>input_sequence_69031
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----------------ATGGCGCGCTTCTTCGGCCGCCTGTGGGACAGAGCTCAAGGTAACCAATCTTGTAAATTTCTTT
CTATTTTCTTGATCCATTCGTGT---------------------------GGTGTAACGGGTTGGTTGGTCGCAGGCAAG
CTGGATGTTGTAAGGATATGTGAGAAAGTGTTCGACGAACTGGCTGTCCTCAACGCCGAGAAGAACGCCAAGCTCCTGGA
CGTCAAAAATCTCCACGTCGCCACCCTCATGGTTTACAAGTGAGAAGGATACCG--CGCTCGTGTTTTAGCATCC-----
-ATCTCTTTCGCCTCATGCATCCTCTGCTCTCGTTTCCTGATTAACTAACTTTGATCTGATCCATCTCGTTGGGCGTCTC
ATCCAGCTCCATCAACAAGCAGCTGGTGGGGCCTCACAAGGACCCTCCATGCATGCAGGTCGTCAAGGGAAAAGCGGAGG
TCTCTGCTCTCTTCCTACTTCTGAAATTTC-----TATGTCCATGGCCTTCTGCTCAGCTATGGGA----GTGATTTGGT
TTT--ATATATCGACTGCAGGGGTTCCGCGACAAGGGGATAACGCAGCAGGAGTTCCGGGAGCTGATCATGGAGTGGGTG
AGGATGGACCTCCGCCTCGTCCTCGCCAACAAGGCCGCGGTGGCCGTCCTGGCGGCGCCGCTGCTCGCCGTCACGGCCAA
GAACGCCGGCAGGCAGGTGCCGAGGATGAGGGACGCGGTGGACAAGGTGCCCACGCCGCTGCTCTTCGTCGTCTTCTCCG
CCGGGCTCATGCTCCTGCAGGACATCCGGGCAGGCAAGCAGTGA------------------------------------
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>chr2A_1_TraesCS2A01G434900
GCCTTAGCCGCACGAACCGGGATAAATGCACCCATTGGTCCCGGTTCTGGACTGAACCGGGACTAATGGAGTTACCCGGC
CTGGACCAAAGCCCCCTTTTCTACTAGTGTGAGCTTTGAGCTTGAGCCAATCCTTCGTCCTTAACATTTTGAAGGGGTTC
CACATCCTATTGTCCATGCCACTCCATCTGTTGAATTTGTCTGAAATATACTAGATGAAAACATTAGTCCAACAAGAGAT
ATGTTGACATTAATTACCAAAACCACCCAGGGAGCACTTGTGCTTTCACTCGGGAAAAAGACTCTCTAGGGCAGCTGGTC
AACACGGCCGGCGGACGAACCCTAGGTACGGGCGGCGCGGTCCCCGGCGGCGGTCATGGAGGCCGACCGCCCCAGGGGCG
GCGCGCGGGTGCGGAAGCGGCGGCGGCTAGGGTTTAGAACCCGGAAACTGATACCATGTTAGAAGAGAGAGAGGGATTTG
GTGGAATAGTTCGTTGTATTGTTTGAGCCTCGTGGGCACATATATAGGAATACTTTCTACTTGAAGCACGTTACTCAACA
GGAGAGAATGGTAACTAACCTACTGTGTGAGCGTGATTCTTCCACGGGAACGGTCCAAAGTTGATTAGGATTATATTACT
TTTTGCTCAAAAGAGAAGCTACTAGGTGCAC-----------------------------------------CCTTGGTG
CTTGGATTTGGTGTTCACGCGAGGAAAAAGGTAGGAATCGAGAATTCTTTATGTTGCCGGAGGAGCAAGGCAACGCAAGG
GAAGGAAGGACTGCCGGCCCACAAATGCTCGGTCGGTGATCACCAATACGCACCCTGGTCTGCTAGCTCTAGGCTGATTC
TGACCT-----TCCCTGCAAGCCACTGCGGCTC----GACAGCCCAATCAGCAGCGGCATAAATAATTAAATATGCTGCC
TGCCATAGCTTCCT---AATTCTCTTCTCTTATCTACTTGTAGTACGTGTTCTTTGCCCTCCACCGCGGCCAGAGA---A
GGAGGAGCATCGATCCATGGCGCGCTTCTTCGGCCGCCTGTGGGACAGAGCTCAAGGTAACCAATCTTGTAAATTTCTTT
CTATTTTCTTGATCCATTCGTGT---------------------------GGTGTAACGGGTTGGTTGGTCGCAGGCAAG
CTGGATGTTGTAAGGATATGTGAGAAAGTGTTCGACGAACTGGCTGTCCTCAACGCCGAGAAGAACGCCAAGCTCCTGGA
CGTCAAAAATCTCCACGTCGCCACCCTCATGGTTTACAAGTGAGAAGGATACCG--CGCTCGTGTTTTAGCATCC-----
-ATCTCTTTCGCCTCATGCATCCTCTGCTCTCGTTTCCTGATTAACTAACTTTGATCTGATCCATCTCGTTGGGCGTCTC
ATCCAGCTCCATCAACAAGCAGCTGGTGGGGCCTCACAAGGACCCTCCATGCATGCAGGTCGTCAAGGGAAAAGCGGAGG
TCTCTGCTCTCTTCCTACTTCTGAAATTTC-----TATGTCCATGGCCTTCTGCTCAGCTATGGGA----GTGATTTGGT
