>input_sequence_68971
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--------------------------------------------ATGTGGGCGGTGCCCATGAGGAAGCATGGCATGGTG
CCGGAACACAGCTTCTTCCAAGCTCTC-AGCTCATGGCTGATTGCAATAATGCCGGACAAATTCTACGACAAGGTGGAGC
AGGGAAGCATTATCCTCAAGAAAGCAAACGAATTTAGCTTCTGCAAGGAAGGTGTCATTGTACAAGGCGAGCCCGCGCCG
ATCAAGAGCGACGTCGTGATCTTTGCGACCGGGTACAATGGGGATCAGAAGCTCAGAGAGTTGTTCACCTCACCTCTGTT
CAGAGAGATCGTTGTTGGCACGCCAGCTACTGCGGTCCCTCTCTACAGGTTCCTTTCAACCCTTTCCCTTTCATTTTAGT
CAACTGAAC---TAGTTGATACGTACTATATCAATGCAGCACAATTAACTAACCATAGTTCTTACGGAATGTGACAGGCT
ATGCGTTCACCCCAGGATTCCTCAGCTAGCAATCGTTGGCTACTCTGAGAGCATGGGAGATCTACACACCTCGGAGATAC
GGTCCAAA-TGGCTGGCGCATTTCCTTGATGGGGGATTTTGTTTGCCTGCCATAAGATCAATGGAGGAAAATGTGAAGGA
ATGGGAGGCATACATGAAACGCTACTCGGGCGACTACTTCCGTCGATCTTGCGTTGCTTCTATCGGTATCTGGCACAACG
ACCAGCTGTGCAAGGACATGGGCTGTGAGCCTAGGAGGAAGAAGGGATTTCTGGCTGACTGGCTGATTCCCTATGAACCT
GTAGATTATGCAGGTGTCAATCTGAGGAACTAG-----------------------------------------------
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>chr5D_1_TraesCS5D01G189200
TTTGGCACAGTCGTGCTTCTGGATGCTCTGGCTTGAGCGAAACGGCATGGTCTTCCAAGCC---TCAAGCACCATACCCC
AGTTCTGCGGCCGAAAAAGCAATTTGGATCAGTGGGCAACGGATGGCGGTGGTCAGCGGCGGCACAGTGGGCATGGCGGT
GATGTGCTGACACTTTATGGAAAGTGTTACGGGTCAACTTCTCCTAAATGTACAGGAAGTTGGGCAGATTATATGAGATC
TCGATTTATTGGAGCATTATTTTTGCCCAACTTTTCTTACACTAGATAC-TATAACTTTATGGATATGGAATCGTTGAAG
ATA-----------------------------------------------------------------------------
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-------------------------------------CTCTAAACATGCATATATGTTTTCCCTAAT-ACTAAATTATAT
CCTTTTCTGAAAAAAAATGTGGCTAGACTCAACGGTTTGCCTAACGTTGACCTTTTGTGGCATA--TAGATACCCGTGGC
CGACTTTGTAGTGCTATGCGTTGGACGGTACAGCGGCATCCCAAACATTCCAACTTTCCCACCGGCGAAAGGGCCAGAGG
CCTTTAATGGCACGGTGATCCACTCCATGGATTACTCCAACATGAACGATGCAAAAGCCACTGAGCTCATCAAAGGCAAG
CTCGTCACCGTCGTCGGCTACCAAAAGTCTGCTCTCGACATCGCCACAGAGTGCGCAAATGTGAATGGTTCGACACATCC
TTGTACAATGATTGTTCGGACAAAGAGATGGATCATCCCTGACTTCTATGCTTGGGGTGTCCCCGTTCCTTTCTTGTGCT
TCAATCGCTTGTCCGAACTACTAGTTCACAAGCCAGGAGAGGGGCTGCTCCTTAGCCTT-TGGCTACCTTCTTGTCACCC
TTGGTACGTATATAATGGCCACTGTATTTCTTTATATAGTCTTCC-----------------------------------
-------TTGAGTCACTTATTTTGGGACGGAGGGAATATAAAATAGCTCCCAAGGGCTCTTTTTTATGCATTAATTTAAT
TTGATCAGAGATGGATACTGTCAAAGTTTGTGGAGAGCTACTACATGTGGGCGGTGCCCATGAGGAAGCATGGCATGGTG
CCGGAACACAGCTTCTTCCAAGCTCTC-AGCTCATGGCTGATTGCAATAATGCCGGACAAATTCTACGACAAGGTGGAGC
AGGGAAGCATTATCCTCAAGAAAGCAAACGAATTTAGCTTCTGCAAGGAAGGTGTCATTGTACAAGGCGAGCCCGCGCCG
ATCAAGAGCGACGTCGTGATCTTTGCGACCGGGTACAATGGGGATCAGAAGCTCAGAGAGTTGTTCACCTCACCTCTGTT
CAGAGAGATCGTTGTTGGCACGCCAGCTACTGCGGTCCCTCTCTACAGGTTCCTTTCAACCCTTTCCCTTTCATTTTAGT
