>input_sequence_68999
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---ATGGCAACGGCAACGGCAACGGCGCCGCGGCGGAGGGCAAGCATGGGGCGGCAGAAGATCGAGATCCGGAAGATCGA
GAGCGAGGAGGCGCGGCAGGTGTGCTTCTCCAAGCGCCGGGCGGGGCTGTTCAAGAAGGCGAGCGAGCTGGCCGTGCTGT
GCGGCGCCGAGGTTGCTGCCGTCGTCTTCTCCCCCGCAGGCAAGGCCTTCTCCTTCGGCCACCCCTCCGTCGAGGCCATC
CTCGACCGCTTCGTCCCCTCCGCGGCGCAGCATCCCGGGGTGGTGGTGGCCGGCGCGGGCCTAGGCGCCGCTGGTGACCG
CAACCTGGCGGAGCTGAACCGGCAGTACGGCGAGCTGCGCACGCAGCTGGAGGCCGAGAAGGCGCGCAAGGAGCGCGCCG
AGGAGGCCATGGCAAAGGAGCGCGCCGCGGGCAACCAGATGGCGGCGTGGCTCGACGCCGACCTGCGCGACATGGGGGAG
GAGGAGCTGATGGCCTTCGCCGCCGCGCTGGTCGAGGTGCAGGCCGCCGTCTCGGAGCGTGCCAACCAGGTGCTCCAGGA
GGCGCTGAACGTCGGCCGCTCCAGGAGCGCCAGCCGCATGCTCCAGGCGCCCCCACT---GCACCAACAGCAGCAACAGC
TCGCCGGGGGCGGTACCTTCGAGTTGGGTGGCACCAGCACCAACGCCGG------GATGGAGATACAGCAAATGCTCCTG
GCGATGCCTCCGCCGCCCCCGCCGGGGTTCGCGCCAGGAATGGACATGGTGCAGCACGGCGGATTCCCCTACTGA-----
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----------------------------------------------------------
>chr3A_1_TraesCS3A01G535200
CCAGCTGACAACTCATCACACCCTCGAACTTTATTGGCATGCATATATATAGCTAGTATTTGCTAGTGGATTAATGGTAA
TGGGGCAGTAATTGCAATTGAGCTAGCTAATGGCTAATGGGTAATTAATTGATTATGATTCCATCAAAGTCTTTCTAGAT
TGGACACATGACAACTCATCGCCATCATCTCGACTCTTCTGACAGGAGTTGCCATGAGCTCATTTGAAAAGTTTAAATTT
CGGAAACAAAATTTTTTTGGAATGCCACACTAAATAACCGAATTTTT-GAGATTTGGACAATTGATGTTGAATTATTCAA
TCAAAGTTCACTGACATGACAATAAATTTTGATATAATTCAAATTTAGTTTAAATTTAATACGAATATAGTATGTAACTT
CGAACTTACAATGATTTCAGTTACGTACACATCAGAGGCAATGCATTGGCATCACTCATCTCATGTGCTTGTCTCT----
CTACTACTGAATGAACACTGTATACGCCAAGTTGTCACGCGTGTTCCAGGTTACAAATGTTTCGATACCAACTGAAAATA
ACAAAAGTTCAGACT-TTTTTA-TTTTTGAAATACTGAACCTTTCTCATATCTTATCATACCCGTCACAACTCAG----C
GTGTCTTAATTCAATAGCAAGCGTGACCAGAGACCTGAGGTGAGGAACAAACTAACCATGCATTGAGCTCATGTCCTATC
GTACACATCCAAATTCCGAGGTTAAA---ACAAATATTACCTCCAAGATTCGTGTCAAGAAAAACCCAAAATTCCATCAA
AACTTCAATGGAAATAATGAACCCTGCTCAGATCTTTTCGCGCGCGTGACAACTCATGGGCAGAGAAGAGTGATAAAAAT
TGCATCGGCGATGATGAGTTGTCATGTACAGGG------------------GCAATTCCTCCTCGTCTTGATCTCTCCGC
TGCTATATAAACACCGATCC----TCGAGTAGTAGCCGCACAC----GTTCCTACCTCCACGCAGTCTCT---AGTCTCT
GGCATGGCAACGGCAACGGCAACGGCGCCGCGGCGGAGGGCAAGCATGGGGCGGCAGAAGATCGAGATCCGGAAGATCGA
GAGCGAGGAGGCGCGGCAGGTGTGCTTCTCCAAGCGCCGGGCGGGGCTGTTCAAGAAGGCGAGCGAGCTGGCCGTGCTGT
GCGGCGCCGAGGTTGCTGCCGTCGTCTTCTCCCCCGCAGGCAAGGCCTTCTCCTTCGGCCACCCCTCCGTCGAGGCCATC