TTT--ATATATCGACTGCAGGGGTTCCGCGACAAGGGGATAACGCAGCAGGAGTTCCGGGAGCTGATCATGGAGTGGGTG
AGGATGGACCTCCGCCTCGTCCTCGCCAACAAGGCCGCGGTGGCCGTCCTGGCGGCGCCGCTGCTCGCCGTCACGGCCAA
GAACGCCGGCAGGCAGGTGCCGAGGATGAGGGACGCGGTGGACAAGGTGCCCACGCCGCTGCTCTTCGTCGTCTTCTCCG
CCGGGCTCATGCTCCTGCAGGACATCCGGGCAGGCAAGCAGTGAACACCTCAACCGGTCGCCGCGTTGCCTTTTCTGATA
TATAGATGAGCAATGCGCGATGCGGCGATGTGTTTAAGATGAATGTGCACCTTTATTGGAAAATGTGTATGCATT----T
CAGGCACCTCGGTGTG-AAAATTTGTAGCCAAACAAAGTGGTAAAGGGCTGTACGTATTGGCATTCGATCTTAATATGGT
TATTATTTCTCGGCGGCTACACAACTGAATTTGTAGAAGTTCAGTGTCCCTGCGTTTGAAGGGCGGGTGCATAGTACTCC
T-------------------------------------------------------------------------------
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---------------------------------ACTCCTTAATACTTCCTCTGTTTCTTTTC--ACTCCCCATATAAGAT
TTGTTTGAACTCAAACTTTGTAAAGTTTGACCA--AATTTATATGAGAATATATCAACATCTACAATATTAAAGTAATAC
AATATATGAACATTAATTT-CACAATGCATCTAATGATATTGATTTCATATTGTGAATGTTAATA-TTTTTTCCATAAAA
TTGATTAAACTTTACGAAGTTAGACAAATGTTACTCCCTTCATCCGGAATTACTTGTCTTGGAAATGGATAAAAATGATG
TATCTAGAACTAAAATACGTCTAGATACATCCATTTCTCCGACAAGTATTTCTGGATGGAGGGAGTATATGCAGAGTAAA
AAGAAACTAATCTTCATATTGTGAAATGTTAAATACCCTACATCTTGGTGCAGGAATTTATAGTAATAA-----------
------GTAAAATATATGAGCGTAAAGCTCGTTCACATTCTTGTCATATATGAATGAAAATAGGCTTAGCCGTAAATGGA
GGCTGATTGCATGTTATATTGCATCGTGACCTTCTCGCTTTGGAAAAATGATTTGTTTCTAAAAATGTGAATTTTCAATA
AAAATCCCTCGATAAAATATATGAAAGAAGTACAAATACTTGATGATGTGGATGCTTAGACGACATTTGAGGTGAGATCG
ACTATTTATGAGATAAGTATAATTCGTGGGATCAACTATTTATGAGTACATCATAGTATTACAT
>chr2B_562
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-GAAAGAATGGTAACTAACCTACTGTGTGAGCGTGATTCTTCCACGGGAACGGTCCAAAGTTGATAAGGATTACTATTAC
TTTTGCTCAAAAGAGAGTCATTAGGATTTCTTTAGGCAAAGGTTGAGGTTTGCGTCGCGGTGTCCGTACTAGCCTTGGTG
CTTGGATTTGGTGTTCACGCGAGGAAAAAGGTAGGAATCGAGAATTCTTTATGTTGCCGGAGGAGCAAGGCAACGCAAGG
GAAGGAAGGACTGCCGGCCCACAAATGCTCAGTCAG---TAACCAATACGCAGCCTGGTCTGCTAGCT-------GATTC
TGACCTGACCTTCCCTGCAAGCCACTGCCGATC----TACAGCCCAATCAGCAGCAGCA--------TAAATATGCTGCC
TGCCATAGCCTCCTAGCAATTCTCTTCTCTTATCTACTTGTAGTACGCGTTCTTTCCCCTCCACCGCGGCCAGAGACAGA
GGAGGAGCATCGATCCATGGCGCGCTTCTTCGGCCGCCTGTGGGACAGAGCTCAAGGTAACTAATCTTGTAAATTTCTTT
CTATTTTCTTGATCCATTCGTGCGGTGCAGGCTTCGAGAGACATGCACAGGGTGTAACGTGTTGGTTGGTCGTAGGCAAG
CTGGATGTTGTGAGGATATGTGAGAAGGTGTTCGACGAACTGGCCGTCCTCAACGCCGAGAAGAACGCCAAGCTCCTGGA
CGTCAAAAATCTCCACGTCGCCACCCTCATGGTTTACAAGTGAGACGGATATATCCCGTTCGTGTTTTAGTATCGATATC
GATCTCTTTCGCCTCATGCATCCTATCCTCTCGTTTCCTAC-TAATGAACTTTGATCTGATCCGTCTCGTTGGGCATCTC
ATCCAGCTCCATCAACAAGCAGCTGGTGGGGCCTCACAAGGACCCTCCATGCATGCAGGTCGTCAAGGAGAAAGCGGAGG
TCTCTGCTCTCTTCCTATTTCTGAAATTTCTACTGTATATCCATGGCCTTCTGCTCAGCTATGGGA----ATGATTTGGT
