>input_sequence_69035
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--------------------------------------------------------------CAGCGTCATTTTCATATA
TGGCAGCCGGCGCCGGCGTCTTGTGCAAGGCCTCAAGGTTCCGTTGGCTATGCTTGGTGCGCAGCGTGGTCGCCACGGCG
GTCGCCGTGTTCGCCGGCGTCCTCGTTGTCTGGGCAGTGTTCCTGCTGTTCAATCCCCTCAAGCTCCAACTCCGGATCCC
TAGCAGCTCCGTGGCGGTAAGAAGAGTCTCCGAATCCGGTGACCT---GTACCGTTTCACCTTCTTTCTCCAGGCTACCA
ACCTCAGAAATCGCACCTCCATCTACTACCACAACGTCACCATCCGGCTCGCCGACAGCCAGGAGTACCTATCCTTGCCA
CCGGAGAACCGGACCTTCATCGCTACGTTCAACCTGAA---GGCTAAGATATTCTTGTCTCAAGGGAAGGAGGCCGAATA
CATCTTGACGGAGCGCGTAGGCATGAAGTTGAACCTGTCGTACCTCCGGAAGCTCTTGCCCAACCAAACAGGCCACAACA
GCATCGACGTGGCCATGGAGGTGGATGGCTTCATCACCGACTACGGCCCGGGTGTGGCCCACCGCGCCACCTACATCTGC
ATCCCGCTCAAACTCATGGGCAACTCCCCGCTGTCGTCGCTGTTCGACGAGAGCAACGCCTATTGCGCGCCTACTTACTA
ATGTTTTATGATGGATGGATGGATGTACTCGACCCGATTGCTTGTTGTACTTAAGTGAGGTACTACAGTTTCTTCTTTAC
TAGCTATTTGCCCATGCATTGAAATGGGGGTATAAATATTCTAGTGTTCA------------------------------
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>chr4A_1_TraesCS4A01G317100
GACAGAGACAGGTATGTATTTTATTGTATACTCAAACTATATACACCGTTGGATGTGCTTGATGCACTGCATTATTGCTG
GACACCTTGTCACGAATAATGGAGAATTCAGATAGTCAAAAAGTTTTGATGAACTTTGGAAAACTACAGAAAGGTTTTAT
TACGTCTGAAAAAATTTAAAATTCTGATCAAGCTTTTGTAAACTACTCTATAAAATATTTTCAGAAGCTATGAAAAAAAT
TCAGGATATCTGACATGTGTTTCCGCTAGGATCCTTTCTATTTTGAAATGGAGGGAGTACTTGCAATAAGCTCATTCAAA
TACAACAACTAGTGCCGGTCTCAAAGTCATTGTGTGGCCCTGATAAGAGGGATGCCTAGTCCCAACAGTACCAATAGGCG
GGGACAA-ATCGAAGAGTTTATTTCATCTCGTCATTGTGTGTATCGAT---------ATCGTGCATAGTCCACAAAGATG
AAGCGGTGGTA--CATGTACTTGAAACAAATGAATTAAGGAAAATAGTATTATTATTTTGGAAAATAAATGGTTGCGCTG
CATGGATACGTACGTAGCCATAAAGGAAAATAACAGCCGATCCTTTTTCTTTTTGAAAAGAAAAGATAAC-CATGCGCTG
CATGAGTACGTACAACACTGAAATTAGCCAAAATCGGCGTATGGGCCTCTTTCTTTGCCTTTTGGATGGTTCTATATAAA
TTTTTGCCCTAAAATAAAGTTATATACTGTACTATATTTTTCTCCCTCTGAAACACACAGCCTTTTCTTTTTCTTTTCT-
----TTTCGAAAAGAAAAGAAAATCATGTGCT----GCATGGG-------------------------------------
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-TACCTACCTCATTGAAATCAGCCAAAATCTACGTAGGGCCCTTTCTTTGCCTTTGGGGTAGTTGATTTTTTTCTTTTCT
CTGAGACACACAGCCGGTCCTTTTTTTTCTTTTTGAAAAGAAC-------TATGCGCTGCATAGATACGTACCTCATCGG
TTCAGAATTTTGAA-----------------------------------ACACACCAGCTATCAGCGTCATTTTCATATA
TGGCAGCCGGCGCCGGCGTCTTGTGCAAGGCCTCAAGGTTCCGTTGGCTATGCTTGGTGCGCAGCGTGGTCGCCACGGCG
GTCGCCGTGTTCGCCGGCGTCCTCGTTGTCTGGGCAGTGTTCCTGCTGTTCAATCCCCTCAAGCTCCAACTCCGGATCCC
TAGCAGCTCCGTGGCGGTAAGAAGAGTCTCCGAATCCGGTGACCT---GTACCGTTTCACCTTCTTTCTCCAGGCTACCA
ACCTCAGAAATCGCACCTCCATCTACTACCACAACGTCACCATCCGGCTCGCCGACAGCCAGGAGTACCTATCCTTGCCA