CAACTGAAC---TAGTTGATACGTACTATATCAATGCAGCACAATTAACTAACCATAGTTCTTACGGAATGTGACAGGCT
ATGCGTTCACCCCAGGATTCCTCAGCTAGCAATCGTTGGCTACTCTGAGAGCATGGGAGATCTACACACCTCGGAGATAC
GGTCCAAA-TGGCTGGCGCATTTCCTTGATGGGGGATTTTGTTTGCCTGCCATAAGATCAATGGAGGAAAATGTGAAGGA
ATGGGAGGCATACATGAAACGCTACTCGGGCGACTACTTCCGTCGATCTTGCGTTGCTTCTATCGGTATCTGGCACAACG
ACCAGCTGTGCAAGGACATGGGCTGTGAGCCTAGGAGGAAGAAGGGATTTCTGGCTGACTGGCTGATTCCCTATGAACCT
GTAGATTATGCAGGTGTCAATCTGAGGAACTAGAATAATAACCAATTGTTTGTATTTCTGACGAACTGCGTCAAACTAGC
GGTGGCTGCTGCAACATTGAAAGATTATCCCTTTGCATACTTTATTGTTGTCGTGGAAGTAGCCCAGCTAATAAATAAAA
TCGTGCTTATTCACCAAAGGCTAGTCCAGCGACATGTTTCTCGTTGAGTTGGCTTAAATGATGGAATTGTTATATTCTTA
AGCCGCAGCTTTGAAGACTACCCATAGCCGAAAATACAACTATGAACCTGAGAGCATGCGCATCCGAATTGAAAGATGAA
ATAAAATA--GTTAAATACTCCCTCCGTTCCTAAATAATTGTCTTTTTAGATATTTCAATAAATGACTACATACGAAGCA
AAATGAGTGAATCTACACTTTAAAATATGTCTACATACATAGTCCATTTGAGATGGCTAGAAAGACAAATATTTAGGAAC
GGAGGGAGTATTTTTAAAACCATTTTGCCGGGCGAGCCAACCATGGATTATGTTGACCTGTCATGGTCGTGTTTTGCCGG
CGAGCCAACCATGGATTACGTGGAAGCAGCCCAGCCAATAAATATAATCATTCTTTATCCACATACTGGTCTACTGAACT
AGTATTTTGTATTTCGGATCGAGTTGCCTCGTCGAACTTTTTTTTCAAATCAAGAGCTTCATTAATTAAACAGTACCATT
ACTCTTTCCACATGCAATCAATTACTCCCTCAGTCCCATAATATAAAATGTTTTTTAAGCTAAACTAGCTTGCAAAAACA
TCTTATATTATAAACAAAGAAAGTAAAAAACTAAAAATATAGTTGATCCATAAACATCTACGCCTACTAACAGATGCCTG
CTTAGCACAAAGGTGCATGTGCCCCAATATTAGCTTCATGCCCAACAAAATTGAACTGGAAAGAAGCTAGATTGCTGCTA
AGCTCTTTGATCTCATGAAGAATTGATGCTATCTCCGATCTTCCATCCATCCTCGTCCTCCACAGCCTGACAACT
>chr5A_18
-----------------TCTGGATGCTCTGGCTTGAGCGAAACGGCATGTTCTTCCAAGCCTCATCAAGCACCATACCCT
AGTTCTGCGGCCAAAAAAGCAATTTGGGTCGGCGGACAGCAGATGGCGATGGTCAGCGGCGGCACAGTGGGCATGTCGG-
---------------------AAGTGCTACACGTCAACTTCTACTAAATGTACAGAAAGTTGGGCAGATTATATGAGATC
TCGATTTGTTGGAGCATTACTTTTGCCCAACTCCCTTTAAACTAGATATTC-----TTTACGGATACGGAATCATTGGAG
ATA-----------------------------------------------------------------------------
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-------------------------------------CTCTAAACATGCATATATGCTTTCCATAATAA----ATTAGAT
CATTTTCTGAAAAAC----TGGTTAGACTCAATGGTTTGCCTAACGTTGATCTTTCCTTGCATATCTAGACACACGTGGC
CGACTTCGTGGTGCTATGCGTTGGACGGTACAGCGGCATCCCCAACATTCCAACTTTCCCACCGGAGAAAGGGCCAGAGG
CCTTTAATGGCACGGTGATCCACTCCATGGATTACTCCAACATGGATGATGCAAAAGCCACTGAGCTCATCAAAGGCAAG
CTCGTCACCGTCGTCGGCTATCAAAAGTCTGCTCTCGACATCGCCACAGAGTGCGCAAATGTGAATGGTCCGACACATCC
TTGTACAATGATTGTTCGGACAAAGAGATGGATCATCCCTGACTTATATGCTTGGGGTGTCCCGGTTCCTTTCTTGTGCT
TCAATCGCTTGTCCGAACTACTAGTTCACAAGCCAGGAGAGGGGCTGCTCCTTAGCCTGCTGGCTACCTTCTTGTCACCC
CTGGTATGTATATAATGGCCACTGTATTTCTTTTATATACTCCTCTCCCATCTCAAAATAAGTGACTTGGCTTTGTAAGT
TACAAAGTTGAGTCACTTATTTTGGGACGGAGGAAGTATAAAATAGCTACCAATGGCTCCTTTTCATACATTAATTTAAC
TTGATCAGAGATGGATACTCTCAAAGTTTGTGGAGAGCTACTACATGTGGGCGGTGCCCATGAGGAAGCATGGCATGGTG
