>input_sequence_69012
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----------------------------------------------------------------------------GTAT
ATAATCACCGCCGTGTGCAAAATATAGAACCAGCAAGCCAA--------AGCTTTACACAGCCTCCATTGAAGTGCAAGA
AGCAAAGCCTTAGCTTACACGTCCATCAAACACCTCAGTTCGCTACAGC---TTGGAGAGATGAACACGTTGTGCGCCAA
GCCCATGGGGTTCTCGGATGGCGTGAAGTGCCAGGGGCGGGCGAGGGTGAGGGTGTCGGCCCTGGCGGCGGCGCCGGAGA
GGGCGACGATGTACGACGTGCTGGCGGTGGGGAAGGCGGCGGGGCCGGAGGAGATCAAGGCGGCGTACAGGCGCGCCGCG
CGGCGGTGGCACCCGGACGCGTGCCCGGGCGGCGCCGACCGGTTCATGAGGGCGCGAGAGGCCTACGAGGTGCTCTCCGA
CCCCGAGCGCAGGCGGGGCTACGACATCCAGCTGCGCTGTGGCGCGGGCGCGGGCGCCGCCGGGTCCCGC------CCCG
CGCCGCGCGCGGGCTTCGCCGACTGGGAAGCACAGCTGGCCGGGCTGCAGTGGCGGATGGCGGACACGCGAGGCGAAACG
TGGGGGAGCAGGATGCGCCGCGGCGCCGCGCAGCCGCGCAGCCGACATCGTTCTAATTTCTAAACCGCAGCGCCGGCTCG
TGCTCTGTGTTTTCTACTGTAGTACAGTATATTCTACGTAGTTTCGCCTTGTTCTCTCCTTCCATTCCGTTTTACGCGGT
GGGATTCAGTTGGTGATGAAACTGTATAGTGTAGTACAGACAGTGTACAAAAGTACGGTAGTTTTTTTCTTTGAGA----
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>chr4D_1_TraesCS4D01G177300
GGTATTAGGCCCAGACTATTAGCATCCCTTCATCAACTGGATAGGAGTAGCGACAGATGTTGTCTAGACGGTGGCTTTAC
TATTACTGTTGTATCACTTTGTAAGATCTTATATGAATAATTAATAAAGTGGCTGCATGCATCGTCCAGATGCAGAGGCC
GGGGGTCCTCCTCTTTTTCTAAAAAAAGACCCTTGTTTTGCTACCATTTCGCCAAGTCCCTTAGTTAGGGTACCCTACCG
AAGGATCTGCCGGATTTAGTTTCGACAGCGGTATAATTTAAGGATTTTCTTAAATTGGTTCAATTCTGTCACAAACGTAA
ATCATGAGGGTAAACAATGGAATTAACTCTTCTAATAATGGTGTTTTGATGTGATACATCATTCGTTGGATCTATGAACG
GATAGGATAGGATTTCTAGAATTCACGCGACCCGTGGTTTTTAT--TAGTGGAGATACGCTGTGGATGCTGGTTGATGCA
CCGGTGGAGACAAATATATTTCAGCTGGCAGCGGGAGGTCGGAGGCTTACAATGCA------------------------
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------GTGGTATCGAGCTTTATCCCCGGCCAGACAACGTTTACGTGATTGGAGCAAATACAGCCGAGTCAACCAGTAAG
ATCTCCACGTTGGCAAAATCCAGAAAAACGACGTCAGTGTCTCCCTAACGCTTGGCTTCATCTGATCACATTCCGACGGG
CCACCACCATCTAGAACTACGGGTCCACATCTCAAGAGGAAGCTAAAGTCACCCCTCAAAAAAAAGAGGAAGCTAAAGTC
GAGATCGACCAGTCGACAACAACTTGACGATAATTAAGGAGTAAGATAAGATTATCACTTGAAAAAAAA--AGATTAATT
GGAGGTGGTGTAGTAATTGAGTAGCGGGCAAGAATAGATGACGCTTCCCCTGGGCGACGGGCTCATGACGCCTCACGCGT
CGCGCCCGTG--ACTTCGTCCATGTCTTCGAGAAGCCCACGCCGCCACGTTACACGTATCCCTCCCTCCCTCGGCAGTAT
ATAATCACCGCCGTGTGCAAAATATAGAACCAGCAAGCCAA--------AGCTTTACACAGCCTCCATTGAAGTGCAAGA
