAGTGCATGATCGAC
GAGGTCATCGACGTGATCACCGTCGTCATCGAGGCCGCCGTCGTCGCCGGCCGGGTCCTGCACAAGCCCTAGCTACATAG
TACCACGGCGGCGCGCGCCG-GA----GCCGGCGAGCTGGAGGACAAGCAGCAAACAACTTGCTCGGTAGGTGGGTGGTG
CATGCCTTTTCTGCTTGGTGTCACTCGTCAGTCACGGTGTGTGTCCGTGTCCTGTCACGCATGCACCGGCGCCTCACGTA
CAGTCTCGCGGGCACGGGCGTGACATGGTTGGTGCTTCAGCTAAGATCGACGATGGCGCCGGATTTTGCGACATGTATAT
--------GGGCATGGTTACCATAACCTGCTTTGCAGGATTTAATTTACTTGATTGATGAGTTGGTTCGTCTTTGCCAGT
TTGCCTACAC--ATCATGTGCAGCTCG-----TACGTGTTCATGTCACGCATAATTGGTAG---TACTATACACTGTTGT
TACCACTGTTCAAATTTCAGTGAATTTTGCTGCTTAAAGCCACTTTGAATTTTGGGGGTAATTTATAGATCAGTACTGTA
ATTTGTGTCGTCTGAATTATGTATAGAGCTAAAGCGACTTGTCCATTAATTGGATTATTATATT-TGTTGATGTGATGGC
GACGCCTTTCTGAGTGTATGGCAG--CCGGTTCGATCTGCATGTAAGGTGATTAGTTTTGTAAACA--------------
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>SNPs
-------S---------------------------------------------------------------S--------
---------------------S--------------------------S------------------S------------
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-----------------------------------S----------S--------------S---------------S--
S-------------S---S-S---------------------S-------------------------------------
--S-------------------S--------------------------S------------------------------
--------------------------------------S------------------------S----------S---S-
---------SSSSSSSSSSSSSSSSSSSSSSSSSSSS------SSS----S-S--S--S-------S-------------
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---------------S----------------------------------------------------------------
-----S-----------------S--------S----------------------------------S--------S--S
S----S--------------------------------------------------------------------------
----------------------------------------S---------------------S-----------------
-----------------------------------------SSSS-----------------------------------
--------S------S--------S-------------------------------------------------S-----
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------------S---SSS-----------------------------------------------------------S-
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--------------------S----------------------------------------S------S-----S-----
----------------------------S---------------------------------------------------
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------S-------------------------------------------------------------------------
--------------------------------S------S------------S---------------------------
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------S----------------SSSS--------------------SSS------------------------------
------------------------------------------------------------SS------------------
-----------------------------------------------------S--------------------------
------------------------------------------S-------------------------------------
----------SS------SS-------SSSSS----------------------------SSSS----------------
---------------------------------------------S------------------------------S---
---------------------------S-S-----S---------------------------SS---------------
----------S-------S-----SS----------------------------S-----S-S---SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1224
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----CCGTGAGCTAGCCAACAAGT--------------------------------------------------------
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>reverse_3245
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--------------------------------------------GGATCTCGTGGGATTCGGTC----------------
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