CCGGAACACAGCTTCTTTCAAGCTCTC-AGCTCATGGCTGATTGCAATAATGCCAGACAAATTCTACGACAAGGTGGAGC
AGGGAAGCATTATCCTCAAGAAAGCAAACAAATTTAGCTTCTGCACAGAAGGTGTCATCGTACCAGGCGAGCCCGCACCG
ATCAAGAGCGATGTCGTGATCTTTGCGACCGGGTACAATGGGGATCAGAAGCTCAGAGAGCTGTTTGCCTCACCTCTCTT
CAGAGAGATCGTTGTTGGCACGCCAGTTACTGCGGTCCCTCTCTACAGGTTCCTTTCAACCATTTCCCTTTCAATTTAGT
CAAATGAAC---TAGTTGATATG---TATATCAATGCAGCACAATTAACTAACCATAGTTTTTACGGAATGTGACAGGCT
ATGCGTCCACCCCAGGATTCCTCAGCTAGCAATCGTTGGCTACTCCGAGAGCATGGGAGATCTACACACCTCGGAGATAC
GGTCCAAA-TGGCTGGCGCATTTCCTTGATGGGGGATTTAGTTTGCCTGCCATAAGATCGATGGAGGAAAATGTGAAGGA
GTGGGACGCATACATGAAACGCTACTTGGGCGACTACTTCCGTCGATCTTGCGTCGGTTCTATCGGTATCTGGCACAACG
ACCAGCTGTGCAAGGACATGGGGTGGGAGCCTAGGAGGAAGAAGGGCTTTCTGGCTGACTGGTTGATTCCCTATGAACCT
GCAGATTACGCAAGTGTCAATCCGAGGAACTAGAATAATAA---------------------------------------
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>chr5B_20
-------------------TGGATGCTCTGGCTTGAGCGAAACGGCATGGTCTTCCAAGCCTCATCAAGCACCATACCCC
AGTTC-------------------------AGTGGGCAACGGATGGCGGTGGTCAGCGGCGGCACAGTGGGCATGGCGGT
GACGTGCTGACACTTTATGGGAAGTATTACGGGTCAACTTCTCCTAAATGTACAGGAAGTTGGGCAGATTATATGAGATC
TCGATTTATTGGAGCATTATTTTTGCCCAACTTTTCTTAAACTAGATACGTATAAGTTTATGGATATGGAACCGTTGAAG
ATACTCTAAACATGAGTAATTGACAAAAACTACCACATTTCACGTATCCGTCCCACAGAACTACCACATTTTGAAAACTG
ACCAAAAACTCCAGATTAGTGCTAATTTCGTGGTAAAAAACTACCAAGTCGAGTCGACGACCGATTTAACCATTTTAAAC
CCCTTTCTGACAGAGCTGGCCCACCTGTCGGGACGGCTGCCGCGCTAACGGCTAACGGCCCACACGTCAGCACCAACCTT
CTTCTTCCTCCTCTTCTCCTTCTTGTTGGCATTTCCTCGAACACCTTACCAGCAGCAGAGCAGGACACTGGCGTCAGCTA
AATCAATCGATGCTGCCACTCGCCGAGGACCTCCTCCTTGCGCCCCGGTGCATCGAGCCGCGGATCTGGTAGCCACCATC
ATCCCTGCACGCCACCGGCGTGGATCCGGTCACCACCACCGTCTCCATCATGCTGCACAAGCAGCAGGCCGCGGCACCGT
CCAGATGCGGGAGAGTAGCAGCAGCATGCAGCGGCGTCAGTCAGATGTGGGAGACCAGCGACCGCGAGCCCCGACAGCGG
AGGGTGGCGGAGGTATGCGCCGAAGCCCCAGGCGTCCTCCAGCATCATCATCACGGAGGCGACGCGCCGGCGAGACCACC
TTGGCTTGGACCGGGAGGAGGGAAGCGACCACAACCACAACGCTAGGTTTTGGCCACGACCAGGAGGCGGACGACTGCTG
CGTCGGTGAAGACAGCCGCCCTCCCGGCCGCTCTGGTTGGTTGCCCGCGGGTGGCTCGTCGCGCGTGACGGCATGAAGCA
AGCATCACGTTTCGCTGCCGCGCAGACAAGGCCACATGAAGCAGGGAGCAGGAGGAGGAGGAAGAAGGTCGCCGGTGCCA
CAGGCTGCCGCTGCTCACCGGCGTCGATGCGTCGGCACGGTGGTGCTGCCCGATGCACATAAGGTGCTTGTTGAAATGTC
AAACAGAGAAGAAGGGAAGGAAGAAGAAGGTTGATGATGACGTGTGGGTCCCATTTGTCATAACGGTTAACTTCACGGTC
AAAATAAACAGAGTTGACTTTGCTGCCGGTCCCACATGTCATAAACAAGTTTAAAATCATAAAAACGGTCATCAACTCAA
TTTGGTAGTTTTTTGTCACAAAATTAGTATTAATCTGGAGTTTTCGGTCAGTTTTCAAAATGTGGTAGTTCTGTGGGACG
GATACGTGAAATGTGGTAGTTTTTTTGTCAATTAGTCCTCTAAACATGCATATATGTTTTCCCTAAT-A----ATTAGAT
CCTTTTCTGAAAAAAT-TGTGGCTAGACTCAACGGTTTGCCTAACGTTGATCTTTTCTGGCATATCTAGACACACGTGGC
CGACTTTGTGTTGCTATGCGTTGGACGGTACAGTGGCATCCCCAACATTCCAACTTTCCCGCCGGAGAAAGGGCCGGAGG