AGCAAAGCCTTAGCTTACACGTCCATCAAACACCTCAGTTCGCTACAGC---TTGGAGAGATGAACACGTTGTGCGCCAA
GCCCATGGGGTTCTCGGATGGCGTGAAGTGCCAGGGGCGGGCGAGGGTGAGGGTGTCGGCCCTGGCGGCGGCGCCGGAGA
GGGCGACGATGTACGACGTGCTGGCGGTGGGGAAGGCGGCGGGGCCGGAGGAGATCAAGGCGGCGTACAGGCGCGCCGCG
CGGCGGTGGCACCCGGACGCGTGCCCGGGCGGCGCCGACCGGTTCATGAGGGCGCGAGAGGCCTACGAGGTGCTCTCCGA
CCCCGAGCGCAGGCGGGGCTACGACATCCAGCTGCGCTGTGGCGCGGGCGCGGGCGCCGCCGGGTCCCGC------CCCG
CGCCGCGCGCGGGCTTCGCCGACTGGGAAGCACAGCTGGCCGGGCTGCAGTGGCGGATGGCGGACACGCGAGGCGAAACG
TGGGGGAGCAGGATGCGCCGCGGCGCCGCGCAGCCGCGCAGCCGACATCGTTCTAATTTCTAAACCGCAGCGCCGGCTCG
TGCTCTGTGTTTTCTACTGTAGTACAGTATATTCTACGTAGTTTCGCCTTGTTCTCTCCTTCCATTCCGTTTTACGCGGT
GGGATTCAGTTGGTGATGAAACTGTATAGTGTAGTACAGACAGTGTACAAAAGTACGGTAGTTTTTTTCTTTGAGAAAAA
AGTACGGTAACTATTCCGATGCTTATTACTCCTACTTAGTCGTCATGACCTTCTAAGTCGAAAAGCCGA-AAAGACAAAC
GCAAATGTCTTGTTCCGCGCTAAGAAAGTG------GGTCACTAAACCACCCCTTTTACGCATTCTAGTTCTAGAATACT
ACTCCCTGGGTAAACAAAAGCAAATGTTACACTGAAGAAAGAAAAAAGCAAATGTGGGACAACTAAAATTTCGTCCGGTA
AGCATCAAAAAAGACTTCCTTGGAAGTGACAA-ATACGACAACCTTTGAAACAGAGTCCTCCTATGGCAAATCATGCGGC
ATTCTAGAGCATCGACCAAGAAACGTTATGTATATATATAATATAATGGTGGAAGATTGGTCTATCAAACGTCACGTCTA
GGAATAACTTTTCCAATGACGTTCTATGAATGGAGCAATAGGGCAAATTTGACAAATTTGACCTATAGTCGAAATCAAAT
CACAGAATGAACTGTCCGTGAAACTATTTCACGCGGCTGACCCTTGGCGCCTAACTCTCAGGCGCTGCACTAGTGCAACG
CCCAGGAGCTAGGCGCTGCACTAGTGCAATGCCCAGGAGCCAGGCGCTACACTGTGTAGTGTGGCGCCTAGCTATCAGGC
GCTGCACGCTGACTTGGGCACATATGGGTGCGACGCTGGCCGTGTAGCGCCTATCTGTAAGACGTTGCACAGTAGGGTGT
AGCGCCGGCGTGGCGGGCGCTACACAAAAGGGTCAAGGGAGTGAAATAGTTTCGCAACCAGTTCATTTTGTGAAATGATT
TCGTCCCGAGATCAAAATTGTCAAATTTGCCGAGCAATAGCAGGATACGTTACGCTTTGGGCTCAACATCTACTAACGTT
AGCATCACCGCTGTCATCCCCATCACCACCTGTCATCCACTGCCATCGTCGTCACAGCCACCAGCAAGGGTTCCCAAACT
CCAAGAGGCAAGGGGCACAAAATGTGCACTGTCAGCCAAACCAT
>chr4B_245
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----ATCTGCCGGATTTAGTTTCCACATTGGTATAATTTAAGGATTTTCTTAAATTGGTTCGATTCTGTCACAAACGTAA
ATCATGAGGGTAAACAATGGAATTAACTCTTCTAATAATGGTGTTTTAATGTGACACATCATTCGGTGGATCTATGAACG
GATAGGATAGGATTTCTAGAATTCACGCGACCCATGGTTTTATAAGTAGTGGAGATACGCTGTGGATGCTGGTTGATGCA
CCGGTGGAGAC-AATATATTTCAGCTGGCAGCGGGAGGTCAGAGGCTTAGAGCATCTCCAGCCGTTGCCCCCAGGGCACT
GAAAAAGAGCCGCCTGGGGGCGAGTCGGCGCTAGATTGGCCCCTGGGGGTGATCTAGCTCCCAGCCACGCCCCCAGGCGC
CGCCCCCAAGTCGCAGAAAATTCAAACTTGGCCATTCCCGCTCACAAAAAATACCACAAGTCCGGCGATCAGCGGCCCAG
