>input_sequence_69010
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------------ATGAGCTCGGCATCGCCATTCCCACCCCCCTCGCCG---------------TCGAGCGCGAGCGTCCC
GATGGTGGTGATCACCGTGGTGGGGATACTCGCGGCGTTCGCGCTGCTGGCGGGCTACTACGCCTTCGTCACCCGGTGCC
AGCCGCTCCGCGCGCTGCTCTCGCGCGGCGGCCCCACGACGTCGGTGAGCCCCGGCCCCTCCCCGCCGGCGGCGGCCGAC
GAGAAGCGGGGCCTCGGGCTGCCGCTCATCCGCATGCTCCCCGTCGTCCGGTTCACGGCGGCGGAGGACGCGGCGGCGCC
GAGGATCTCCGTGTCGGAGTGCGCCGTGTGCCTGAGCGAGTTCGCGGAGCGGGAGCGCGTGCGGCTGCTGCCCGGCTGCT
CCCACGCCTTCCACATCGACTGCATCGACACCTGGCTGCAGGGCAGCGCCCGGTGCCCCTTCTGCCGGAGGGACGTCACC
CTGCCGGCGCCGCACGCGCAATACCATCGGCCGCCGCCGCCCTTCCGCCGTCGGGACGAGCAGCTCCCGACCAGCGCCAC
CGGCGGCAACGA---CAACGGCGGGAGCATCGTGATCGAGGTGAGAGGGGAGCGCGAGACCTGGTCCGACGGCAGGAGGG
GCCGGAAGAAGAAGGCGGAGAGCGTGGGCGACGAGGCGGTGGACACGAGGACGAAGAAAGGGGAGTTCGCGGCGGTGCAG
CCGATGCGGCGGTCGCTCTCCATGGACTCGTGCGACGCCAAGCGGCGGCAGCTCTACCTGTCCGTCGTCCGGGAGTTCCT
CGCGCAGAGCTAG-------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G415800
TTCACGAGAAAAATAAGACTACATATCGGAGTCCGCCTACCCGCAGTCGTCGGGTGCATAACACGCCGATGAACGTTTTT
ACGGACG-CGCTAATTTTCTTTCCAGTTGCAAGGTACGGACATATGTGCTAGTAATAAGTAACAAGGGTACACGCACTAT
GTTGCACATGTTTTTTTTTGTGGGACA------------GTCTTGGTCACACTCAACAGGCGGCAGTTGAATGAAGAAAA
CCGACCGGCCCCTCTTGATGGGCCCAGCCCAACAGCCAGCAGGGGAGGCGGTGCAATGTAACGCATGTGCGTGATGTACC
GCCACTGTGCAGTGC-----------ATGGCCGTGGTGCCTCCCGAAGAGGGAGCCCGTACGGCGTTTAGAGGTAAACAG
ACAGAAAACAAGG-----------------------------------------AGCAAATCAACAAACATTGTTTTTCT
GTTTTGCCGTCGACGTATTCCCGGCTTAAATTTAGGTCGTATTTGCGTCGAAATAGGCAGCGCAGAGACAGGTGGGATGC
GTGCCCTTATCGCGTCTAGAAAAACGACCGGCCGCCACAATTTCATTGCCCTATTCAAACAGACAAAATCTAAATAAAAC
GGACGTTCGTTTAGGATTTGGGTTAGAGTTGGCCTCAGATACCGATCAGGTTTGTGTGATCTCCGGGCACGTACCAAGGT
AGAGTA--------------------------------------------------------------------------
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---------------------------------------------------------------GTACCAGACCTCTGATG
ATTAGGCAGAGGCGCCGAGGAGAAATGGAAATGGAAAACTCCGTGCCTTCCTTTTCCT---GTGAAATCCAATCCCCGCT
ACGTTATCGCTAGCGAGTCCTCTTGGCTTGAGCCTTCTCGCCTCGCCCGCTGCACCGTGCTGTTGCGCCATCGGTTGTCT
GTCAGTACTCGCTACAGAGGGCCGCTCCACGTCTCTCTCGGCCGGACGGAATCCCGCCTTCTCTTTCCGCCCTTAACTGT
AATCCGTCCATCCGTCCGTCCGTCCGTCCGACCGGCCGGATAGCGAGGCCGGCCGAGAGC-------AGCCAGCCAGCCG
GCTACCTACAAGATGAGCTCGGCATCGCCATTCCCACCCCCCTCGCCG---------------TCGAGCGCGAGCGTCCC
GATGGTGGTGATCACCGTGGTGGGGATACTCGCGGCGTTCGCGCTGCTGGCGGGCTACTACGCCTTCGTCACCCGGTGCC
AGCCGCTCCGCGCGCTGCTCTCGCGCGGCGGCCCCACGACGTCGGTGAGCCCCGGCCCCTCCCCGCCGGCGGCGGCCGAC
GAGAAGCGGGGCCTCGGGCTGCCGCTCATCCGCATGCTCCCCGTCGTCCGGTTCACGGCGGCGGAGGACGCGGCGGCGCC
GAGGATCTCCGTGTCGGAGTGCGCCGTGTGCCTGAGCGAGTTCGCGGAGCGGGAGCGCGTGCGGCTGCTGCCCGGCTGCT