CCGGAGAACCGGACCTTCATCGCTACGTTCAACCTGAA---GGCTAAGATATTCTTGTCTCAAGGGAAGGAGGCCGAATA
CATCTTGACGGAGCGCGTAGGCATGAAGTTGAACCTGTCGTACCTCCGGAAGCTCTTGCCCAACCAAACAGGCCACAACA
GCATCGACGTGGCCATGGAGGTGGATGGCTTCATCACCGACTACGGCCCGGGTGTGGCCCACCGCGCCACCTACATCTGC
ATCCCGCTCAAACTCATGGGCAACTCCCCGCTGTCGTCGCTGTTCGACGAGAGCAACGCCTATTGCGCGCCTACTTACTA
ATGTTTTATGATGGATGGATGGATGTACTCGACCCGATTGCTTGTTGTACTTAAGTGAGGTACTACAGTTTCTTCTTTAC
TAGCTATTTGCCCATGCATTGAAATGGGGGTATAAATATTCTAGTGTTCAGCATAAATCATGTCCAATGTATACCTTACA
TTCGTGTACTCTAGATTTTGATAAAATTTAATTTAGTTTGAGTACGGGTAGATGAAGACAAGTATAGTTATCATTTAGTT
GAGATTTTGACAAGATTTGATTTGATTTGGATATGGATAGGAAAGAGTAAGATTTTTTTTATTGAGCTGAGATTTTTGTA
AGAATTCATTTTATTTTCTTCGATTGAGTTGAGACATGACTTGGTTTTAGAAAGTATCGATTTTGTTTTGATTACTTCAA
GTTACTCTATTTACATTGGTTTTATTATGCGACATCTGTTGAAATTACCAAAAAGAAAAGTGGAGGAAGAGGCATGGGGA
GGAAAAACCGGGGGAGAAGGTGGAGGCGATGCTACCAGCTCCCTTTAATGGTACAGATCCTCGGTGCAGCCTAAATTCTT
AACTATTACTCCTTCCATTCACAAATATAAGATGTTTCCGATATTTGGATATCAACTATGTATGCGTTAAAGTTAGTGGA
CAATTACATTAAAACGTGTCTATATGCATTCATTTAGGAAAAAGTTAAACATCTTATATTTACTAGTAGAGTGCCCGTGC
GTTGTCATGGGCGACAAACATATAAGTTTTTATATATAAGTTGCATCCCGATTTTAATAAATTTAAGCTCACTTATAAAT
CACTTGTTGATGATTATTCTAGAGGATTTACAATGTAAGGTATGTGATATTGTTCACTATAAAAATATGTTACATTTCTC
TAGGAGCAAATAGTTGATTTCATTTATATAAAAGAACAACCGGTTTTTGTAATAAAAAAATAGGTCACTCCTCTCACTTC
CTCACTGTATGGACACAAGCCCTTACTCACATCTCACTCAACCCACACAAGTTGACACCGCCATGTCTCCTCGCCATAGT
TTCGCCACCACCATATCTCCTCGCCACGATGTCGCGGTTGCCATATCTCTCCTCCTCGTGGCTTGGATCTTCTGCCACCC
CTCCATGCTC
>chr5B_328
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-------ACTAGTGCCGATCTCAAAGTCATTGTGCGGCCATGACAAAAGGGATGCCTACTCCCAACAGTATCAATAGGCG
AGGACAAAATTGAAGAATTTACTTCATCTGATCATTGTGTGTATCGACTAAGCATGAATCGTGCATAGTCCATGAAGATA
AAGCGGTGTGGAGCATGCACTTGAAACAAATGCATTAAGGAAAATAATATAATTACTTTGGAAAATAAATGTTTGC-CTG
CATGGATACGTAAGTAGCAACAAAGGAAAATGACAGCCGGTCCTTTTTCTTTTTGAAAAGAAAAAGATAATCATGCGCTG
CATGGGTACGTACAACACTGAAATTAGCCAAAAACTGCGTGTGGGCCTCTCTCTTTGCTTTTGGGATGGTTATAACTTTT
TT------------------------------------------CCTCCGAAACACACAGCCTTTTCTTTT-CTTTTCT-
----TTTTAAAAAGAAAAGATAATCATGTGCT----GCATGGGTACCTATCTCATTTTCTTTCATGGTAATGCGTGCCTC
ATTTATATCATAAGGATCAGAGTACAAGCTACGTATATATCGACCTGACAAAACTGAAAAGACAGCAGAACGCTAGCCTT
TGCACACAAGAACACCAGCCAACAAGTAAAATTACAAACAAGACTGAAGAATCCTCTGAGCTTGACACCAACGTCCGTCA
CCTGCCTCTGGCACCACCATGGCAGCCACCAAAGAAGAAAATGACGGATCACCTCCACACCCGAGCTCGACGCGGCTCCA
TCGCTGATATGCAGCTTTGCGGACCTCCAAGGTGGCTCGCCAATAAAGGCGAAGCCATTGCCGTTGAACGAATCAGACAG
GGGCAGCACCCCGGACACGTCATCGAACTCCAGATCCGGCACCTCCGCGCAACTAAGACGTTGGAGGAGCAAACCATACC