TTCGGCGATCATCACACCTTGCCACAGTTCGAATGAAAAGTTCGGCGTGTACAAAAAAGAAAGGGCGCGTGGGCAACGCA
TCACACGACGGAGTTGGCCTCTTGCGTTGGCGGAGTCAGTGTGCGCGGGCTTGGCGATGTTTGAGCTGCTTCTGTGCTGG
GCGGCGTCGGCGTGGCTTCTATGCTGCTGGGCGTCATGGAGGCATCATTGCTCGGGCTTGGCGGCGTCGTCGGCGTGGGC
ATGGGAGTTGGCGGTGCCGTCGACGGCAGCTGGTTCAGGATGAGGCCGCGCTCCGCCAAGTACCACGCCTTGACCTGCTC
GTCGTTGCTCTGGAGCATGTTCGCCCCGCCCATCAGGAAAGCCAGGTCGGTGTTCCTCTTCTTTGCAGCGATGTTGGTCC
GGAGTAGGTCGAGTATGACGGTGTTGTTCGTCATCAATGCCAACCACCGCGCCTTGGTCTTCTCTTCACATAGGGCGGCC
CGGGCCTGTGCGTCGGTGAGGCAATGCTCAATGGACTCCTACACTCGCGCGGTTGCCGAGTCGGCGTGTTTCCCCTTTTT
GGCCCCTTTGTTGCCTTCGAGGCGCCCGTCGCCCGCGCCTAGCGTTGGCTCGTCCGGCTTGTAGGTCTCCTTGGCCTTGG
CGAGGGTACACCGGACATCCGCCCACTTGTCGCACTTCTCGATCCATTTGAAGACGTGGAGGTACTTGAAATCATGGTCG
CTGTTGTCCTGCCGAAACATGCCGAACATCCGCACCAGCTGGGCCGAGGAACTATCAGTCAGTGGCGCGCACCCGGGGAA
AAGAAAAATGGAGAGGCCGACGTTCCATACCTGATCCTCGATGCTGGTGCCGCTTTGTGGGCGAGTCGCGATCTCCTCGA
TGATCCCATACAATTTTTTACACGTCGATTGGATGAGCCCCCAATGGTTTGCCATTGCCTTCGCCCCATGCTGCATGTAC
ACGCCTTTGAAGTAGGGGTCGACGAGCTTGCGCTCGTCAAACTCGGCCTTGATGCGGTCCCAATACGTCTCGATGCTCTG
GTTCGTGCCGGTGATCGGGTCGAGGCAGACGACTTTCCACACTTCGACGAGGCACTCGTCCTCCTTGGATGCCCACTTGA
TGTGCGGCTCGCCAGTCCTGGCCGCCCTCTTCTTTTTCTTTCGTTTCCTCGCCGAAGCAGGCGCCGACTCCTCCTCCTCC
TCCTCCTTAACTCCTACGGCTCCGGCTCCTCCTCGCCGTACTCGAGCTCGCCGTCCATGTCGCCGTTGAGGTCCATTGTG
TCGTCCTGGGTAGTAAACCCGGGGGACGCGGTGGCGGGGCCGAGCCGGCCGTGATGATGTCGTCCATGTCGTCTTCGGTC
GCGTCGGTGTCGGCAAGATGCGACGTGGAGGCTTGGGAGAAGGGCAGCGCGCCACGACGGAGAGGGGGTGTCGGGGAGGA
TGCGTACGCCGGCGGGGAGTAGTTGTACAGGGACTGTACGCCGGCGAAGGCGCGTGTGCTGGGCCGGGTGACCATGGGGA
AGATGATGTTGGGGTTGAACCCGCCGTGCGCGTCACCGTCGGCGTAGCCCGGCGACAGCGTGCAGCCCCAGGGTTGCGGT
GACGATGAGAAGCCGGCCGGAGAACCGACGCTTTGCTGGCTCCAGGGCGCGTACGGGGCGTGGCCGCCGGGCGGGTTCAT
CATCCCCACGTGAGCCGCCTCGGCTTGTTCGGCCGACCGCTCCGCCTGCTCCGCCGCCGCGGCAGCCACGAGCTGCGCCG
CGATGTCCTGGGCCTTCTTGGCGTTGGCCTTGTTCCGCCGGTCGATGGAAACAGCCTCCCGGCGCTGAACTTCCACCCTT
CAGTCGGCGTTGGACATGCCCGGGGGCTTGGACGGCGGCGCCCTCGGCTTCCTCTGCTTCGGTTGGGCGACGGCGGCAGT
CGCACCCGTCGCGGCGCGGGGGAACACGTACTTCTTCGGCGGCATGGCGGCCGGCTGGGAGGGAAGGAGGAGGAGATTGG
CGGGAGGAATGAAGAGAATGAGAGGGAAGCCCGGGGGAAAGTGGGAAGAAACGGCAGGAAAAGGCCCTCCTCTCGCCGAC
GGAGCGGCCCCACGCCTCTTTTCGGGTGCGCCAACTGTTATTTCGGCCCAACCCGACAAAAAATGGACTCCTGAAGACGC
GATTGGGCCTATTTTCGCCCGCCGGCGCTAAAAAATCGCCTGAGGGACCTGTTGGGGATGCGGCTGAAGATGCTCTTGCA
