>input_sequence_69004
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----------------------------------------------------------ATGGATGCCAAGAAGTTCCTGC
AGATGGTCGAAGACAAGAAGAAGAGACTCCTTGAGAAGAAGGAAGCCCCACTGAAATGGCAGCAGAAACTGGAAGCGGCA
ATTAAGGCCACTGAAGAGAAGGAGAAGAAGCTCAAGTCAAAAAAGCACAGGAGGCGAAGCTATTCTTCCTCAGAGTCTGA
CAGTGAATCCGAGAGCGACAGTGATCGGAAACACAGGAAGAGGAAGGACCGCAAAAGGCACAGGAAACATGGCCACTCTG
ACTCTGATGGTGCCAGGAGGCGCAAGCACAGGTCAAAGAGGAGGAGCTTGGACTCTAGTGATGAGAGCGACAGTGATGAA
TATGATAGCGAATCTGAAGAAGAGCGCCCAAGGAAGAAGCACTCGCACAGGAGGAAGCATCACCGACACTCTCCAAGGTC
AGAGTCTGATGCTTCAGATTACAGCAGCGATGATGATGAGCGGAGATCAACCAGGAAGGACCACACAAGGAGCCGCAGGC
GTCGCCACCGATCATTAGACGATGAATCTGAGGACAAGATCAGGTCGAGGCATAGGAAGCGT---CACAGATCAAGTGAC
GAGGACAAGCCATCAGATTCTGACATCCATAAGCGTCACAGGAGCCGCTCTATGTCCTTGGATGATGGTGCTGCTGGTGA
GCCAGACAAGATGAATGATGGTAAGGGGTCTCACAAAAGCCGGCACCACCGCCGCCATCACCATCACCATCATGATCACC
ATGGCAACTCTGCTGAACCCAGTGACGGGAAGCAACTCGTGTAA------------------------------------
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>chr3D_1_TraesCS3D01G021200
TGTTTGAACTGCTGGCAAAAGCTTGGATTGTAGTTCTCTTGTGTGGTCTTCGAGAATAAGCTATATATAGGGAAAAAAAG
ATTTATAGCTTCCTTCGAGATTTCTGAACTTCAAAGGTTAAGAATTGGAATCGCGTTCAAGTTTAAACTGACGCGATAGA
AAGCATT----ATTCTATAGACCAGTAACTACTAACAAGCTTCATCACATATAGGTC--ACTTGTTATTCTTGTGAGTTG
TTACTAGAGACGCAGAACAAAATTTGGCTCACATATTTCTGTCTGCTCTGAATGTTTAGCAGTTTTGAACCTTTAAGCTA
TTGTTTTGATATT-AAGTGGATAACATGAATAAGTTTGGTACTATTTTGGCGTTGCCTTAGGTTTAAACGAGTCTCACTT
TCTCATGGTCACTTGTATTTGCCGATTTCAGGCATTTT-CTTCTGGGAAACAAAATATCA-----GTAGTCCCTTGATTT
CTTTCCTTTTACAGTTTCATAACTGGGATTACATTCGAATTTTAAACTGATGCACTATATGCGTAAAAATCAACAGACCT
TGTCACATGTGTCAGGTTAATTAGTTTGTTTGTGTATAGTTACCACATCAGTATATGTTTTTGGTAGGATCTGAATGGTT
AGCGCAGTTTGGAACCTTTAAGCTACTGTTTTGGTGTTAAGCGGATGTCATGTATCAGTTTAGTGCTACTCTGGTGTTAA
TATTTTCTTAGACATGCCACACTCTGTAAAGTATTTGTTGGTTGCAAGGATTTAGCTTCACTATGCTTTGAAATGTCTGA
TATTAGATATCATTTGGTTGCCAAAATATC---TTTGTTTCAGTTGTCTAAAGCTATTGC-TCTACTTACTGATTTGATT
TACACACTTCTTCTCTAGCATGCTGGATAATCCTAGATGTTCAGTAAACTAACAGTGTTTT-CTCTCTTCTATGAGATGC
ACTTCCTTGCATCATTTCACGGCCCTGCAGGTTTTGAGCTTTTGTCTGTTTCCCTGGGATGGATGCCAAGAAGTTCCTGC
AGATGGTCGAAGACAAGAAGAAGAGACTCCTTGAGAAGAAGGAAGCCCCACTGAAATGGCAGCAGAAACTGGAAGCGGCA
ATTAAGGCCACTGAAGAGAAGGAGAAGAAGCTCAAGTCAAAAAAGCACAGGAGGCGAAGCTATTCTTCCTCAGAGTCTGA
CAGTGAATCCGAGAGCGACAGTGATCGGAAACACAGGAAGAGGAAGGACCGCAAAAGGCACAGGAAACATGGCCACTCTG
ACTCTGATGGTGCCAGGAGGCGCAAGCACAGGTCAAAGAGGAGGAGCTTGGACTCTAGTGATGAGAGCGACAGTGATGAA
TATGATAGCGAATCTGAAGAAGAGCGCCCAAGGAAGAAGCACTCGCACAGGAGGAAGCATCACCGACACTCTCCAAGGTC
AGAGTCTGATGCTTCAGATTACAGCAGCGATGATGATGAGCGGAGATCAACCAGGAAGGACCACACAAGGAGCCGCAGGC
GTCGCCACCGATCATTAGACGATGAATCTGAGGACAAGATCAGGTCGAGGCATAGGAAGCGT---CACAGATCAAGTGAC
GAGGACAAGCCATCAGATTCTGACATCCATAAGCGTCACAGGAGCCGCTCTATGTCCTTGGATGATGGTGCTGCTGGTGA
GCCAGACAAGATGAATGATGGTAAGGGGTCTCACAAAAGCCGGCACCACCGCCGCCATCACCATCACCATCATGATCACC