CTCGACCGCTTCGTCCCCTCCGCGGCGCAGCATCCCGGGGTGGTGGTGGCCGGCGCGGGCCTAGGCGCCGCTGGTGACCG
CAACCTGGCGGAGCTGAACCGGCAGTACGGCGAGCTGCGCACGCAGCTGGAGGCCGAGAAGGCGCGCAAGGAGCGCGCCG
AGGAGGCCATGGCAAAGGAGCGCGCCGCGGGCAACCAGATGGCGGCGTGGCTCGACGCCGACCTGCGCGACATGGGGGAG
GAGGAGCTGATGGCCTTCGCCGCCGCGCTGGTCGAGGTGCAGGCCGCCGTCTCGGAGCGTGCCAACCAGGTGCTCCAGGA
GGCGCTGAACGTCGGCCGCTCCAGGAGCGCCAGCCGCATGCTCCAGGCGCCCCCACT---GCACCAACAGCAGCAACAGC
TCGCCGGGGGCGGTACCTTCGAGTTGGGTGGCACCAGCACCAACGCCGG------GATGGAGATACAGCAAATGCTCCTG
GCGATGCCTCCGCCGCCCCCGCCGGGGTTCGCGCCAGGAATGGACATGGTGCAGCACGGCGGATTCCCCTACTGAGGAAG
TGGAAAGAAGATGAATGA--------------------------------------------------------------
----------------------------------------------------TCCATCTATCTGGATGCATGATGCATAT
GCAATCTTGTTTTGTTTTTTTTTTCACTTTTATTGTCGTTGCGTTG---TGCAACGCAACATACTGGGTCCTTCAATTGT
GATTTGTCTCGGTACTCGAGATTAATGAAATAAAAGCCCTTGTTTGCTTATCTCTGCTG----GCAACATTGCAAAGATG
CATGCAAGAATGTTTTCTGTCAATCAGTACTCGTTATAAGCTTGTTAAGATGGTGGATCTGTAAGATTTGCACAATGAAA
A--TGGCCTTAATTAGTTTTGGCAACAGATAATGCATAACACACGTGTTATGTTCATCCCAATTTCTGGACAGTCTACAC
AAAACTGAGCAAACTAGTTTTTTTTCAACACAGTACAAACGTCTCCTCCCACTGAAAGCACATTACCGGAAATCCTAAAA
TGAATTCAAGAATAATGCGAGCACCGGGACTTGAACTCTGATGTGCTGAGAATACCACTGTCCCTCTAACCATCCAACCA
CAGGTTGGTTCGC-----------------------------------------------------------ACTGAGCA
AACTAGTTGATAGACACAAGGGTAGGAATTGTTTTATGAAATAAGTATGCCCAACAAAATTGAAGGTACAGCCCCAATGA
AATAAAAAGGTTAAGGGACAAACGAAGCCAAGCAAATAGTTAAGGAGAAATAAAGTTTTACTTTCAAAAAT-AGATAACA
AAATGTGATGCCTCATTTGCAGTAATGTCAAGTTAATCTCAGTTGGACATAATTTTTCATCAAGGCCCTCGATCAACATA
ATGGCCAGTGGTAAATGGCAGTGCGTTGAGGAAAGACTTTAACGTGCTGCAAGCTAGTAACAGTGCACATTAGGATACAA
ATTACTGGATTATTCATGAGCTGCCATTTCATTTGGAGGATGATATATACACACTTATGAAGTACCAATGCTAATGCTGG
ATACGACGTAACAATGCTGGATGACACCTCATGCATGCATATGTGTGTTTAATTTAGC
>chr3D_1
CCAGCTGACAACTCATCACACCCTTGAACTTTATTCTCACACATATATATAGCTACTCTTTGCTAGTGGATTAATGGCAA
TGGGGCGGTAATTGCAATCGAGCTAGCTAATGGCTAATGGGTAATTACTTGATTATGATTCCATCAAAGTCTTTCTAGAT
TGGATACATGACAACTCATCGTCATCGTCTCTACTCTTCTGACAGGTGTTGCCATGAGCTCATCTGAAAATTTTAAATTT
CGGCAACA------------------------------------------------------------------------
--------------------------ATTTGATATAATTCAAATTTAGTTTAAATTTAATACTAATCTAGTATGTAATTT
CGAGCTTACAAAGATTACAGTTACGTACACATCGTAGGAAATGCATTGGCATCACTCATCTCACGTGTTTGTCTCTCTAG
CTACTACTGAATGAACACTGTATACGCCAAGTTGTCACACGTATTCCAGGTTACAAATATTTCAATACCAACTGAAAATA
