>input_sequence_68970
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-------------------------------------ATGGCCGGCTGCGGAGAGGACCTGAAGCTGTTGGGCATGTGGG
CGAGCCCGTTCGTGGTGCGGGTGCAGATCGCGCTCCGCCTCAAGGGCCTCAGCTACGAGTACATGGAGGAGGACCTGCAG
AACAAGAGGGAGCTGCTCCTGAGGTCCAACCCTGCCCACGGCGGCAAGGTGCCGGTGCTCATCCACAACGGCAAGCCCGT
CTGCGAGTCGTCCGTCATCCTGCGGTACATCGACGAGGCCTTCTCCGGCGCCGGGCCCTCCCTCCTCCCCGCCGACGAC-
--CCCTACGGCCGAGCCGTCGCTCTCTTCTGGGCCGTTTTCATCGACGACACGGTAGGTACATATTGCTTGAG-------
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-------------------TA----CTACCTCACTCTCACATGGCCGCGTTCATGTA--TA---CCGTTTTCAATATGCA
GCTGTTGAAGGCGCCGAGCCAGGCGTTGAGAGTCGCGACGGGCGAGGAGAAGGAGGAGGGGAGGAAGAAGGCGGCCGCGG
CCATGGAAACCTTGGAGGGGGTGCTGAGGGATTCCGAGGCCAAGTTCTTCAGCGGGAGGGACTGCCCTGGTCTCGTGGAC
GTCATGCTCGGCGGCCTCCTTGGCTCGATGCGCGCATCTGAGGAGATGGGTAGGCTCCAGACCTTCGACTCGACCACCAC
CCCGCTCCTGGCCGCTTGGGCGGAGCTCTTCTGCACGCTGGACGCGGTGGCGCCGGTCATGCCGCGCGTGGAGAGGCTCG
TTGAGTATGCCGAGGCGATGCAGCAGCCTCGCACCGCCGTGTCCCGCACCACCAGCTGA---------------------
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>chr5A_1_TraesCS5A01G021700
AGGGGGAAAAGGTGATCATTTCTGCCTCAGTTAATATTGATCGGATCCGAGGGAGTAGTATATATTGTTTAGAAAGAAGA
AAGAAATAAACATGTGATGAG----TGACGGAGATGACGGAGCACCACCCCTCATCGTGTATGTG--TATAACTGGGGCA
TGACCCAGAAGGCAAAACATGTATAAGA--ATATATATAAGTGGGGCGCCCACGCTGCAATAAGAACTACAGTCGTAAAT
CTCCTCACTTGTTTGTCTCTTTCCTTTTCATCATCATTTATACAGTAACTTACTCCCTCCGTCTCATAATATAAGAACGC
TGTTGACACTATA-GTAGTGTAGAAAACGTTTTTATATTATGGGACGAAGGAAGTATCATTTGTTTGTCTCTTTACTTTT
CATCATCCCACAACACGTGCGAGCACAGCGCTTCGTTCCTCTGCACACCAGAGACAGCTCTAGGCCTAACTGAATGGAAG
GCTCGCCGCCAGAGCTATTCTAGTGTAAGTATTACTCAATAATTTGATCTGTTCATGCCAACAGGTTTGATTCAGATACA
TGCTCATTCATGCCAACTTTTCTGTTCAGTTCAGGTTAAATACCCAAAGAGACAGGACTTTAAAAGAGAAAGAAGATGAG
AGACAGAGAACAACAGGTTAGGTTAGATTCAGATACACGCGCATCCATGCCAACTCCTCTGCTCGATTCTGTTGTGGGTT
GCACGAGACGTCACAACGATACTG--------------------------------------------------------
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-------------------------------------------------TATCAGATTATATAGTGTACACAAGGTAAGC
ACGAGACGACACACGATACTATTGGTTTATACTATCGTTCTACCCGGCGTTTCTTCTTT--AAAAAGGTTACCCGTGAAT
TATCTTGCACAGCACAAGACGTGACACAATACTATTAGTTTATTCTACTATATGAGTGATACTTG---------------
--------------GTCAA--AAGATCAATCAACAAGGCCGGCAATTAAGAAAGGA-----GCAAAGGAGACCGATGTTG
AGAGAGTAGCAAAGCAAAGCAG-----CAGGAAGGGAATGGCCGGCTGCGGAGAGGACCTGAAGCTGTTGGGCATGTGGG
CGAGCCCGTTCGTGGTGCGGGTGCAGATCGCGCTCCGCCTCAAGGGCCTCAGCTACGAGTACATGGAGGAGGACCTGCAG
AACAAGAGGGAGCTGCTCCTGAGGTCCAACCCTGCCCACGGCGGCAAGGTGCCGGTGCTCATCCACAACGGCAAGCCCGT
CTGCGAGTCGTCCGTCATCCTGCGGTACATCGACGAGGCCTTCTCCGGCGCCGGGCCCTCCCTCCTCCCCGCCGACGAC-
--CCCTACGGCCGAGCCGTCGCTCTCTTCTGGGCCGTTTTCATCGACGACACGGTAGGTACATATTGCTTGAG-------
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-------------------TA----CTACCTCACTCTCACATGGCCGCGTTCATGTA--TA---CCGTTTTCAATATGCA