CCTTTAATGGCACGGTGATCCACTCCATGGATTACTCCAACATGGACGATGCAAAAGCCACTGAGCTCATCAAAGGTAAA
CTCGTCACCGTCGTCGGCTACCAAAAGTCTGCTCTCGATGTCGCCACAGAGTGCGCAAATATGAATGGCCCAACACATCC
TTGCACAATGATTATTCGGACAAAGAGATGGATCATCCCTGACTTATATGCTTGGGGTGCCCCGGTTCCTTTCTTGTACT
TCAATCGCTTGTCCGAACTACTAGTTCACAAGCCAGGAGAGGGGCTGCTCCTTAGCCTGCTGGCTACCTTCTTGTCACCC
TTGGTACGTATATAATGGCCACTGTATTTTTTATAT--------------------------------------------
---------------------------------------------GCTACTAAGGGCTCCTTTTCATGCATTAATTTAAT
TTGATCAGAGATGGATACTCTCAAAGTTTGTTGAGAGCTACTACATGTGGGCGGTGCCCATGAGGAAGCATGGCATGATG
CCGGAACACAGCTTCTTCCAAGCTCTC-AGCTCATGGCTGATTGCAATAATGCCGGACAAATTCTACGACAATGTGGAGC
AGGGAAGCATTATCCTCAAGAAAGCAAACGAATTTATCTTCTGCAAAGAAGGTGTCATCATACAAGGCGAGCCCGTGCCG
ATCAAGAGCGACGTCGTGATCTTTGCGACCGGGTACAACGGGGATCAGAAGCTCAGAGAGTTGTTCACCTCACCTCTGTT
CAAAGAGATCGTTGTTGGCATGCCAGCTACTGCGGTCCCTCTCTACAGGTTCCTTTCAACCCTTTCCCTTTCATTTTAGT
CAACTGACCTAGTAGTTGATACG---TATATCAATGCAGCACCATTAACTAACCGTAGTTCTTACGGAATGTGACAGGCT
ATGTGTTCACCCCAGGATTCCTCAGCTAGCAATCATTGGCTACTCAGAGAGCATGGGAGATCTACACACCTCGGAGATAC
GGTCCAAA-TGGCTGGCGCATTTCCTTGATGGGGCATTTCGTTTGCCTGCCATAAGATCAATGGAGGAAAATGTGAAGGA
ATGGGAAGCATACATGAAACGCTACTCGGGCGAGTACTTCCGTCGATCTTGCGTCGCTTCTGTCGGTATCTGGCACAACG
ACCAGCTGTGCAAGGACATGGGGTGTGAGCCTAGGAGGAAGAAGGGATTTCTGGCTGACTGGCTGATTCCCTATGAACCT
GCAGATTACGCAGGTGTCAATCTGAGGAACTAGAATAACAACCAATTGTTTGTATGTCTGACGAACTGCGTCAAACTAGC
GGTGGCTGCTGCAACATTGGAAGATTATCCCTTTGCATACTATATTGTTGTCGTGGAAGTAGCCCAGCTAATAAATAAAA
TCATGCTTATTCACCAAAGGCTAGTCTAGCGACATGTTTCTCGTTGAGTTGGCTTAAATGATGGAATTGTTATATCCTTA
AGCCGCAACTTTGAAGG---CCCGTAGCCGAAAATACAACTGTGAACCTGGGAGCGTGCGCATCCGAATTGAAAGATAAA
ATAAAATATAGTTAAATACT------------------------------------------------------------
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>chr1D_938
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-------------------------------------------------------------TTTCATGCATTAATTCAAC
TTGATCAGCGATGAATGTTATCAAAGTTTGTTGAGAGCTACTACATGTGGGCAGTGCCCATGAGGAAGCATGGCATGGTG
CCGCAACACTGCTTCTTTCAAGCTTTTAAGCTCATGGCTTATTGCGATAATGCCAGACAAATTCTACAACAAGGTGGAGC
AGGGAAGCATTAGTCTCAAGAAAGCAAAAAAAATTAGCTTCTGTAGAGATGGCATCATTGTACAAGGTGAGTCCGCACTG
ATCAAGAGTGACATTGTGATCTTTGGGACGGGATATAATGGAGATCAGAAGCTCAAAGAGTTGTTCGCCTCGCCTTTGTT
CAGAGAGATCGTTGTTGGCACGCCATGTACTGCAGTTCCCCTATATAGGTTCCTTTCAACCCTTTTTAAT---TTTTGGT
CAACTTGCATGAGCTATGTTATACCCACTT---ATGTAGCACAATTAATTAACCATAGTTGTTATA-AATGTGACAGGCT
ATGCGTCCACCCAAGGATTCCCCAGTTAGCAATTGCTGGCTACTCCGAGAGCATGGGAGATCTACACACCTCGGAGATAC
GGTCCAAAGTGGCTGGTCCATTTTCTCGATGGGGGCTTTCGATTGCCTACCATATCATCAATGGACGAAAATGTGAAAGA
GTGGCATGCATACATGAAATGCTACTCGGGGGACTACTTCCGTCGATCTTGCGTCAGTTCTGTCGGCATATGGCACAATG
