>input_sequence_69011
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--------------------------------------------ATGATGCATGCCATGAGCTATCTTGTGGCAACGTCC
ATGGCAGTAGGATTACTCCTCGGTGCCGTCTTCCCAACAGTCAAGGCAGCTTCAGGCAATGCAACGGCGAGCCGGAACAC
GACGGCGTCGGCACTGACACCGTTCGGCACGAACCACACCGTCGGCGACGGTGCCGGGTGGCTGTTTGACGGCAAGGCGA
ATGCCTCGGCGGCCAACTACTCGGCCTGGGCAGCCAACCGCACCTTCTACCTCGGCGACTACCTC---------------
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---------AGTATGTCTTCTTTCACTGCATTTCCTTTGCCTTTCACGTGCA-GGGGCAACTCCAAATCTTCTTACGCTC
TGTTTGGAACAACTGAATTCGGTGCGGATCTAGCACGAATTTCCCACATTTCTGGGATCATGTTGGTCACATGATCATCT
CGTCGTGCATTTACAGGCTTCAGGATCCGCACGGATAACACGGTCGTGCACACGACCAACGCTACGGTATACAAGCTCTG
CGGCTACGACGGTGGCACCATCGGTGGCGGGTGGAAGGCAGAGGAGGCCTTCTTGACGGTGATGCTAGCTGCGGAGGGCG
CAAATTACTTCTTCTCGGACGCCGGCGAGGGGGAGCACTGCCGGAGGGGGATGCGGTTCGACGTCACCGTGGCGCGCGGC
CGCGGCCTCCCACAAATACCACCGTCGTACTACGAGCCGCTGTCCGGCGGGACGGCAGGGAGGGGGCCCGGCGAGGTGGT
GCCCATCTGGGTTGCTGTGAACGCTGCCTTTGCTGCTTTGCTGATGCTGTGA----------------------------
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>chr4B_1_TraesCS4B01G218400
TGGATGTCAGTTCTAGTGTAGATGACCCCAACTAATAGTCTGTGTTGGCCTGGCGAGGTTGTTCGTAATTAAGATTTCCA
GTGTAGATGACCCGTGTTGGGCCGGTGGGATTGGGGTTTAGTCCCACCTCGTCGTGTAAGGAGTGAGGCGATTGGCTTAA
ATAGGCGCGTCATCAAAGGCGATAAGCATTGGTCATCATTGCATCCTTTCTGAAGGTTATGGACTCTTTTTGCTCCATTT
CATGAAGCTTCGTTCGGCCACTAGAGCTCGTCTGACGACTAAAATCTGGTCAGACAATGTGTCGAACACATAAGGCAAGG
TGCAGTCCGATGCAAGGGTGGCGGCGGAGCTAGCAAACGTCCGGCTGGAGGAGCAAGTGGGAAGGGTAGGTCGAAGGGGA
TTTGATTCACTTTTTGTGGGGGTCGGACTGTTAGTTCCACGTGGCGGTCGCACGCGGGTCACTCCATATCCATCCCATAT
ATGGGTTGGATATGAGAGGTGCCGGTCAGTCCAGATGTTTGAGGCCGGTTTAAGGCGTCTGTCTGGGCCGCATTTTTTGA
GCAGTCAATAACTGGGGCATCGACATTTACGGGGAGTTTGAGGCGCCCGGCTGTAAATGCTCTTAATATGCAAAAGGTCC
AGGCAAGCATCAGTTATTTAATACACTACCTCGATCTATAAAAAGTTTCGCAATTTTGAGTTAACCCTTGTTTAAAAATA
GTTCAAAACTGCAGATTTATTTTGGATTGGAGGGAGTAGTTGTTTATGGATCTCATCACCGGCCATGCAGGAGTACCTAG
GCTCCTGCATTAGTAATCCCAGGACGGCGCCGACCCCGTCTGGGTGCCGCAGCATACACCGTTGACATCCGAAAAAATAA
TCATGCGCCACAATGC----TAACCATGTCAGTTTACAACCAGATTAGTACAAGACTTATCAGCAACTTAACAGTCGAGT
ATGAACATAGGCTGTAGCAGCTTAGGCATCAGCGATTTCATCCCATGATGCATGCCATGAGCTATCTTGTGGCAACGTCC
ATGGCAGTAGGATTACTCCTCGGTGCCGTCTTCCCAACAGTCAAGGCAGCTTCAGGCAATGCAACGGCGAGCCGGAACAC
GACGGCGTCGGCACTGACACCGTTCGGCACGAACCACACCGTCGGCGACGGTGCCGGGTGGCTGTTTGACGGCAAGGCGA
ATGCCTCGGCGGCCAACTACTCGGCCTGGGCAGCCAACCGCACCTTCTACCTCGGCGACTACCTC---------------
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---------AGTATGTCTTCTTTCACTGCATTTCCTTTGCCTTTCACGTGCA-GGGGCAACTCCAAATCTTCTTACGCTC
TGTTTGGAACAACTGAATTCGGTGCGGATCTAGCACGAATTTCCCACATTTCTGGGATCATGTTGGTCACATGATCATCT