GCTGTTGAAGGCGCCGAGCCAGGCGTTGAGAGTCGCGACGGGCGAGGAGAAGGAGGAGGGGAGGAAGAAGGCGGCCGCGG
CCATGGAAACCTTGGAGGGGGTGCTGAGGGATTCCGAGGCCAAGTTCTTCAGCGGGAGGGACTGCCCTGGTCTCGTGGAC
GTCATGCTCGGCGGCCTCCTTGGCTCGATGCGCGCATCTGAGGAGATGGGTAGGCTCCAGACCTTCGACTCGACCACCAC
CCCGCTCCTGGCCGCTTGGGCGGAGCTCTTCTGCACGCTGGACGCGGTGGCGCCGGTCATGCCGCGCGTGGAGAGGCTCG
TTGAGTATGCCGAGGCGATGCAGCAGCCTCGCACCGCCGTGTCCCGCACCACCAGCTGAAAGCGGAAAGATGAGCTCTGC
GCACAGTCGTCTGTTTGTCCTGCAATAAGCGCGGCTTGTCAAGAAAATAATGCTCTCTTATTTTTGTATGGATGAGTGTT
GGTATAAAACTATTGTGTTCTCAAAATACTTTAAATCTCTAGTACTTATAAAAAAACCGTAAGGTTCTGTTTTATCTTTC
TTTCCATCTCTCTTTTGTCCAACTTTTCCCGTATAGTAATCAATCATCTTAATTTACTTACTTTTTGAATCAGTTTTGAT
TTAATTTAGTTACCCAACTTCTGATCAAAATATAAGGCAAATCATCGGCAGAATTTGATAAGTATTTAGTTAAACAATCG
CATACTATGGGCAGGTAAGGGGCTGTTTGGTTTTAGGCCTAGCATTGTCACACTTCGCCACACATTTTTGCTAACCTTGC
CTAACCTTAGTTCATCAAAATGAAAGCCACAAGTTGGCAAGCCTAAGGAAATCTTACCACACTTTTTGTGTGTATGCCAT
GTGGGGCTCAAGTGTGGTCTGCCTGTGGCTTGAACCAAACACTCACCTAAGTTAGTCAAACTTGCCTACAACCTTTGGCA
AAGTTAGTCACAAACCAAACAGCCCCTAAATCATTTCTGACTGAAATATAAGATAAATCACGGACATAATTTGATGAATA
TTTATTTACACAGTCATATATTATGGGCAGGTAAATCACAAGCTAACACACTAGAATATTTATATTCCGTTGCAAGCACA
GGCATTATTCTAGTTGAAGAAAAAAGAGATACATAAAGCAGATACATTTCTTTCACACATTTTCACTTCCATCTGCCCCA
CATACGTGTGTCTGTCAGTATATATTTTCCAGATGGACTGGAAAATCTTCATGACCCCAAGTGATATGAGCATGCCACGT
--CGCATGAGCAGAGAGATTGGACAAGTCTTCGTTTATCGACAAAATTTGTTCTTTTGCTGGATATATTTTAG----TGA
GAGGACGGCATGCTGCCCCTGATTA
>chr5D_23
----------------------TGCATCAATTAATATTGATCGGAC-----GGAGTAGTATATATTGTTTAGAAAAAAGA
AAGAAATAAACATGTGATGATGAGTTGACGGAGATGACGGAGCACCACCCCACATTGTGTATATGTATATAACTGAGGCA
TGACCCAGAAGGCAAAACATGTATAAGAATATATATATAAGTGGGGCGCCCACGCTACAATAAGAACTACAGTTGTAAAT
CTCCTCGCTTGTTTGTCTCTTTCTTTTTTATCATCATTTATACAGTAACTTACTCCCTCCGTCCCATAATATAAGAACGC
TGTTGACACTACAGGTAGTGTAGAAAACGTTCTTATATTA-GGGACGGAGGGAGTATCATTTGTTTGTCTCTTTACTTTT
CATCATCCCACAACACGTGCGAGCATAGCGCTTCGTTCCTCTGCACACCAGAGACAGCTATAGGCCTAACTGAATGGAAG
GCATGCCGTCAGAGCTATTCTAGTGGAAGTATTACTCAATAATTTGATCTGTTCATGCCAATAGGTTTGATTCAGATACA
TACTCATTCATGCCAACTTTTCTGTTCAGTTCAGGTTAAATACCCAAAGAGACTGGACTTGAAAAGAGAAAGAAGATGAG
AGACAGAGAAGAACAGGT-----TAGATTCAGATACACGCGCAGTCATGCCAACTCCTCTGCTCGATTCTGTTGTGGGTT
GCACGAGACGTCACAACGATACTG--------------------------------------------------------
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-------------------------------------------------TATCAGATTATATAGTGTACACAAGGTAGGC
ACGAGACGTCACACGATGTTATTATATAGTGTA-----------------------------------------------
----------------------------------------------------TAAGTGGTAGCAGTACCGCGCTTGGTCA
TCGAGTCCTTTGAAGTCAG--AAAATCAATCAACAAGGCCGGCAATTAAGAAAGGAAAGGAGCAAAGGAGACCGATGTTG
AGAGAGTAGCAAGGCAAAGCAAAGCAGTAGGAAGGGAATGGCCGGCTGCGGAGAGGAACTGAAGTTGCTGGGCATGTGGG
CGAGCCCGTTCGTGGTGCGGGTGCAGATCGCGCTTCGCCTCAAGGGCTTCAGCTACGAGTACGTGGAGGAGGACCTGCAG