ACCAGCTATGCAAAGACATGGGTTGTGAGCCTAGGATGAAAATTGGCTTTCTGGCAGACTGGGTGGTTCCCTACGAACCT
GCAGATTATGCAGGTGT---------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSS---------------------------------------------------------------
------------S--------------S----------------------------------------------------
--S-----------------S-----------------------------------------------------------
---------------------------------------S---------------S------------------------
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---------------------------------------------------------------------SSSS----S--
---------------SS---------------------------------S-----S-------------S--S------
---------S--------------------------------S----------------------S--------------
--------------------------------------------S-----------------------------------
---------------------------------------------------------------------S----------
---------------------------------------------S-----------------S----------------
----------------------------------------------------------S---------------------
---------------------------------SSSSSSSSSSS------------------------------------
---------------------------------S-S------------S----------S----S---------------
-------------------S------------------------------------------------------------
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----------------------------------------------S---------------------------------
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-----------------------SS-------------------------------------------------------
---------------------------------------------S----------------------------------
---------------------------------------S----------------------------------------
------S-----------------------------------------------S-------------------------
----------------------S---------------------------------------------------------
-S-----------------------------------------------------S------------------------
-------------------S---------------------S--------------------------------------
--S-----------------------S------------------------------------------------S----
-------S--------SSSS---S-----------------S--------S----S---------------------S--
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1746
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----------------------------------------------ATTCCAACTTTCCCACCGGC--------------
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>reverse_3535
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--------------TAAAACCATTTTGCCGGGCG----------------------------------------------
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