TGCCTGCCACGAACCACGAACCCAGATCCACCATCTTTCATATGCCGCCGATGCAGACCACAATCTGCATCCCCTCCTGG
ACTACCTCCCAAACTCCACGTCGGCGCTGGAGCAAACACCGGCGCAACGGCGGAGCCCGAGGACACAGGTCCACCACGAG
GATGCCTCCGCCGCCGCACCATCCTTGCTTGAACAGTCTGGTTTCCAAATCCATCCAAAAAGCGGATCGCCTCGTTGGAG
AAGGATCTGAAGATTTATTAGTCGGCGCTGTCATCGCCACCGTCCACCATCGAAGCCATGACGATGAACAACCCAAAATC
CTAATAAAACTAATGCCTAAAACAATCCACACGCGTGGATCCGGTGACCCCCTTACCACCGACGACCGAGGTCGTCAGCG
GAGGGGAGCCGCCGGAGGACGGCGACGGAGAAAGACGCCCTGGCAGCGGCAGGAGGCGAGATCGCCTTTCTTTCTTCTCC
TTACCTACCTCATTGAAATC-GCCAAAATCTACGTAGGGCCCTTTCTTTGCCATTAGGGTAGTTGGTTTTTTTCTTTTCT
CTGAGACACACAACCGGTCCTTTTTTC-CTTTTTGAAAAGAAC-------TATGCGCTGCATAGATACGTACCTCATCGG
TTCAGAATTTTGAA-----------------------------------ACACACCAGCTGTCAGCGTCATTTTCATATA
TGGCAGCCGGCGCCAGCGTCTTCTGCAAGGCCTCAAGGTTCCGTTGGCTATGCTTGGTGCGC-----------CACGGCG
GTCGCCGTGTTCGCCGGCGTCCTCGTTGTCTGGGCGGTGTTCCTGCTGTTCAATCCCCTCAAGCTCCAACTCCGGATCCC
TAGCAGCTCCGTGGCGGTAAGAAGACTCTCGGAATCCGGTGACCAGCAGTACCGTTTCACCTTCTATCTCCAGGCTGCCA
ACATCAGAAATCGCACCTCCATCTACTACCACAACGTCACCATCCGGCTCGCCGACAGCCGCGAGTACCTATCCTTGCGA
CGGGAGGATCGGACCTTCATCGCTACCTTCAAGCTGACGGCGGCTAAGATATTCTTGTCTCAAGGGAAGGAGGCCGACTA
CTACCTG----------------------------------------------------------------------ACA
GCATCGAGGTGTCCATGGAGGTGGATGGCTTCCTCACCGACTATGGGCCGGGTGTGGCCCACCGCGCCACCTACATCTGC
ATTCCGCTCAAACTGGTCGGCAACTCCCGGCTGCCGTTACTGTCTGACGAGAAGAGCGCCAATTGCGCGCCTACTTACTA
ATGTGTCTTATGAT------------------------------------------------------------------
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>chr5D_744
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----------------------------------------------------------------------------TTTT
TT------------------------------------------CCTCCGAAACACACAGCCTTTTCTTTT-CTTTTCTT
TTCTTTTCGAAAAGAAAAGATAATCCTGTGCTGCACGCATGGG-------------------------------------
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-TACCCACCTCATTGAAATCAGCCAAAATCTACGTAGGGCCCTTTCTTTGCCTTTGGGGTAGTTGA-TTTTTTCTTTTCT
CTGAGGCACACAACCGGTCCTTTTTG-TCTTTTTCAAAAGAACATATATTTATGCGCTGCATAGGTACGTACCTCATGGG
TTCAGAATTTTGAAACACACTATAGCTACAAACGAACGTAACTTGATTCACACACCAGCTATCAGCGTCATTTTCATATA
TGGCAGCCCGTGCCGGCGTCTTCTGCAAGGCCTCAAGGTTCCGTTGGCTATGCTTGGTGCGCAGCGTGGTCGCCACAGCG
GTCGCCGTGTTCGCCGGCGTCCTCGTTGTCTGGGCGGTGTTCCTGCTGTTCAATCCCCTCAAGCTCCAACTCCGGATCCC
TAGCAGCTCCGTGGTGGTAAGAAGAGTCCCCGAATCCGGTGACCG---GTACCGTTTCACCTTCTTTCTCCAGGCTACCA
ACCTCAGAAATCGCACCTCCATCTACTACCACAACGTCACCATCCGGCTCGCCGACAGCCAGGAGTACCTATCCTTGCCA
CGGGAGAATCGGACCTTCATCGCTACGTTCAACCTGAG---GGCTAAGATATTCTTGTCTCAAGGGAAGGAGGCCGAATA