AACAAGAGCGAGCTGCTCCTCAGGTCCAACCCTGTCCACGCCGGCAAGGTGCCGGTGCTCATCCACAACGGCAAGCCCGT
CTGCGAGTCGTCGGTCATCCTGCGGTACATCGACGAGGCCTTCTCCGGCGCCGAGCCGTCCCTCCTCCCCGCCGACGAC-
--CCCTACGGCCGAGCCATGGTTCTCTTCTGGGCCGCTTTCATCGACGACACGGTAGGTGCATACATGTTGC--------
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------------------TTGAGTACTACCTCACCCTCACATGGCGGCGTGCGTTCATGTATACCTTTTTCA---GTGCA
GCTGTTGAAGGCGCGGAGCCAGGCGTTGAGAGGCGAGACGGGCGAGGAGAAGGAGCAGGGGAGGAAGAAGGCGGCCGCGG
CCATGGCAACCTTGGAGGGGGTGTTGAGGGAGTCCAAGGCGAGGTTCTTCAGCGGCAGGGATGGACCCGGCTACCTGGAT
ATCATGCTCGGCAGCCTCCTCGGCTCGATGCGCGCGACGGAGGAGATATGTGGGCTCCAGACCTTCGACCCGACCACCAC
GCCGCTCCTGGCCGCATGGGCGGAGCTCTTCTGCGCGCTGGACGCGGTGGAGCCGGTCATGCCGCGCGTGGAGAGGCTCG
TCGAGTATGCCGAGGCGAC---GCAGCCTCGGACCGCCGTGTCCAGCACCACCAACTAAGAGC----AGATGAGCTCTGC
GCGCAGTCGCGTGTTTGTTCTGCAATGAGCGCGGCTTGTCAA--------------------------------------
--------ACTATTGTGTTCACCAAATACTTTAAATT-------------------------------------------
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----------------AAGAAAAAAAGGATACATAGAGCTGATGCATTT-TTTGACACATTTTCACTTCCATCCGCCCCA
CATACGTGTGTCTGTCAGTATATATTTTCCAGATGGAAAGGAAAATCTTCACGACCCCAGGTGATATGAGCATGCCACGT
CGCGCATGAGCAGGGAGATTTGACAAGTCTTGGTTTCTCGACAAAATTTGTCCTTTTCCTGGATACATTAGATCTAATGA
GAGGACGGCATGCTGCCCCTGATTA
>chr5B_616
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----------------------------------------------------------------AGAGACAGAAGATGAG
AGACAGAGAACAACAGGT-----GAGATTCAGATACATGCTCGTTCATGCCAACTCCTCTGTTCGGTTCAGGTTAAATAC
CCACACGCCGCCAGCCTGGCCATAGGCCACACACGTTCGCACGTGTTAAAATTATGTGTCGAATATATGTGTACGAGTTG
TGCTACGGTTGAACTTGTAATTAGCGGAGGGCTAGGTGTTTGAGTCATACACGTGTGATATGAAAATAGACTTCAAACAA
GTTGTAAGCTAATTAAGTTACAGATCACGAGAGGGAAGGTCCGAGCCGGTCGTGACGCAGTGGTCAAAGTGCTGTTTGAT
TTGTTGTTTTTGGAAAGGAGGATCACCCCCGGCCTCTGCATTCGAAAGATGCATGCGGTCATAAAACGTTGTTTGATGGC
TTTAGAGGGCTTATATCAGGTTATTTATTTATTTTGGCCTCTGCAAGTATATCAGGTTATATAGTGCACAGGAGGCAAGC
ACGAGACGTCACACGATATTATTATATAATGTATGAGAC-----------------------------------------
--------------------------------------------------TATGAGTGGTAGCAGGTACGTGCTTGGCCG
GCAA----TTTAAAGTCAA--AAAATCAATCAACAAGGCCGGCAATTAAGAAAGGA-----GCAAATGAGCTCGATGTTG
AGCGAGTAGC----CAAAGCAAAGCAACAGGAAGGGAATGGCCGGCTGTAGAGAGGAGCTGAAGCTATTGGGCATGTGGG
CGAGCCCATTCGTGGTGCGGGTGCAGATCACGCTCCGCCTCAAGGGCCTCAGCTACGAGTACGTGGAGGAGGACCTGCAG
AACAAGAGCGAGCTGCTCCTGGGGTCCAACCCTGTTCACGGCGGCAAGGTGCCGGTGCTCATCCACAACGGCAAGCCCGT
CTGCGAGTCGTCGGTCATCCTGCAGTACATCGACGAGGCCTTCTCCGGCGCCGGGCCCTCCCTGCTCCCCGCCGATGAC-
--CCCTACGGCCGAGCCGTCGCTCTCTTCTGGGCCGCATTCGTCGACGGCACGGTAGGTCCATATTGCTTATTACTCTCC
CTGTTTCTTAATACTCCCTCCATCCAAAAAATATTTGTCATCAAAATGATTAAAAATAGTTGTATCTATCCCTTTTATTC
ATTTTGATGACAACTATTTCCGAACGGAGGGAGTATAAGTCTTTGTAGAGATTCCACTAAATGGACTACATACGGAGCAA
AATAAATGAATCTAAACTTTAAATGCATCTATATACATCTTTATGCGATTTACAGTAAAATCTCTATAAAGACTTACATT