CGTCGTGCATTTACAGGCTTCAGGATCCGCACGGATAACACGGTCGTGCACACGACCAACGCTACGGTATACAAGCTCTG
CGGCTACGACGGTGGCACCATCGGTGGCGGGTGGAAGGCAGAGGAGGCCTTCTTGACGGTGATGCTAGCTGCGGAGGGCG
CAAATTACTTCTTCTCGGACGCCGGCGAGGGGGAGCACTGCCGGAGGGGGATGCGGTTCGACGTCACCGTGGCGCGCGGC
CGCGGCCTCCCACAAATACCACCGTCGTACTACGAGCCGCTGTCCGGCGGGACGGCAGGGAGGGGGCCCGGCGAGGTGGT
GCCCATCTGGGTTGCTGTGAACGCTGCCTTTGCTGCTTTGCTGATGCTGTGAATGGTCTTCATTTCCATCAGGTGTTAAC
ACCGCTTTTCCCCCCGTTGAG----------------------ACGCCCGCAAGTTTTAAGTTTAGTTCTCGTACCTTGT
ACTCCCTCCGTTCCGAATTACTCCCTCCGTAAACTAATATAAGAGCGTTTAGATTATTATTTTAGTAATCTAAATACTCT
TATATTAGTTTACAAAGGGAGTACTTGTCTTGGATTTGTCTAGATACGGATGTATCTAGACTTATTTTAGTGCTAGATAC
ATCCGTATCTACACAAATCTAAGACAAGTAATTCGGAACGGAGGGAGTAAAATTTAAAATCTTAGTCGCCTATAAAGTTG
GTGGCCGAGGTCGACGACCAGAGATGGGCAT----------------CTCACGGCGCGGCGGCGGCGGATGCAGCAAGAA
GAAGACTTCAGCATCTTCAAAAATTTATATGTATTTCTACATTCTTGTAAATGTGTGTTTGTAAGGATATGTGATACTTA
ATATATG-------------------------------------------------------------------------
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--------------------------------------------------------ACCTTAGACCATTTCGC-AAAAAC
AAGTTTTGCAGCTTTAGAGTAATGTTAGTGCAAAATTTATTTCATAATGCTATAAACAAAGGTGCCTTCCCGAAGCGGTC
ACACTCACCCATGGAGGCCCGCCGACATGGGATTTGGTCACGTGTCATGTGTGTAGAGGGCATAGCCCCGGAACTTTCCT
CTCCCCCAGCCATTGCCAGCCCTAGGCTCCTCCTCTTCCCCCTTCCTGCTCATCGCCACCGCCAGATCTCATTGACGGGC
AAAGTCATATTAGCATGGGCGTCGGCGGGGTCTCTTCTTCCCCGACGTCATTGGGCGGAGACGCGGCGCAGCCGGTGATT
GCGCCGGCGGCAGCGGCCCCCTGCCTAAGGTAGCGAGCTTAGTGGTGGTGTTCTCCCCCTCGGGTCAGATCTGTTGGTGC
TTCTGCACAAGCATGACTTGCTCTATGGCGGCACGTCCTCGTCCTGCCTTTTGCGCTGATGATAGGACCTCTGCTTCCGT
GGACTGCTAGCGCGGGCCAA
>chr4D_755
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----------------------------------AGTACTTGTGTATGGATCTCATCACCGGCCATGTAGGA------AG
GTTCCTGCAGCAGTAATCCCTGGACGGCGCCGACCCGATCTGGGGGCCGCAGCATACACCGTTGACATCCCAAAAAATAA
TCATGCGCTACAATGGTAATTAACCATGTCAGTTTACAACCAGATTAGTACAAGACTTATCAGCAACTTAACAGCCGAGT
ACGAACACAGGTTTTAGCAGCTTAGGCATCAGCGATTTCCTCCCATGATGCATGCCATGAGCTATCTTGTCTCAACGTCC
ATGGCGGTAGGATTACTCCTCGGTGCCGTCTCCCCAACAGTCAAGGCAGCTTCAAGCAATGCGACGGCGAGCCGGAACAC
GACGGCGTCGGCACTGCCACCGTTCGGCACGAACCACACCGTCGGCGACGGTGCCGGGTGGTTGTTTGACGGCAAGGCGA
ATGCCTCGACGGCCAACTACTCGGCCTGGGCAGCCAACCGCACCTTCTACCTCGGCGACTACCTC---------------
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---------AGTATGTCTTCTTTCACTGCATTTCCTTTAGCTTCGGCGTGCAGGGGGCAACTCAAAATCTTATTAGTCTC
TGTTCGGAACAACTGAATTCGGTGCGAATCTAGCACGAATTGCCCTCATTTCTGGGATCATGTCGGTCACATGATCATCT
CGGTTTGCATTTACAGGCTTCAAGACCCGCACGGATAACACGGTCGTGCACACGACCAACTCTACGATATACAAGCTCTG