CCCACGCCTTCCACATCGACTGCATCGACACCTGGCTGCAGGGCAGCGCCCGGTGCCCCTTCTGCCGGAGGGACGTCACC
CTGCCGGCGCCGCACGCGCAATACCATCGGCCGCCGCCGCCCTTCCGCCGTCGGGACGAGCAGCTCCCGACCAGCGCCAC
CGGCGGCAACGA---CAACGGCGGGAGCATCGTGATCGAGGTGAGAGGGGAGCGCGAGACCTGGTCCGACGGCAGGAGGG
GCCGGAAGAAGAAGGCGGAGAGCGTGGGCGACGAGGCGGTGGACACGAGGACGAAGAAAGGGGAGTTCGCGGCGGTGCAG
CCGATGCGGCGGTCGCTCTCCATGGACTCGTGCGACGCCAAGCGGCGGCAGCTCTACCTGTCCGTCGTCCGGGAGTTCCT
CGCGCAGAGCTAGGCAGGCGTCGTCGTAGCAGCGGTGGTGGTAGTACATTCATCATACATACAGTACCATTCTTTCTTCG
AC-----CGATCGATTGTAGTAGTACATTAGCCTCCGTACGTTGCTGTAGCGGTGGTACGCGTAGCGTACGTAGGCACGT
GTAAATTCACTCCTCGACCGCGGCTAGATGCATGGC----------ATGGCGGTCGTCTCTAATTT-TTTGTGGGCAGTC
CATATGTACAAGGGCAATTAAGCAAGTGTTTCCTCCGTTTCATAATATAAAAGTGTTACTAGTGTCGAGAGCACATCTGT
ATTATGAAACAGAGAGAGTAGTAGTGAGTAAGTTATAGTAGAAGCAACAACCTTGCAGACATTTGGTAACGGTATTTTAA
AAACAACAAAAAACATGTTTAGACGTTTCGGAAAAATCTAGAAAAAAATCCATGGAAACATATATGTGTTCCGCACGAAC
GTGTGAAATTTCGTTTAATGATACTGCGATCTGTAGGTTGTAAAAAGGGAAACATTTCCGGGCCAACAACAAAACTAAAG
GGCCTAATTTGAATATACGTACTTCTGCATGCCCTATGTGGAAGTATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGTTCATAAAATAATCAATTTTTTCACACTGGAAAGTTGAATTTTGAAGATGAGCTCCGTGTAG
>chr4B_53
----------------------------------------------------GGTGTATAACACGCCGGGTGAATATTTT
GATGGACACGCTAATTTTCTTCCCTGTTGCAACGCACGGGCATATGTGATAGTAATAAATAACAAAGGTACATGCACACT
GTTGCACATGTATATATATTTTTAGCACTTGTTGCACATGTATTGGTCTCACTCAACAGGCGGCAGTTGAA----GAAAA
CAGGTCGTCCCCTCTCGACGGGCCCAGCCTAGCAGCCAGCGGGGGAGGCGGTGTAATGTAACGCATGTGAGTGATGTACC
GCCAGTGTGCAGTGCAGGTAGCGTAAATGGCCGTGGTGCCTCCCGAAGAGGGAGCCCGTACAACGTACGAACCTTCCCTC
CCTCGGTGTAACAGTTGAGCTCGTCCTGTTACTAGGGGAATTTGGCCACTACTAAGCACATGCAGTGACTTCTTTTTTTT
TTTTTTGAGAATCAGCACATGCAATGACTGTG------------------------------------------------
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----------------------------------------------CAGCTTTGTGTGCGCATGGGTCGAAATTAGTCAC
CTGCCGTGCCCGGACCCAACATCGAAAGCACGGGGTCTTTCTCCTGCGCCTGATTGTCAACCCAAAAAACAACTCCCTTG
GACAAATTGGTCACGCGATCTCTGCCTCTGTGGTTAGTGGTTACCCGTGTGCACGTACTGCATACGGCGCGTACGGCACT
TGTGCTGTACAAAATGCGCTGCTTTTTTCTTTCGCCAACTGCCAGTGCCAGCCAGCCATATAAACGCGAGACTGCAAGGG
TCGCTCGTGCCGTGCGAGCGCGAGCGTTCAGTCTCGACGACGCCGCTGTGCATCCCCAGACACGTGCCAAACCTCTGATG
ATTAGGCAGAGGCGCTGAGGA------GAAATGGAAAACTCCGTGCCTTCCTTTTCCTCCTGTGAAACCCAATCCC----
-------CGCTAGCGAGTCCTCTTGGCTTCAGCCTTCTCGCTCCGCTCGCTGCACCCAGCTGTTGCGCCATCGGTTGTCT
GTCAGTGCTCGGTACAGAGAGCCGCTCCACGTCTCTCTCG---------------GCCTTCTCTTTCCGCCTTTAACTGT
A-------------------------TCCGTCCGACCGGATAGCGAGGCCGGGCGAGAGCGCGCGCAAGCCAGCCAGCCA
GCTACCTACAAGATGAGCTCGGCATCGCCATTCCCACCCCCCTCGCCGCCGCCGCCGTCG---TCGAGCGCTAGCGTCCC
GATGGTGATGATCACCGTGGTGGGCATACTCGCGGCGTTCGCGCTGCTGGCGGGCTACTACGCGTTCGTCACCAGGTGCC