ATGGCAACTCTGCTGAACCCAGTGACGGGAAGCAACTCGTGTAAGTTGTTAA--TGCCTCAGAACCTGATTGGCGTCATC
ACTGGGCTCTGTGACGGGAAGGT----TTGCCCCAGTTGGCTAGTTGCTGAATGAAAGC-ATGTATCTTTCATAATGTTA
CTGTCTC-GGCTCTGCTGCGAC-TTCTGAAGCCTGTACTTGTTGTACTGAAAAATTTGGCGACACCAGATGTTATTTCCA
GCATTTCCTCTGTTGAGACATGGCTTGGTTGCTGATTTGGTGGTTAAACATGCCTGTTTCATTTGCTGCAAGTTCACTTG
TGCATTTTCGTTTATTCAGCCATACTACGTTTGGATCATATGTTGCTAAGTC--CACATTTTTTGCGGCGTACTTGCCAT
GCGTACACA-TTTTTTGTGGGATACAAGCATTCTGTGGCGGTGCAGCAGAAAAGTACGAAACAC--TGTTTGGGTTGGGG
CTAGAGCTTTTCTGTTTGAATGCTTGCCATGCTTTGTTTGAACGACGATTGTATGAACAAACAACAAAACTACTGTGTGG
ACGACGATGATGGAGGATTGAACGGTGCATAATTTTACAGCTTATGTTCTGCACAGTTAGAAAATCATTAAGAATTTGTT
CTGGTCATAGCAGCGTTCAACACACAATGGACGACAATGATGGAGGATTGAACTGTGCACATTTTTCCGGCTTGATGTTC
TTCACTGTTAGAAAACCATTAAGAATTTGTTGTGGGCATAGGAGCGTTCAACAAACAATTAGACCGACAACAACCCTAGC
GTTTGTACCAAATATAAATTCCGCTCCCCTTCCCACACCAAAAACCATTTGATGTGGCATCCCTAGATCACCTTCATATT
TGGAACAGTGTGGTTTTACGTCTACTCAATGTGCGTACCTGTTATAATCAATCATATGAGCAAGTGATATAAGAGTGACA
TATCCACACCTATAAACAACCTTTTTTACAGAAGAAAGAAAAGACTACAAACAACACATCCTGTTAGTACACAAAAGATG
CCTTCAATTGATATCATA
>chr3B_1
TGTTTGAACTGCTGGCGAAAGATTGGATTGTTGTTCTGCTGTGTGGTCTTTGAGAATAAGATATGGCGAAAAAAAAAAAG
ATTCTTAGCTTCCTTTAAGATCTCCAAACTTTGAAGGTTAAGAACTGGAATCTCATTCAAGTTTAAACTGACGTGATAGT
AAGAAGGCCTCATTCCATGGACCAGTAACCACTAGCAAGCTTCATCACGTAATAGGTTTACTTGTTATTATTGTGAGTTG
TTACTAGGGACGCAGAATAAAATTTGGCTCACATATTTCTGTATGCTCTGAATGTTTAACAGTTATGAATCTTTAAGCTA
CTGTTTTGACATTAAAGTGGATTACATGAATCAGTTTGGTACTATCTTGGTGTTGCCTTCGGTTTAAACGACTCTCACTT
TCTCATGGTCACCTGTGTTTGCTGATTTTAAGCATTTTGCTTCAGGGAAAGAAAATATTTGTAGTGTAGTCCCTTAATTT
ATTTCCTTTTACAGTCTGAGAATTGGGATTACATTCGAATTTTAAACTGATGCAAC-TATGCGTAACAATCAACAGACCT
TGCCACATGTGTCAGGTTAATTAGTTTGTTTGTGTATAGTTACCAGAGCAGTATATGTTTTTGGTAGGATCTGAATGCTT
AGC--AGTTTGGAACCTTTAAGCTACTGTTTTGGGGTGAAGCGGATACCATGTATCAGTTTAGTGCTACTTTGGTGTTAA
TCTTTTCTTAGACATGCGAAGCTCTGTCCAGTGTTTGTTGCTTGTAAGGA-TTAGCTTCACTATGCTTTGAAATGCCTGA
TATTAAATGTCACTTGGTTGCCAAAATATAGTATTTGTTTGAGTTGCCTAAAGCTATTTGTTCTACTTACTGATTTGATT
TACGCACTTCTTCTCTAGCATGCTAGATAATCCTAGATGTTCAGTAAACTAACAGTGTTTTTCTCTCTTCTATGAGATGC
ACTTCCTTGCATCATTTCACGGCCCTGCAGGTTTTGAGCTTTTGTCTGTTTCGCTGGGATGGATGCCAAGAAGTTCCTGC
AGATGGTCGAAGACAAGAAGAAGAGACTCCTCGAGAAGAAGGAAGCCCCTCTGAAATGGCAGCAGAAACTGGAAGCAGCA
ATCAAGGCCACTGAAGAAAAGGAGAAGAAGCTCAAGTCGAAAAAGCACAGGAGACGAAGCTATTCTTCCTCAGAATCTGA
CAGTGAATCCGAGAGCGACAGTGATCGGAAACACAGGAAGAGGAAGGACCGCAAAAGGCACAAAAGACATGGCCATTCTG
ACTCTGATGGTGCCAGGAGGCGCAAGCACAGGTCAAAGAGGAGGAGCTCGGGCTCTAGCGACGAGAGCGACAGTGATGAA
TATGATGGCGAATCTGAAGAAGAGCGCCGAAGGAAGAAGCACTCGCACAGGAGGAAGCATCGCCGACACTCTTCAAGGTC
AGAGTCTGACGCCTCAGATTACAGCAGTGATGATGATGAGCGAAGGTCAACCAGGAAGGACCATTCTAGGAGCCGGAGGC
GTCGCCACCGGTCCTCAGACGATGAATCTGAGGAGAAGATCAGGTCGAGGCATAGGAAGCGTCATCACAGATCAAGTGAC
GAGGACAAGCCGTCAGATTCTGACAACCATAAGCGCCACAGGAGCCGCTCTATGTCCTTGGATGATGGTGCTGCTGGTGA