CTTCTTGACGGAGCCCGTAGGCATGAAGTTGAACCTGTCGTACCTCCGGAAGCTCTTCCCCAACCAAACAGGCCACAACA
CCATCGACGTGGCCATGGAGGTGGATGGCTTCCTCACCGACTACGGGCCGGGTGTGGCCCACCGCGCCACCTACATCTGC
ATCCCGCTCAAACTCATGGGCAACTCCCCGCTGTCGTCGCTGTCCGACGAGAGCAACGCCTATTGCGCGCCTACTTACTA
ATGTTTTTTTAT-GATCGATGGATGTACTCGACCCCATTGCTTGTT----------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS----------S----------------S----S---S--S-----------S-----------S---------
S---------S-----S----S-------SS----------------S------------------------SS-----S
--------SSS------S--------------S-------------S---S----S---------------S----S---
------------S-----S-S----------S-------S------------------------SSSS-S----------
----S----------------------------S-S----S---------S-------S---S--------S--SS-SSS
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S----------------------S--------
--------------------S-----------------------------------------------------------
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------------S-------------S-----------------------------------------------------
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----------------------S---------------------------------------------------------
-----------------------------------S--------------------------------------------
--------------------------------------------S-----------------------------------
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-S------S----------------------------S------------------------------------------
-S------------S------------------------------------------S----------------------
--------------------------------S-------------S---------------------------------
-------------------------------------------S------------------------------------
-------S-S--S---S------------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_62
------------------------------------------ACACCGTTGGATGTGCTTGA------------------
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>reverse_2657
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----------------GGATGGATGTACTCGACCCG--------------------------------------------
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>forward_2458
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--------------------------------------CGTACCTCCGGAAGCTCTTG----------------------
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>reverse_3712
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-------------------------------TCGCGGTTGCCATATCTCTC-----------------------------
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