CGGCTACGACGGTGGCGCTATCGGTGGCGGGTGGAAGGCAGAGGAGGCCTTCTTGACAGTGATGTTAGCTGCGGAGGGCG
CAAACTACTTCTTCTCGGGCGCCGGCGAGGGGGAGCACTGCCGGAGGGGGATGCGGTTCGACGTCACCGTGGCGCGCGGC
CGCGGCCTCCCACAAATACCACCGTCGTACTACGAGCCGCTGTCCGGCGGGACGGCAGGGACGGGGCTCGGTGAGGTGGT
TCCGATGTGGGTTGCTGTGAACGTTGGCTTTGCTGTTTTGCTGATGCTGTGAATGGTCTCCATTTCCATCAGGTGTTAA-
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>chr4A_755
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----------------------------------AGTACTTGTGTATGGATCTCATCACCGGCCATGCAGGAGTACCTAG
GTTCCTGCACCAGTAATCCCAGGACGGCGCCGACCCCATCTGGGTGCCGGAGAATACACCGTTGACATCCCAAAAAATAA
TCATGCGCTACAATGGTAAT----CATGTCAGTTTACAACCAGATTAGTACAAGACTTATCAGCAACTTAGCAGTCGAGT
ACGAACACAGGTTGCAGCAGCTTAGGCATCAGCAATTTCCTCCCACGATGCATGCCATGAGCTATCTTGTAGCAACGTCC
ATGGCAGTAGGATTACTCCTCGGTGCCGTCTCCCCAACAGTCAAGGCAGCTTCAGCCAATGCGACGGCGAGCCGGAACAC
GACGGCGTCGGCACTGCCACCGTTCGGCACGAACCACACCGTCGGCGACGGTGCCGGGTGGTTGTTTGACGGCAAGGCGA
ATGCCTCGGCGGCCAACTACTCGGCCTGGGCAGCCAACCGCACCTTTTACCGCACCTTCTACCTCGGCACCTTCTCCCTC
CGTCCGCGAATAAGTGTACTTCTAGCTTTTGTCTTAAGTCAAAGTTTTAAAACTTTGACCAACCTTATGGAAAAAAGTAG
CAGCACTTATGACACTAAATTAGTATCACTAGATCTGTTTTGAAATGTATTTTCATAATATATCAATTTGATATCATATA
TGTTACTATTTTTTTTATATAGTTGGTCAAAATTTTAAAACTTTGATTTAAGACAAAAGCTAGAAGTACACTTATTCGCG
GACGGAGGGAGTATGTGTTCTTTCACTGCATTTCCTTTAGCTTTGATGTGCAGGGGGCAACTCCAAATCTTATTAGTCCC
CGTTCGGAACAACTGAATTCGGTGCGAATGTAGCAAGAATTGCCGTCGCTTTTGGGATCATGTTGGTCACATGATCATCT
CGTTTTGCATTTACAGGCTTCAGGACCCGCACGGATAACACGGTCGTGCACACGACCAACGCTACGGTATACAAGCTCTG
CGGCTACGACGGTGGTGCCATCGGTGGCGGGTGGAAGGCCGAGGAGGCCTTCTTGACGGTGATGCTAGCTGCGGAGGGCC
CAAACTACTTCTTCTCGGACGCCGGCGAGGGGGAGCACTGCCGGAGGGGGATGCGGTTCGACGTCACTGTGGCGCGCGGC
CGCGGCCTCCCACAAACACCACCGTCGTACTACGAGCCCCTGTCCGGCGGGACGGCAGGGAGGGGGCTCGGCGAGGTGGT
GCCCATGTGGGTTGCTGTGAACGTTGGCTTTGCTGTTTTGCTGATGCTGTGAATGGTCTCCATTTCCATCAGGTGTTAAT
CAGCATTCAGCAACGACACAGGGAAATTGCAACTTCTGTAGCAACGTCCGCAAGTTTTAAGATTTGTTCTCGTTGCTTGA
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------------------------------------------------AAAATTTAAAATCTTAGTCGTCTGTAAAGTTG
GTGGCCGAGGTAGAGGCTCAGAGAGACAGAGACGGCATTGAGCTATGCTCACGACGTGATGCCGGTGGATGCATCAAGAA
GAAGACTTCAGTATCTTCAAAAATTTATATGTATTTCTACTTTCTTATAAATGTGCGTTTGTAAGGACATGTGATACTTA
ATATCACTGGTGGAGAAGCCCATTCAACACCAAATTCTTTTTATACGTAAGCATGCACTTTTTCTTTACGGGAATACTTA
AGCATATACTGCTTGTTGGTTTTAGACCACAACTCGATTAGCCGAAGCAAACCTAGATGGAAGCACGCAAGTAGGCAGCT
TGGTTTCTGTACTGCCTACCACATGCACATCTCACTGTGTGGACGTACTCGAACTCACTCGCTTCTTCTGAACTGGCTCA
CTTCTGCTGAAGAACAATCGGATCGATTCTCTCGGCGGCTCGATCTTTTGATGGAACTCTCATAACTTGGCGACCAAAAA
ACAGAGAAAAAATTGCCGGTCCGTGCAACTTGCATTTTTGGGGTTCTTTCTTCCTTAACTTGTATATATATAAGAGTACA