GCCAGACAAGATGAATGATGGCAAGGGGTCTCACAAAAGCCGGCATCACCGCCGCCACCACC---ACCATCATGATCATC
GTGTGAACTCTGCTGAACCCAGTGACGGGAAGCAACTCGTGTAAGTTGTTAAAATGCCTCAGAACCTGATTGGCATTTTC
ACTGGACTCTGTGACGGCAATGTTTGCTTGCCCCAGTTGGCTAGTTGCTGAATGGAAGCGATGTATCTTTCATAATGTTA
CTGTCTCCGGCTCTGCTGCGGA-TTCTGAAGCCTTTACTTGTTCTACTGAAACGTTTGGCGACACTAGATGTTATTTCCA
GCGTTTCCTCTGTTGACATATGT-TTGCTTGCTGATTTGGTGGTTAAACATGCCTGTTTCATTTGCTGCAAGTTCACTAT
TGCATTTTCGTTTATTGAGACATACTACGTTTGGATCATA----------------------------------------
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>chr3A_299
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----------------------------------------------------------------TTGAACCTTTAAGCTA
CTGTTTTGATACT-AAGTGGATTACAGGAATCAGTTTGGTACTATTTCTGTGTAGCCTTAGCTTTAAACGAGTCTCACTT
TCTTATGGTCACTTGTATTTGCCGATTTCAAGCATTTT-CTTCAGGGAAAGAAAATATCAC-----TAGTCCCTTGATTT
CTTCCCTTTTACAGTTTGAGAATTGGGATTACATTCGAATTTTAAACTGATGCAAC-TATGCGTAATAATCAACAGACCT
TGTCACATGTGTCATGTTAATTAGTC--------------------AGCAGTATATGTTTTTGGTAGGATCTGAATGGTT
AGCGCAGTTTGGAACCTTTAAGCTACTGTTTTGGTGTTAAGCGGATGTCATGTATCAGTTTAGTGCTACTCTGGTGTTAA
TCTTTTCTTAGACATGCCACATTCTGTAAAGTATTTGTTGGTTGTAAGGATTTAGCTTCACTATGCTTTGAAATGCCTGA
TATTAGATGTCATTTGGTTGCC-AAATATC---TTTGTTTCAGTTGTCTAAAGCTATTGC-TCTGCTTACTGATTTGATT
TACACACTTCTTCTCTAGCTTGCTAGATAATCCTAGATGTTCAGTAAACTAACAGTGTTTTTCTCTCTTCTATGAGATGC
ACTTCCTTGCATCATTTCACGGCCCTGCAGGTTTTGAGCTTTTGTCTGTTTCGCTGGGATGGATGCCAAGAAGTTCCTGC
AGATGGTCGAAGACAAGAAGAAGAGACTCCTCGAGAAGAAGGAAGCCCCACTGAAATGGCAGCAGAAACTGGAAGCGGCA
ATTAAGGCCACTGAAGAGAAGGAGAAGAAGCTCAAGTCAAAAAAGCACAGGAGGCGAAGCTATTCTTCCTCAGAATCTGA
CAGTGAATCCGAGAGCGACAGCGATCGGAAACACAGGAAGAGGAAGGACCGCAGAAGGCACAGGAAACATGGCCACTCTG
ACTCTGATGGTGCCAGGAGGCGCAAGCACAGGTCAAAGAGGAGGAGCTCAGACTCTAGCGATGAGAGCGACAGTGATGAA
TATGATAGCGAATCTGAAGAAGAGCGCCGAAGGAAGAAGCACTCGCACAGGAGGAAGCATCGCCGTCACTCTTCAAGGTC
AGAGTCTGATGCTTCAGATTACAGCAGCGATGATGATGAGCGAAGGTCAACCAGGAAGGACCACACTAGGAGCCGGAGGC
GCCGCCACCGATCATCAGACGATGAATCCGAGGACAAGATCAGGTCAAGGCATAGGAAGCGC---CACAGATCAAGTGAC
GAGGACAAGCCATCAGATTCTGACAACCATAAGCGCCACAGGAGCCGCTCTCTGTCCTTGGATGATGGAGCTGCCGGTGA
GCCAGACAAGATGAATGATGGCAAGGGGTCTCACAAAAGCAGACACCCCCGCCGCCACCACCATCACCATCATGATCACC
ATGCCAACTTTGCTGAACCCAGTGACGGGAAGCAACTCGTGTAAGTTGCT--AATGCCTCAGAACCTGATTGGCATCTTC
ACTGGACTCTGTGACGGCAATGTTTGCTTGCCCCAGTTGGCCAGTTGCTGAATGAAGGCGATGTATCTTTCATAATGTTA
CTGTCTC-GGCTCTGCTGCGGCTTTCTGAAGCCTGTACTTGTTGTACCGAAACATTTGGCGAAACCAGATGTTATTTCCA
GCGTTTCCTCTGTTGTCATATGT-TTGCTTGCTGATTTGGTGGTTAAACATGCCTGTTTCATTTGCTGCAAGTTCACTAT
TGCATTTTTGTTTGTTGAGCCATACTACGG-TGGATCATATGCTGCTATGTCTACACATTTTTTGCGGGATACTAGCTAC
GCGTACACATTTTTTTGTGGGATACAAGCATTCTGTGGCGGTGCAGCAGAGAACTATGAAACACTATGTTTCAGTTGGGG
CTAGAGCTTTTCTGTTTGATTGTTTGAATGCTT-----------------------------------------------
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>SNPs
----------------S----S---------S-----SS-----------S---------S---SSSS-SSS--------