TTTATATATATCGACTGCAGGGCTTCCGCGACAAGGGGATAACGCAGCAGGAGTTCCGGGAGCTGATCATGGAGTGGGTG
AGGATGGACCTCCGCCTCGTCCTCGCCAACAAGGCCGTGGTGGCCGTCCTGGCGGCGCCGCTGCTCGCCGTCACGGCCAA
GAAAGCCGGCAGGCAGGTGCCGAGGATGAGGGACGCGGTTGACAAGGTGCCCACGCCGCTGCTCTTCGTCGTCTTCTCCG
CCGGGCTCATGCTCCTGCAGGACATCCGGGCAGGCAAGCAGTGAACACCTTAATTGGTCGCCGCTTTGC-TTTTCTGATG
TAAAGACAGGCAATGCGTGATGTGCTTAAG------------ATGTTCACCTTTGTTGGAAATGTGTA------TCATCG
CAGGCACCTCGGTGTG-AAAATTTGTAGCCAAACAAAGTGGTAAAGGGCTGTACGTATTGGCATTCGATCTTAATATGGT
TATTATTTCTCGGCGGCTCCACAACTGAATTTGTAGAATTTCAGTGTTCCTGCATTGGAAGAGCGGGTGCATAGTACTCC
T-------------------------------------------------------------------------------
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---------------------------------ACTACTTAATACTCCCTTTGTCTCTTTTC--ACTCCG----------
-TGTTGGAAGTCAAACTAAACACTATATGAACAATAATTTATATGAAAATACATCAACATCTGCAATACTAAAGTAATAA
AATAT--GAACATTAATTTTCACAGTGCATCA----ATACTGATTTTGTATTGTAAATGTTAATA-TTTGTCTCATAAAA
CTGGTCAAACTTTACGAAGTCGGACAAATG--------------------------------------------------
----------------------------------------------------------------GTATATGCAGAGTAAA
AAAAACGAAGGGGGTAACTAGTTAATATAG----ACCCTACATCTTGATGCAGGAATTTATAGTAATAAATTTATAAACA
CTATAAGTAAAATATATGAGTGTAAAGCTCGTTCACATTCTTGTCATATACGAACGAAAGTAGGCTTAGCCACAAATGGA
GGCTGATTGCACGTTATATTGCATCGTGACCTTCTCGCCTTGGAAGAATGATTTGTTTCTAAAAA---------------
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>chr2D_562
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-GAAAGAATGGTAACTAGCCTACTGTGTGAGCGTGATTCTTCCACGGGAACGGTCCAAAGTTGATAAGGATTACTATTAC
TTTCGCTCAAAAGAGAGTCATTAGGATTTCTTTAGGCAAAGGTTGAGGTTTGCGTCACGGTGTCCGTACTAGCCTTGGTG
CTTGGATTTGGTGTTCACGCGAGGAAAAAGATAGGAATCGAGAATTCTTTATGTTGCCGGAGGAGCAAGGCAAG------
---GGAAGGACTGCCGGCCCGCAAATGCTCGGTCAG---TCACCAACACGCACCCTGGTCTGCTAGCT-------GATT-
----CTGACCTTCCCTGCAAGCCACTGCCGATCGATCGACAGCCCAATCAGCACCAGCA--------TAAATATGCTCTC
TGCCATAGCCTCCTAA----TCTCTTCTCTTATCTACTTGTAGTACGTGTTCTTTCCCCTCCACCGCGGCCAGAGA---A
GGAGGAGCATCGATCCATGGCGCGCTTCTTCGGCCGCCTGTGGGACAGAGCTCAAGGTAGCTAATCCTGTAAATTTCTTT
CTATTTTCTTGATCCATTCGTGCGGTG---------------------------TAACGGGCTGGTTGGTCGTAGGCAAG
CTGGATGTTGTGAGGATATGTGAGAAGGTGTTCGACGAACTGGCCGTCCTCAACGCCGAGAAGAACGCCAAGCTCCTGGA
CGTCAAAAATCTCCACGTCGCCACCCTCATGGTTTACAAGTGAGAAAGATACCG--CGCTCGTGTTTTAGCATCC-----
-ATCTCTTTCGCCTCATGCATCCTCTGCTCTCGTTTCCTTC-TAATTAACTCTGAACTGATCCGTCTCGTTGGGCGTCTC
ATCCAGCTCCATCAACAAGCAACTGGTGGGACCTCACAAGGACCCTCCATGCATGCAGGTCGTCAAGGAGAAAGCGGAGG
TCTCTGCTCTCTTCCTATTTCTGAAATTTCTAGTGTATATCCATGGCGTTCTGCTCAGCTATATATGGAGATGATTTGGT
TTGAG------CGACTGCAGGGCTTCCGCGACAAGGGGATAACGCAGCAGGAGTTCCGGGAGCTGATCATGGAGTGGGTG
AGGATGGACCTCCGCCTCGTCCTCGCCAACAAGGCCGCGGTGGCCGTCCTGGCGGCACCGCTGCTCGCCGTCACGGCCAA