ACAAAAATTCAGAAT-TTTTTTACTTTTGAAATACTGAACCTTTCTCATATCTTATCATACCCGTCACAACTCAGCCAGC
GTGTCTTAATTCAGTAGCAAGCGTGACCAGAGACCTGAGGTGAGGAACTGAAAATAA-----------------------
---------CAAATTCTGAGGTTACTATTACAAACATTACCTCCAAGATTTTTGTCAAAACATCGG--AAATTCCATCAA
AACTTCAATGGAAATAATGAACCCTGCTCAAATCTTTTCGTGCGCGTGACAACTCATGGGCAGAGAAGAGCGATAAAAAT
TGCATCGCCCATGACGATTTGTCATGTACAGGGCAATTCATTATGAGGGGTGCAATTCCTCCTCGTCTTGATCTCTCCGC
TGCTATATAAACACCAATCC----TCGAGTAGAAGCCAGACAC----ATACCTACCTCGTCTCAGTTTCTAGAAGTCTCT
GGCAT------GGCAATGGCAACGGCGCCGCGGCGGAGGGCGAGCATGGGGCGGCAGAAGATCGAGATCCGGAAGATCGA
GAGCGAGGAGGCGCGGCAGGTGTGCTTCTCCAAGCGCCGGGCCGGCCTGTTCAAGAAGGCGAGCGAGCTGGCCGTGCTGT
GCGGCGCCGAGGTTGCCGCCGTCGTCTTCTCCCCCGCAGGCAAGGCCTTCTCCTTCGGCCACCCCTCCGTCGAGGCCATC
TTTGACCGCTTCGTCCCCTCCGCCGCGCAGCATCCCGGGGCGGTGGCTGCCGGCGCGGGCCTGGGCGCCTCGGGCGACCG
CAACCTGGCGGAGCTGAACCGGCAGTACGGCGAGCTGCGCACGCAGCTGGAGGCGGAGAAGGCGCGGAAGGAGCGCGCGG
AGGAGGCCATGGCGAAGGAGCGCGCCGCGGGCAACCAGATGGCGGCGTGGCTCGACGCCGACCTGCGCGACATGGGGGAG
GAGGAGCTGATGGCCTTCGCCGCCGCGCTGGTGGAGGTGCAGGCCGCCGTCTCGGAGCGCGCCAACCAGGTGCTCCAGGA
GGCGCTAAACGTCGGCCGCTCCAGGAGCGCCAGCCGCATGCTCCAGGCGCCCCCACC---GCACCAGCAGCAGCAGCAGC
TCGCCGGGGGCGGTACCTTCGAGTTCGGTGGCACCAGCACCAACGCCGG------TATGGAGATACAGCAAATGCTGCTG
GCGATGCCTCCGCCGCCCCCGCCGGGGTTCGCCCCAGGAATGGACATAGTGCAACACGGCGGATTCCCCTATTGAGGAAG
TGAGAAGAAGATGAATGATATCCAGTCATCGAGTCGCGAGTCCATCCGTTCTTCCAGCACATGCATGCACGCATGCATGG
ACGCCGTCAGTGAGTCTTTGGTTATATGCATCTTGCATGCCGTTGATGATGATCCATCTGCCTGGATGCATGATGCATAT
GCAATCTTGTTTTCC----TATTTCGTTTTTATTGTCGTTGTT-----TTGCAACGAAACATATTGGGTCCTTCAATTGT
GATTTGTCTCGGTGCTCGAGATTAATGAAATAAAAGCCCTTGTGTACTTATCTCTGCTCGATCGCAACAATGCAAAGATG
CATGCAAGAATGTTTTCTGTTAATCAGTACTCGTTAAAAGCTTGTTAAGATGGTGGATCTGTAAGATTTGCACAATGAAA
A--TGGACTTAATTAGTTTTGGCAACAGATAATTCATAACACACGTGTTATGTTCATCCCGACTTCTGGACAGTCTACAC
AAAACTGAGCAAACTAGTTTTTTT------------AAACGTCTCCT-CCACTGAAAGCACATCGCCGAAAATCCTAAAA
TAAATTCAGGAATAATGCGAGCATCAGGACTTGAACCCTGGTAGGCTAGGGATATCACCGTCCCTCTAACCATCCAACCA
CAGGTTGGTTCACACCCTGATAGGCTGGGGATATCACTGTCCCTTTAACCATCCAACCACGGGTTGGTTCGTACTGAGCA
AACTAGTTGATAGACACAAGGGTAGGAATTGTTTTATGAGATAAGTATGCCCAACAAAATTGAAGGTACGGCCCCAACGA
GATAAAAAGGTCAAGGGACAAACGAAGCCAAGCAAATAGTTAAGGAGAAATAAAGTTTTACTTTCAAAAAT-AGATAACA
AAAAGTGATGCCCCGTTTGCAGTAATGTCAAGTTAATCTCATTTGGACAGAATTTGTCATCAAGGCCCTCGATAAACATA