---SS----------SS----S--SS-----SS-----------S-------S-S------------------S-----S
---S-SS--------S--S----------S----S-------------S--SSS-SS------------S----------
-------S---------S------------------------S---------------S---------------------
S---------------------S--------S------------------S-----------------------------
------------------------------S------------S------S-----------------------------
-----------------S-S--S-------------------------------SSS---------S-------------
---------------------------------------------S-S--------------------------------
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-S------------------------------------------S------------------------------S----
--------S-----------------------------------------------------------------------
------------------------S-------------------------------------------------------
----------------------------------------------------S---------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------S-----
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------------------------------------------------S---------S---------------------
----------------------------S--------------------------------S----------S-------
------------------------------------------S--S--------------------S--------S----
---------------S----------------------------------------------------------------
-------------------------S---------S--------------------------------------------
---------------------S-----------------------------------S----------------------
---S----------------------------------------------------------------------S--S--
-----S-----------S--S-----------------------------------------------------------
--------------------S-------------------------------S---------------------------
--S-------------S-S---SS---S--------------------------------------------------SS
----------------S-------------------------S-----S-------------------SS----S--S-S
--------------------------------------------------S--S--S--------------SS-------
-------------------S--S---SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_22
-GTTTGAACTGCTGGCAAAAGC----------------------------------------------------------
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>reverse_1626
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-------------------------TCCATAAGCGTCACAGGAGC-----------------------------------
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>forward_1486
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--------------------------GCGATGATGATGAGCGGAGA----------------------------------
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>reverse_2452
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---------------------------------------------------ACTGTGCACATTTTTCCGGC---------
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