GAACGCCGGCAGGCAGGTGCCGAGGATGAGGGACGCGGTGGATAAGGTGCCCACGCCGCTGCTCTTCGTCGTCTTCTCCG
CCGGGCTCATGCTCCTGCAGGACATCAGGGCAGGCAAGCAGTGAACACCTGAACCGGACGCGG-----------------
------TGAGCAATGC--------GCGATGTATTTAAGATGAGTGTGCACCTTTACTGGAAATTTGTA------T----G
CAGGCAGCTCGGTGTGAAAAATTTGTAGCCAAAGAAAGTGGTAAAGGGCCGTACGTAATGGCATTCAATCTTAATATGGT
TATCA------GGCGGCTCCACAACTGAATTTTTAGAATTTCAGTGTTCGTGCATTTGAAGGGCGGGTGCATAGTACTCC
T-------------------------------------------------------------------------------
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---------------------------------ACTGCTTAATACTTCCTATGTTTCTTTTC--ACTCCGCATATAAGAT
TTGTTTGAAGTCAAACTTCGTAAAGTTTAATCA--AATTTATATGAAAATATATCAACATCTACAATACTAAAGTAATAC
AATAT--GAAAATTAATTT-CACAATGGATCTAATGATAATGTT------TTGTGAATGTTAATGCTTTTTCTCATAAAA
TTGATTAAACTTTACGAAGTTTGAC-------------------------------------------------------
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>chr2B_1918
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------------------------GTAGCCAAACAAAGTGGTAAAGGGCTGTACGTATTGGCATTCGATCTTAATATGGT
TATTATTTCTCGGCGGCTCCACGACTGAATTTGTAGAATTTTAGTGCCCCTGTGTTTGAAGGGCTGGTGCATACTACGTA
CTCTCTCGGAACCATAACATAAGATGTCATTAGAAGAAGACCATAACATAAGATGTTATTAGAAGGATGAGGATTTGTGT
CTCTCGGGTGCCACACACCCCTATATGAATATAGTATTAAAAGAATACCCGAAAATTCTAAAAATAAATGGATTTTTTTG
GATATCAAACATGGGTGCCCATTCTACTCACGTGTTTAGTTTCGTGAGGAATGGGTGCCCGTGGTATTCTCGGCAAAAAA
GTCAAAAATATCATATGTATAGAAAAAAAACAGTTTGGATGCATCATACGTCGAACCATATTTTCTTCGCGACGGATACC
AAAGGCATCCATTTCTCACGAAAGTAAACGCGGGGGTAAAATGGGCACTCATGTTTGATATTTCAAAATTCCAAAATTCT
TTTAGTTTCTACTGGTACTGGGGAGTGTGGCACCTGAGAGCTCCCATGCATTTGCCATTATTACAACCAATATATATTGG
TTGTAATAACGTCTTCTATTACGAGACCGAGGGAGTACTTAATACTCCATACGTTTCTTTTTTTACTCTGCATATAAGAT
TTGTTTGAAATTAAGCTTCGTAAAGTTTGACCA--AATTTATTTGAAAATATATCAACATCTGTGATATTAAAGTAATAC
AATAT--GAAAATTATTTT-CACAATGCATCTAATGATATTGATTTTGTATTGTGAATGTTAATG-TTTTTCTCGTAAAA
TTGGTCAAACTTTAC-----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S--S-------------------------------------------------------------S-------SSS-SSS
----------------SS-SSSSS-S-SSSS-------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S-SSS-----------------------------SSSSSSS-----
----------------------------S-S------------------------S---SSSSSSSS-------------
---------S---------------------------------------------S------------------------
-------------------------------------------------------------S------------------
----------------------S-------------------------------------------------S-------
-----------S--------------S-----------------S-----------------------------------