ATGGCCAGTGGGAAATGGCAGTGTGTTGAGGAAAGAGATTAACTTGCTGCAAGCTAATAATAGTGCACATTAGGATACAA
ATTACTGGATTATTCATGAGCTGCCGTTTCATTTGGAGGATG----ATACACACTTATGAAGTATCAATGCTAATGCTGG
ATATGACGTAACAATGCTGGATGACACCTCATGCA-----------------------
>chr3B_3
--AGCTGACAACTCATCACACCCTTGAACTTTATTGTCACGCATATATAAAGCCACTATTTGCTAGTGGATGAATGGCAA
TGGGGCGGTAATTGCAATCGAGCTAACTAATGGCTAATGGGTAATTAATTGATTATGATTCCATCAAAGTCTTTCTAGAT
TGGACACACGACAACTCATCGCCATCATCTCAACTCTTCTGACAGGTGTTGCCTTGAGCTCATCT----AGTTTAAATTT
TGGCAACATAAAATTTTCGGAACGCCACACTAAATAACCGAATTTTTTGAGATTTGGAAAATTGATGTTGAATTATTCAA
TCAAAGTTCACTGACATGACAATAAAATTTAATATAATTCAAATTTAGTTTAAATTTAATACTAATCTAGTATGTAATTT
CGAGCTTACAAAGATTACGGTTATGTACACATCATAGGCAATACATTGGCATCACTCACCTCATGTGTTTGTCTTTCTAG
CTACTACTGAATTAAAACTGTATACGCCAAGTTGTCACACGTATTCCAGGTTACAAATGTTTTGATACCAACTGAAAATA
ACAAAAATTTCACACCTTTTTTCTTTTTTAAATACTGAACCTTTGTCATATCTTATCATACCCGTCACAACTCAGT----
GTGTCTTAATTCGGTAGCAAGTGTGAC-----------------------------------------------------
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-----------------------------------------------CAGAATTTGTCATCAAGGCCCTCTATCAACATA
ATGGCCAGTAGTAAATGGCAGTGTGTTGAGGAAAGAGATTAACTTGCTGCAAGCTAATAATAGTGCACATCGGGATACAA
ATTACTGGATTATTCATGAGCTGTTGTTTCATTTGGAGGATG----ATACACACTTATGAAGTATCAATGCTAATGCTGG
ATATGACGTAACAATGCTGGATGACACCTCATGCA-----------------------
>chr3B_851
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----------------------------------------------------------------GAAGAGTGATAAAAAT
TGCATCGCCGATGATGAGTTGTCATGCACAGGCCAATTCATTCAATTATGAGTGCAA----------TTGATCTCTCCGC
GGCTATATAAACACCGATCCATCCTCGAGTAGTAGCCAGACACATATATACCTACCTCGTCTCAGTCCCT---AGTCTTT
GGCATGGCAATGGCGACGGCAACGGCGCCGCGGCGGAGGGCAAGCATGGGGCGGCAGAAGATCGAGATCCGGAAGATCGA
GAGCGAGGAGGCGCGGCAGGTGTGCTTCTCCAAGCGCCGGGCGGGCCTGTTCAAGAAGGCCAGCGAGCTGGCCGTGCTGT
GCGGCGCCGAGGTGGCCGCCGTCGTCTTCTCCCCCGCAGGCAAGGCCTTCTCCTTCGGCCACCCCTCCGTCGAGGCCATC
CTCGACCGCTTCGTCCCCTCCGCAGCTCAGCAGCCCGGGGCGGTGGTGCCCGGCGCGGGCCTGGGCGCCGCGGGCGACCG
CAACCTTGCGGAGCTGAACCGGCAGTACGGCGAGCTGCGCACGCAGCTGGAGGCGGAGAAGGCGCGCAAGGAGCGCGCGG
AGGAGGCCATGGCGAAGGAGCGCGCCGCGGGGAACCAGATGGCGGCGTGGCTCGACGCCGACCTGCGGGACATGGGGGAG
GAGGAGCTGATGGCCTTCGCCGCCGCGCTCGTGGAGGTGCAGGCCGCCGTCTCGGAGCGCGCCAACCAGGTGCTCCAGGA
GGCGCTCAACGTCGGCCGCTCCAGGAGCGCCAGCCGCATGCTCCAGGCGCCCCCACC---GCCGCAACAGCAGCAGCAAC
TCGCCGGGGGCGGTACCTTCGAGTTCGGTAACACCAGCACCAACGCCGG------TATGGAGATACAGCAAATGCTGCTG