ATGCAGGTGGTATCGAGCTTTATCCCCGGCCAGACAACGTTTACGTGATTGGAGCAAATACAGCCGAGTCAACCAGTAAG
ATCTCCACGTTGGCAAAATCCAGAAAAACGACGTCGGTGTCTCCCTAACGCTTGGCTTCATCTGATCACATTCCGACGGG
CCACCACCATCTAGAACTACGGGTCCACATCTCAAGAGG------------------------------AAGCTAAAGTC
GAGATCGACCAGTCGACAACAACTTGACGGTAATTAAGCAGTAAGATAAGATTATCACTTGAAAAAAAATAAGATTAATT
AGAGGTGGTATCGTAATTGAGTAGCGGGCAAGAAGAGATGGCGCTTCCCGTGGGCGACGGGCTCATGACGCCTCACGCGT
CGCGCCCGTGTGACTTGGTCCGTGTCTTCCAGAAGCCC-------------------ATCCCTCCCTCCCTCGGCAGTAT
ATAATCACCGCCGTGTGCAAAATATAGAACCAGCAAGCCTTAGCTAGTTAGCTTTACACAGCCTCCATTGAAGTGCAAGA
ACCAAATCCTTAGCTTACACGTCCATCAAACACCTCAGTTGGCTACCATCCGTTGGAGAGATGAACACGTTGTGCGCCAA
GCCCATGGGGTTCTCTGGTGGCGTGAAGTGCCAGCGGCGGGCGCGGGTGAGGGTGTCGGCCGTGGCGGCGGCGCCGGAGA
GGGTGACGATGTACGACGTGCTGGCGGTGGGGAACGCGGCGGGGCCGGAGGAGATCAAGGCGGCGTACAGGCGCGCCGCG
CGGCGGTGGCACCCGGACGCGTGCCCGGGCGGCGCCGACCGGTTCATGAGGGCGCGCGAGGCCTACGAGGTGCTCTCCGA
CCCCGAGCGCAGGCGGGGCTACGACATCCAGCTGCGCTGTGGCGCGGGCGCGGGCGCCGCCGGGTCCCGCTCCAGCCCCG
CGCCGCGCGCGGGCTTCGCCGACTGGGAAGCACAGCTGGCCGGGCTGCAGTGGCGGATGGCGGACACGCGAGGCGAAACG
TGGGGGAGCAGGATGCGCCGCGGCGCCGCGCAGCCG--------ACATCGTTCTAATCTCTAAACCGCAGCGCCGGCTCG
TGCTCTGTGTTTTCTACTGTAGTACTGTATATTCTACGTAGTTTCGCCTTGTTCTCTCCTTCCATTCCATTTTACGCGGT
GGGATTCGGTTGGTGATGAAACTGTATAGTGTAGTACAGACAGTGTACAAAAGTACGGTAGTTTTTTTCTTTGAGAAAAA
AGTACGGTAACTATTCCGATGCTTAT------TACTTAGTCGTCATGACCTTCTATGTATAGAAAAGCCGAAAGACAAAC
GCAAATGTCTTGTTCCGCACTAAGAAAAAAAAAGAAGGTCACTAAACCACTCCTTTTACGCATTCTAGTTCTAGAATACT
ACTCCCTGGGTAAACAAAAGCAAATGTTACGCTGAAGAAAGAAAAAAGCAAATGTGGGACAACTAAAATTTCTTCCGCTA
AGCATCAAAAAAGACTTCCTTGGAAAGAGACACATACGACAACCTTTGAAACAGAGTCCTCCTATGGCAAATCATGCGAC
ATTCTAGAGCATCGACCAAGAAACGTTATGTGTATATATAATATAATGGTGGAAGATTGGTCTATCAAACGTCGCGTCTA
GGAATAACTTTTC-------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-------------------S---SS--------------------------------S------------------
-----------------------------------------------S------S----------S--------------
---------------------------------S-------SSS------------------------------------
-----------S----------------------------S--------S-SSSSS------------------------
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-----------------------------------S--------------------------------------------
---------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