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---------------------------------------SSS---S-----------------S----------------
--------------------------------------------------------------------SS----------
-----------------S--------------------S-------------------------------S---------
----------------------S---------------------------------------------------------
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--------------------------------------------------S-------------S----S---------S
--S--------------S----S--------S------------------------------S-SSSSSSSSSS-----S
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------------------S-------------------S-----------------------------------------
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------------------------------------S-------------S------------------S----------
---------S--------S---------------------------S---------------------------------
-----SS---------------------------------------SS-----------------------SS-------
---------------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
--S--SSS-SSSSSS-SS-S--S--SSSSSSSSS-------------S--------------------------------
--------------------S-----------------------------S---S----S-----------SS-------
-----------S--------------------------S------S-------------------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_29
---------GCACGAACCGGGATAAATGC---------------------------------------------------
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>reverse_1509
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--------------------------------------------------------------------GAAAAGCGGAGG
TCTCTGCT------------------------------------------------------------------------
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>forward_293
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---------------------------------GCACTTGTGCTTTCACTCGG---------------------------
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>reverse_1510
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---------------------------------------------------------------------AAAAGCGGAGG
TCTCTGCTC-----------------------------------------------------------------------
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>forward_1245
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-------------------------AAGTGTTCGACGAACTGGCT-----------------------------------
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>reverse_3074
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---------------------------------TACCCTACATCTTGGTGCAGG--------------------------
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