GCGATGCCTCCGCCGCCCCCGCCGGGGTTCGCCCCAGGAATGGACATGGTGCAGCACGGCGGATTCCCCTACTGAGGAAG
TGGGATGAAGATGAATGAGATCCAGTCATCGAGTCGCGAGTCCATCCGTTCTTCCAGTGCATGCATGCACGCATGCATGG
ACGCCG-CAGTGAGTCTTTGGTTATATGCATCTTGCATGCCGTTGATGATGATCCATCTATGTGGATGCATGATGCATAT
GCAATCTTGTTTTTG----TTTTTCGCTTTTATTGTCGTTGTGTTGTGTTGCAACGCAACATATTGGGTCCTTCAATTGT
GATTTATCTCGGTGCTCGAGATTAATGAAATAAAAGCCCTTG--------------------------------------
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>chr3A_1020
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----------------------CGGCGCCAAAGCGGAGGGCCGGCAATGGGCGGACGAAGATCGCCATCCGGCGGATCGA
GAAGAAGGGCGCCCGACAGGTATGCTTCGCCAAGCGCCGGCAGGGCCTGTTTAACAAGGCCAACGAGCTGGCGGTGATGT
GCGGCGCCCAGGTGGCCGCCATCACCTTCTCGGACGGCGGAAAGGCCTTCTCCTTTGGGCACCCCTCCGCCGAGGCCGTC
GTCGACCGCTTCCTGGCGGGGGGAGGCGCGTTGGTCCAGGGC---------------------GCCGCCGCCGACGACGA
CGAGCTGAAGAAGCTGCACCAGCTGCACGGCGAGCTGCGCACGCGGTTGAAGGAGGTGAAGGCGCGGAAAGGGCGCGTGG
TGGAGGCCATGGCAAAGGAGCGCGCCGCGGGGGATCAATTTGCGGTGTGGCTCGACCCCGAGTTGGGCGACATTGGGGAG
GAGGAGCTGATGGCCTTCGCCGCCGAGCTGATGGTGGCGCGGGCCGCCGTCTCGGACCGCGCATACCAGGTGCTCTTGGA
GGCGCAGAACGTCAGCCGC-------------------------------------------------------------
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>chr3A_1020
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----------------------CGGCGCCAAAGCGGAGGGCTGACAATGGGCGGACGAAGATCGCCATCCGGCGGATCGA
GAAGAAGGGCGCCCGGCAGGTATGCTTCGCCAAGCGCCGGCAGGGCCTGTTTAACAAGGCCAACGAGCTGGCGGTGATGT
GCGGCGCCCAGGTGGCCGCCGTCACCTTCTCGGACGGCGGAAAGGCCTTCTCCTTCGGGCACCCCTCCGCCGAGGCCGTC
GTCGACCGCTTCCTGGCGGGGGGAGGCGCGTTGGTCCAGGGCGG------------------GGGCGCCGCCGCCGACGA
CGAGCTGAAGAAGCTGCACCAACTGCACGGCGAGCTCCGCACGCGGTTGAAGGAGGTGAAGGTGCGGAAAGGGCGCGTGG
AGGAGGCCATGGCAAAGGAGCGCGCCGCTGGGGATCAATTTGCGGTGTGGCTCGACCCCGAGTTGGGCGACATTGGGGAG
GAGGAGCTGATGGCCTTCGCCGCCAAGCTGATGGTGGCTCGGGCCGCCGTCTCGGACCGCGCATGCCAGGTGCTCTTGGA
GGCGCAGAACGTCAGCCGC-------------------------------------------------------------
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>chr6D_1021
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-----------------------GGCGCCGAAGCGGAAGCTTAGCATGGGGCGGCAGAAGATCGAGATCCGGCGGATCGA
GAGCGAGGAGGCGCGGCAGGTGTGCTTCTCCAAGCGCCGGGCGGGGCTGTTCAAGAAGGTGAGCGAGCTGGCCGTGCTAT
GCGGCGCCGAGGTGGCCGCCGTCGTCTTCTCCCCGGCCGGCAAGGCCTTCTCCTTCGGCCACCCCTCCGTCGAGGCCATC