TAGGAACGGAGGGAGTAGTTA----CTACTTAACCCTCACATGGCCAAGTTCATGTA--TA---CGTTTTTA---ATGCA
GCTGCTGAAAGCGCGGAGCCAGGCGTTAAGAGGCGAGACAGGCGAGGAGAAGGAGGAGGGGAGGAAGAAGGCGGCCGCGG
CCATGGAAACCTTGGAGGGGGTGTTGAGGGAGTCTGAGGCCAAGTTCTTCAGCGCGAGGGACGGCCCCGGTCTCGTGGAC
GTCATGCTCGGCGGCCTCGTTGGCTCGATGCGCGCGACGGAGGAGATGTGTGGGCTCCAGACCTTCGACCCGACCACCAC
GCCGCTCCTGGCCGCATGGGCAGAGCTCTTCTGCGCGTTGGACGCGGTGGCGCCGGTCATGCCGAGTGTCCAGAGGCTCG
TCGAGTATGCCGAGGCGATGCAGCAGCCTCGCACCGACGTGTCCAGCACCACCAACTGA---------------------
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>chr5D_806
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---------------------------------------CTACCCGGTGTTTCTTCTTAAAAAAAAGGTTACCCGTGAAT
TATCTTGCACAGCACCAGACGTGACACGATACTATTAGTTTATACTACTATATGAGTGGTAGTACGTACGTGCTTGGTCG
TTGAGTCCTTAAAAGTAAAAAAAATTCAATCAACAAGGCCGGCAATTAAGAAAGGA-----GCAAAGGAGACTGATGTTA
AGAGAGTAGCAAAGCAGTAC------GTAGGAAGGGAATGGCCGGCCGCGGAGAGGAGCTGAAGCTGCTGGGCATGTGGG
CGAGCCCGTTCGTGGTGCGGGTGCAGATCGCGCTCCGCCTCAAGGGCCTCAGCTACGAGTACGTGGAGGAGGACCTGCAG
AGCAAGAGCGAGCTGCTCCTGAGGTCCAACCCTGCCCACGCCGGCAAGGTGCCGGTGCTCATCCACAACGGCAAGCCCGT
CTGCGAGTCGTCGGTCATCCTGCGGTACATCGACGAGGCCTTCTCCGGCTCCGGGCCCTCCCTCCTCCCCGCC---GAC-
--CCCTACGGCCGAGCCGTCGCTCTCTTCTGGGCCGTTTTCGTCGACGACACGGTAGGTGCATACATAATGC--------
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------------------TTG----CTACCTCACCCTCACATGGCCGCGTTCATGTA--TATACCGTTTTCA---GTGCA
GCTGTTGAAGGCGCGGAGCCAGGCGTTGAGAGGCGAGACGGTCGAAGAGAAGGAGGAGGGGAGGAAGAAGGCGGCCGTGG
CCATGGAAACCTTGGAGGGGGTGTTGATGGAGTCCAAGGCGAGGTTCTTCAGCGGCAGGGATGTACCCGGCTACCTAGAC
ATCATGCTCGGCGGCCTCCTCGGCTCGATGCGCGCGACGGAGGAGATGTGTGGGCTCCAGACCTTCGACCCGACCACCAC
GCCGCTCCTGGCCGCATGGGCGGAGCTCTTCTGCGCGCTGGACGCGGTGGAGCTAGTCATGCCGCGCGTCGAGAGGCTCG
TCGAGTATGCCGAGGCGATGCAGCAGCCTCGCACCGCCGTGTCCAGCACCACCAACTGA---------------------
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>chr5D_1091
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-----------------------------------------------CTTAGCCACGAGTACGTGGAGGAGGACCTGCAG
AACAAGGGTGAGTTGCTCCTGAGGTCCAACCCTGTCCACGGCGGCAAGGTGTCGATGTTCATCCACAACGGCAAGCCTGT
CTGCGAGTCGTCCGTCATCCTGTGGTACATCGACGACGCCTTCTCCGGCGCCGGGTCCTCCCTCCTCCCCGCC---GACG
ACCCCTACGGCCGAGCCGTCGCTCTCTTCTGGGCCGCTTTCGTCGACGATATGGTAGGTGCATACATAATGC--------
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------------------TTG----CTACCTCAACC-CAGATGGCCGCGTTCATGTA--TATACCGTTTTCA---GTGCA
GCTGTTGAAGGTGCGGAGCCAGACGTTGAGAGGCGAGACAGGCGAGGAGAAGGAGGAGGGGAGGAAGAAGCCGGCCGTGG
CCATGGAAACCTTGGAGTGGGTGTTGAGGGATTCCAAGGCGAGGTTCTTCAGCGGCAGGGACGAACCCGGTTACTTGGAC
ATCGTGATCGGTGGCCTCCTTGCCTCGATGCGTGCATCGGAGGAGATGGGTGGGCTCCAGACCA----------------
----CTCCTGGCCGCATGGGCGGAGCTCTTCTGCGCGCTGGACGCGGTGGAGCCGGTCATGCGGAGCGTCGAGAGGCTCG