AGCCGCTCCGCGCGCTGCTCTCGCGCGGCGGCCCGG---CGTCGGTGACCCCCGGCACTTCCCCGCCCGCGGTGGCCGAG
GAGAAGCGAGGCCTCGGGCTGCCGCTCATCCGCATGCTCCCGGTCGTCAGGTTCACGGCGGCGGAGGACGCGATGGCGCC
GAGGATATCCGTGTCGGAGTGCGCCGTCTGCCTGAGCGAGTTCGCGGAGCGGGAGCGCGTGCGCCTGCTGCCCGGCTGCT
CCCACGCCTTCCACATCGACTGCATCGACACCTGGCTGCAGGGCAGCGCCCGGTGCCCCTTCTGCCGGAGGGACGTCACC
CTGCCGGCCCCGCACCCGCAATACCATCGGCGGCCGCCGTCCTTTCGCCGTCGGGACGAGCAGCTCCCGACCAGCGGCAA
CGACG---ACGA---CGGCGGCGCCAGCATCGTGATCGAGGTGAGAGGGCAGCGCGAGACCTGGTCCGACGGCAGGAGGG
GCCGGAAGAAGAAGGCGGAGAGCGTGGGCGACGAGGCGGTGGACACGAGG---AAGAATGGGGAGTTCGCGGCGGTGCAG
CCGATGCGGCGGTCGCTCTCCATGGACTCGTGCGACGCCAAGCAGCGGCAGCTCTACGTGTCCGTCGTCCGGGAGTTCCT
CGAGCAGAGATAGGCGAGTGCCACAGTATGACA-------GTAGTACATTCA------------TACCATTCTTTCTTCG
ATTCGATCGATCGATT------GTACATTGGCCTTCGTACGTTGCTGTAGCGGTGGTAGGCCTACGTACATACGT-ACGT
GTAAATCCGCTCCTCGACCGCGTCTAGATGCATGGCATGGCATGGCATGGCGGTCGACTCTAATTT-TTTGTAGGCAGTC
CATATGTACGCTGGCAATTAAGCAAGT-----------------------------------------------------
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>chr4D_793
TCGCT---------------------------------------------------------------------------
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-------------------------------------------CGCTCGCGGCACCGTGCTGTTGCGCCATCGGTTGTCT
GTCAGTACTCGGTGCAGAGAGCCGCTCCACGTCTCCCTCG---------------GCCTTCTCTTTCCGCCTTTAACTGT
A-------------------------TCCGTCCGACCGGATAGCGAGGCCGGGCGAGAGCGCGCGCAAGCCAGCCAGCCA
GCTACCTACAAGATGAGCTCGGCATCGCCATTCCCGCCACCCTCGCCGCCGCCGCCGTCGTCGTCGAGCGCGAGCGTCCC
GATGGTGGTGATCACCGTGGTGGGGATACTCGCGGCGTTCGCGCTGCTGGCGGGCTACTACGCGTTCGTCACCAGGTGCC
AGCCGCTCCGCGCGCTGCTCTCGCGCGGCGGCCCGG---CGACGGTGAGCCCCGGCGCCGCCCCGCTGGCGGCGGCCGAG
GAGAAGCGGGGCCTCGGGCTGCCGCTCATCCGCATGCTCCCCGTCGTCAGGTTCACGGCGGCGGAGGACGCGATGGCGCC
GAGGATCTCCGTGTCGGAGTGCGCCGTGTGCCTGAGCGACTTCGCGGAGCGGGAGCGCGTCCGGCTGCTGCCCGGCTGCT
CCCACGCCTTCCACATCGACTGCATCGACACCTGGCTGCAGGGCAGCGCCCGGTGCCCCTTCTGCCGGAGGGACGTCACC
CTGCCGGCCCCGCACCCGCACTACCATCGGCCGCCGCCGGCCTTTTGCCGTCGGGACGAGCAGCTCCCGACCAGCGGCAA
CGACG---ACGGCGGCGGCGGCGGCAGCATCGTGATCGAGGTCAGAGGGGAGCGCGAGACCTGGTCCGACGGCAGGAGGG
GCCGGAAGAAGAAGGCGGAGAGCGTGGGCGACGAGGCCGTGGGCACGAGG---AAGAACGAGGAGTTCGCGGCGGTGCAG
CCGATGCGGCGGTCGCTCTCCATGGACTCGTGCGACGCCAAGCAGCGGCAGCTCTACGTGTCCGTCGTCCGGGAGTTCCT
CGAGCAGAGCTAGGCGAGTGCCACAGTATGACA-------GTAGTACATTCA------------TACCATTCTTTCTTCG
ATTCGATCGATCGATT------GTACATTGGCCTTCGTACGTTGCTGTAGCGGTGGTAGGCCTACGTACGTACGTAC---
GTAAATCCGCTCCTCGACCGCGTCTAGATGCATGGCATGG----------CGGTCGACTCTAATTTTTTTGTAGGCAGTC
CATATGTACGCTGGCAATTAAGCAAGT-----------------------------------------------------
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>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-----------SSSS-SSS----