CTCGACCGCTTCATCCCCTCCGCGGCGCAGC---TCGGTGTGGCGGGGGCCGGCGCGGGTCTGGGCGCCGCCGGCGACCG
CAACCTGGCGGAGCTGAACCGGCAGTACGGCCAGCTGCGCGAGCAGCTGGAGGCGGAGAAGGCGCGGAAGGAGCGCGCGG
AGGAGGCCATGGCGAAGGAGCGCGCCAAGGGGAGCCCGGCGGCGGCATGGCTCGACGCCGACTTGCGCGACCTGGGGGAG
GAGGAGCTCATGGCCTTCGCCGCCGCGCTGGCGGACGTGCAGGCCGCCGTCTCCGAGCGCGCCAACCAGGTGCTCCAGGA
GGCGCTGGACGTCGGCCGCGCCAGGAGCGCCAGCCGCATGCTCCTGGCGCCCCCGCC---GCA---------GCAGCAGC
TCGCGGGCGGCGGTGGCTTTGAGTTCGCTAGCTGCGGCGCGAACTCCAGGAATGAGATGGAGATGCAGCAGATGTTGATG
GCCATGCCGCCACCGCCGGAGTTCGC---CGCCACCGGAATGGAGATGGTGCAACAGGGGAT------------------
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>chr6B_1021
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------GGCGCCGAAGCGGAAGCTTAGCATGGGGCGGCAGAAGATCGAGATCCGGCGGATCGA
GAGCGAGGAGGCGCGCCAGGTGTGCTTCTCCAAGCGCCGGGCGGGGCTGTTCAAGAAGGTGAGCGAGCTGGCCGTGCTCT
GCGGCGCCGAGGTGGCCGCCGTCGTCTTCTCCCCGGCCGGCAAGGCCTTCTCCTTCGGCCACCCCTCCGTCGAGGCCATC
CTCGACCGCTTCATCCCCTCCGCGGCGCAGC---TCGGTGCGGCGGGGGCCGGCGCGGGCCTGGGCGCCGCCGGCGACCG
CAACCTGGCGGAGCTGAACCGACAGTACGGCCAGCTGCGCGAGCAGCTGGAGGCGGAGAAGGCGCGGAAGGAGCGCGCGG
ACGAGGCCATGGCGAAGGAGCGCGCCAAGGGGAGCCAGGCGGCGGCGTGGCTCAACGCCGACCTGCGCGACCTGGGGGAG
GAGGAGCTGATGGCCTTCGCCGCCGCGCTGGCGGACGTGCAGGCCGCCGTCTCTGCGCGCGCCAACCAGGTGCTCCAGGA
GGCGCTGGACGTCGGCCGCGCCAGGAGCGCCAGCCGCATGCTCCTCGCGCCCCCGCCGCAGCA---------GCAGCAGC
TCGTGGGCGGCGGTGGCTTTGAGTTCGCTAGCTGCAGCGCGAACTCCAGGAATGAGATGGAGATGCAGCAGATGTTGATG
GCCATGCCGCCACCGCC---------------------------------------------------------------
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>chr6B_1021
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-----------------------GGCGCCGAAGCGGAAGCTTAGCATGGGGCGGCAGAAGATCGAGATCCGGCGGATCGA
GAGCGAGGAGGCGCGCCAGGTGTGCTTCTCCAAGCGCCGGGCGGGGCTGTTCAAGAAGGTGAGCGAGCTGGCCGTGCTCT
GCGGCGCCGAGGTGGCCGCCGTCGTCTTCTCCCCGGCCGGCAAGGCCTTCTCCTTCGGCCACCCCTCCGTCGAGGCCATC
CTCGACCGCTTCATCCCCTCCGCCGCGGCGCAGGTCGGGCCGGCG---------GCGGGCCTTGGTGCCGCCGGCGACCG
CAACCTGGCGGAGCTGAACCGGCAGTACGGCCAGCTGCGCGAGCAGCTGGAGTCGGAGAAGGCGCGGAAGGAGCGCGCGG
ACGAGGCCATGGAGAAGGAGCGCGCCACGGGGAGCCCGGCGGCGGCGTGGCTCGACGCCTACCTGCGCGACCTCGGGGAG
GAGGAGCTGATGGCCTTCGCCGCCGCGCTGGTGGACGTGCAGGGCGCCGTCTCCGCGCGCGCCAACCAGGTGCTCCAGGA
GGCGCTGGACGTCGGCCGCGCCAGGAGCGCCAGCCGCATGCTCCTGGCGCCCCC--------------------------
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>chr6A_1021