TCG-GTATGCCGAGGCGATGTAGCTGCCTCGCACCACCGTGTCCAGCACCACCAACTGA---------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSS---S---S---------------SSSSSS------------------------S----
--------------------S------------------------------S---S------S------------S----
--------------------------------------------------------S----------------S------
------S----------------S----S----------------------------------S----------------
-----------S-------------------S--------S------S---S----------------------------
-------------------------S---------------------------------S--------------------
--SS----S----------------S-----------------------------------S------------------
-S---------------------------------------------------S------S-------------------
------------------SSSSS---------------------S-----------------------------------
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--------S---------S----SSS-S--SSSSSS-SS--------S----------S---------------------
---------------S-----------S---------------S--------------S--S-S----------------
-----------------------S--------------------------------------------------------
---------------------S-----------------------------------S----------------------
--------------------------------------------------------------S-----------------
--------S-----------------------------------------------------------------------
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-----------------------------------------------------------S-----------SS-------
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----------------------------------S------------------------------SS----SSSS-----
--------------S-----------------S--S--------------------------------------------
-----------------------S--------------------------------------S----S------------
--------------------------------------S------------S-----------------S----------
S--------------S------------------S---------------------------------------------
-S------------------------------------------S---------S----S---SSSS-------------
--S------SS-------S-------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS------------S-S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS---------SS--------S---S---S-----S---S-------------------S------
-------------------------------------SS------------S-------S--------------------
-------------S------S----------S----S--------------S-----S-------S---SS-S-------
-------------------------
>forward_460
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----------------------------------------CTGCACACCAGAGACAGCTC--------------------
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>reverse_3048
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-------TCACAAACCAAACAGCCCCT-----------------------------------------------------
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