SSS-SSS--------------S--S-------S-S----S--------S---------S------S------S----SS-
-----------S-S-S-S-S-SSSS----------------S------S----------------------SSSS-----
-S-SS--S-------S--S----------S-S--------S------------S---------------S----------
----S--------------------------------------------------------SS---SSSS-SS-SSS-SS
S-SSSSSSS--SS---------------------------------------------S--SS-SSS--S-SS-----S-
S----SSS-SSSSS-S-SSSS-SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------SS-SSS--S-SSSSSSSSSSSS
SSSSSS--------------------------------------------------------------------------
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-----------------------------------------------------------------S---S----------
---------------S-----SSSSSS----------------------------------------S--------SSSS
SSSSSSS----------------------S-----------SS---S---------------------------------
-----------S-------S--------------------SSSSSSSSSSSSSSS----------------S--------
-SSSSSSSSSSSSSSSSSSSSSSSSS----S---S-----------------S--------------------------S
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---------------------------------------------------------------S---------S------
----------------------------------SSSSS-----------------S----------------------S
------------------------------------------------S-----------------------SS------
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--------S------S-----------------------S----S-------------------------------S--S
--S--SSS--------SS------S-------------------------------------------------------
--------------------------------------------------SSS-----S---------------------
-------------------------------------------S-------------S----------------------
--S------------SS-S-S-SSS---SS-SSSSSSSSS------------SSSSSSSSSSSS----------------
-S--------------SSSSSS-------S----S-----------------------S--S--SSSSSSSSS-SS----
------S-S-------------S---------------------------------S---------------S-------
---------SSS---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_724
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----------------------------------------------------------------GGGCACGTACCAAGGT
AGAG----------------------------------------------------------------------------
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>reverse_2631
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----------------------------------------------------------------------CCGCACGAAC
GTGTGAAATT----------------------------------------------------------------------
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