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-----------------------GGCGCCGAAGCGGAAGCTCAGCATGGGGCGGCAGAAGATCGAGATCCGGCGGATCGA
GAGCGAGGAGGCGCGCCAGGTGTGCTTCTCCAAGCGCCGGGCGGGGCTGTTCAAGAAGGTGAGCGAGCTGGCCGTGCTCT
GCGGCGCCGAGGTGGCCGCCGTCGTCTTCTCCCCGGCCGGCAAGGCCTTCTCCTTCGGCCACCCCTCCGTCGAGGCCATC
CTCGACCGCTTCATCCCCTCCGCCGCCGCGCAGGTCGGGGCGGCG---------GCGGGCCTCGGCGCCGCCGGCGACCG
CAACCTCGCGGAGCTGAACCGGCAGTACGGCCAGCTGCGCGAGCAGCTGGAGGCGGAGAAGGCGCGGAAGGACCGCGCGG
AGGAGGCCATGGCGGAGGAGCGCGCCAAGGGCAGCCCGGCGGCGGCGTGGCTCGACGCCGACCTGCGCGACCTGGGGGAG
GAGGAGCTCATGGCCTTCGCCGCCGCGCTGGCGGACGTGCAGACCGCCGTCTCCGCGCGCGCCAACCAGGTGCTCCAGGA
GGCGCTCGACGTCGGCCGCGCCAGGAGCGCCAGCCGCATGCTCCTCGCACCCCCGCC---GCCGCAGCAGCAGC------
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>chr3B_1939
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---------------------------AAATAAAAGCCCTTGTTTACTTATCTCTGCTG----GCAACAATGCAAAGATG
CATGCAAGAATGTTTTCTGTTAATCAGTACTCGTTAAAAGCTTGTTAAGATGGTAGATCAGCAAGATTTGCGCAATGAAA
GTGTGGCCTTAATTTGTTTCGGGAACAGATAATTCATAACAAG-----TATGTTCAACCCGATTTCTGGACAGTCTACCC
AGAACTGA------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GCA
AACTAGTTGATAGACACAAGGGTAGGAATTGCTTTATGAGAATAGTTTGCCCAACAAAATTGAAGGTACGGCCCCAATGA
AATAAAAAGGTTAAGGGACAAAAAAAGCCAAGCAAAAAATTAAGGAGAAATGAAGTTAGACTTTCAAAAATTAGATAACA
AAATGTGATGCCTCTCTTGCAATAAAGTCAAGTTAATCTCATTTCGACAGAATTTGTCATCAAGGCCCTCGATCAACACA
ATGGCCAGTGGTAAATGGCAGTGTGTTGAGGAAAGAGATTAACTTGCTGCGAGCTAATAATAGTGCACGTTAGGATACAA
ATTACTGGATTATTCATGAGCTGCCGTTTCATTTGGAGGATG----ATACACACTTATGAAGTATCAATGCTAATGCTGG
ATATGACGTAACAATGCTGGATAGCACCTCATGCA-----------------------
>SNPs
------------------------S-----------S--S---------------S---------------------S--
------S-----------S-------------------------------------------------------------
-------------------------------S--------------S----------------S----------------
---S----S--SS----S----S-----------------------------------S---------------------
--------------------------S-----------------------------------S---S----------S--
---S-------S----S-----------------S--------------------------------S------------
--------------------------------------S---S-------------------------------------
------S------S-------S----------------------------------------------------------
-------------S----------------------------------SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS-------S-------SS--------S---------------SS------S-S-SSSSSS------------