TGACTGACTACCCGTGCCCTTTCGCAAAAAAAAGACTGACTACCCGTGCCAACGCGCCACGGACTTCACAACCAACACAA
CACGGCCCGGTGTTCGGTTTAACGCATATATGAGATGAGTATGAGGTGTGCCAGACAGCTAAATAATTTGATGGTGTGTT
ACATTGAGAAAAGGATAATCAAAAGTTGATATGTTGCTATAATTAAGGAAGACTTTCCGAAGGAGGATAGGGCACTGCCA
TTGCATGCGTCTTCTAGACGCCATTGAAAGCTTCGGTGCAGTGTGAATTGACTATTATGTTTTTGCATCAAATCTTTTTA
GTTGACAGTTCGCCACATCTTAATTTTTTTCGTCCTCCGCCTCTGCTTAATATAGAACCTTAGAACTTTTCATAAAAAAC
GAGTTTTGCAGTTTTAGAGTAATGTTAGTGCAAAATTTATTTCAAAATGCTATAAACAA---------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S----S------------------------------------
-S-------SS--------------------------S--------------------------------S---------
--------S------S----------------------------------------------------------------
-S-----S---S---------------------------S------------------------------S---------
-------------------------------S------------------------------S-----------------
----------------S--------------------------------------------S------------------
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--------------------------------------SS----S--------------------------S---SS---
----S---------------------S--------------S---S----------------------------------
---SS--------------------S------------------------------------------------------
----------------S---------------------------------------------------------------
----S---------------------------------------------------------------------------
-------------------------------------------------------------------S------------
------S----------------S--S--------S-----------------------S-------------------S
SSSSS--SSS-SS-SSSSS---------------------------S--------------S--S--------SS----S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S--S--------
-----------S--S-SS------SSSSS-S----------------------S--S-SS-S---S-------S------
-----------S----------------------------S-----S--------S-----------S------------
----SSS-------------------------------------------------------------------------
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----------------------------------------------------------------S-S----SS-------
S----------S--------------------------------S--------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_54
----------------------------------ATAGTCTGTGTTGGCCTGGC--------------------------
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>reverse_2098
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-----------------TGAGACGCCCGCAAGTTTTA-------------------------------------------
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