-----------------------------S--------S-----------------------------------------
S--------S-S----------------------S-----S--------S------------------------------
----------------S----S-------S--------SSSSSSSSSSSSSSSSSSS-----------------------
---------------------------------------SS---------------------------------------
-S----S---------------------------------S-----SSS-------------------------------
---------------S-S----------------S--------S-----------------S------------------
---S------------------------------S---------------------------------------------
--------------------------------------------------------S-----------------------
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------------------------------------SSSSSSSS-------------S----------------------
-------------------------S------------------------------------------S-----------
-------S------------------------------------------------------------------------
--------------------------SSSSSS-----------------------S--SS-S--SSSSS-----------
------------------S--------SSS--------------------S-----------------------------
------------------------------S-----------------------------------------S----S--
-------------------------SSSSSS-----------------------------------------------S-
-------------------------------S-----------------------------------------S------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_179
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-------------------------------------------------------------------------------C
GGGGGTCCTCCTCTTTTTC-------------------------------------------------------------
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>reverse_4037
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------------------------------------CGCAGCCGACATCGTTCTAA------------------------
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>forward_3569
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-----------------------------ACACCTCAGTTCGCTACAGC-------------------------------
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>reverse_4940
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-----------------------------------------------------------AGACGTTGCACAGTAGGGTG-
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