------------------------------S---------S---------------------------------------
-------S------------------------------------------------------------------------
-------------------------------------SS--------S-S--------SS-S------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------S--------S--S-----
------------------------------------------------------S-----------------------S-
--------------------------------------------------------------------------------
--------------------------------S--------------------------S--------------------
--------------------------------------------------------S------------------S----
-------------------------S--------------------------------------------------S---
--------------------------------S-----------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------SSSSSS------S---------------S---------------------S----------------
-------------S-------------------------------S-----------------------S----------
--------------------S---------------S-------------------------------------------
---------------------------------S--------------------------S-------------------
------------------------SSSSSSSSSSSS-----------S---------------SS---S-----------
-S------S--------------S-S----------S---S-SS---SS-S---S---S---------------------
-----------S--------------------------------------------------------------------
---------------------------------------S-----------------------------S----------
--------------------------------------------------------------------------------
--------------S--------------------------S-------S-----S------------------------
-----------------------S------------SS-----S------------S---S-------------------
-------------------------S----------------SSSS------------------S---------------
---S-------------------------------SSSSSSSSSSSSSSSSSSSSSSS
>forward_1010
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------------------------------GAGTAGTAGCCGCACACGTT------------------------------
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>reverse_2355
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----------------------------------ACAAACGTCTCCTCCCACTG--------------------------
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