>input_sequence_68961
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------------------------------------------------------------------------ATGGCAGC
CAAACCAGACCTGAAGTTGTTGGGCATGTCGGTGAGTCCATTCGTCATCCGTGTTCGCATGGCGCTGCACATGAAGGGCG
TGAGCCACGAGTACATCGAGCAGGACCTCTTCAACAAGAGCGAGCTCCTCCTCGAGTCCAGCCCGGTGGAGAAGAAGGTG
CCCGTGCTCATCCACGACGGCAAGCCCGTATGCGACTCGCCGGCCATCGTGCAGTACATCGACGAGGTCTGGGCCGCCAC
GGGGCCGCCGATCCTCCCCGCCGACCCCTATGAGCGCGCCGTCGCTCGTTTCTGGACCGCCTACGTGGACGACAAGGTGA
TTATTTTCTGGCACCTCTGTTTTGTGACTTCTAATATCTGAAACAGCGAATGCCAATGGTGTGGTTTCTTTCTTGCAGCT
ATTCCCTGCTTACGCTGGCACTGCTAAGGCAGCCACGGAGGAGGAGAGGACGCAACAGATTAACGAGATGTTCGCGGTGA
TGGGGCAGCTGGAGGAGGCATTTGCCCAGTGCTCAAACGGGAAGGCCTTCTTCGCCGGCGACTCCATCGGCAACCTCGAC
ATCGCCGTTGGATGCAATCTGCTCTTGCTCGAGGTGCTACGCAGTATGTATGGCGTGGAGTTCGTCGACACTGGGAGGAC
CCCGCTCTTGGCAGCGTGGGCGAAGCGGTTCGGGGAAACCGATGCGGCGAGGGAGGTGGTGCCCGACGTGCACGTCGCCG
TGGAGTACGCCAAGAAGCGTCAGGCTTATTGGGCTGCTGCCGCGGCTACAAAGTGA------------------------
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>chr1D_1_TraesCS1D01G190500
TACCATGGTATTTTTAGAAACAACGGTTTAAAATACTTTGATGTGTTTGGCATCAACAAATACTCTGGTTTACAAAACTG
TAGTATCTCGAAAACCATGGTTTTTT-ACAGTAAAAAAAA----AGGTCCCGACCTTTTTTTTCTAAACTGAGAAACGAC
CGCGTCTCGTTGGTCCTTCAACTCCATCTTTCCGGCCGTCAA-CAAATGTGATTCATGCATGTTTGTTGTAGCTATGAAT
AACAATTCAAGCTAAGCACATGGGAAGGAAGGTCGTACGTGCCCTTGTATGCCTACTGATCTTCTCTGTCGTTGATCTCT
CTTCAATTTGTAGTTGTATCAGGCAGCCTGTTGAGTTAGCACAACACTCCCACCTCCTGTCTGTCGTTGCCCGTCTCTGC
TCAGCGCCGCCGCGACCTCCCTGGCCCCCTTGCGCCACTGCTCCCTCGCACACTCTGGATGTGCGAGCGGCAGCCATTGG
CCTCCATAGCGTACAGGCACATGTCGACTTGTTCGCAGATATGGAATGGCTGCATGTGTACAGCAGCCGTTAGCACAAGT
TGATCAGATCGTGTAGCTCCTTGAGTGTAGCTGAGTTTGGTCCAGCTTGATACCTCGAGGGTTATCCATGCAACCTAACA
ACCGGTGAGAATGGGAGGAAACTGAGAAAAAAGACGGATTTGGCAAACTAACAACTAACAAAGAGTAAACATGCATGGAT
GGATAATGAGATGGACTCTTGAAGTCCTTGAAGACACACTCAACACCAATCACCAACTACTCTCACGCCATTTATGGAAA
ACTGTTGACCAATCGCTGCGATTTGATCGCATGATACGTCACTGGTGATGCACTCATGCACGTCGACCCGTAGTACACTC
CCCATGGCTGCAA--------------------------CTCCTCATTTCAGTCTTTCCTTCCATGCTATATAAACACCC
AAACTGATGTTGTTCTAGCACAGACGCGAGCGCGTTAAACGAGAGAAGAACAGAGAGACAGATCAGACAACAATGGCAGC
CAAACCAGACCTGAAGTTGTTGGGCATGTCGGTGAGTCCATTCGTCATCCGTGTTCGCATGGCGCTGCACATGAAGGGCG
TGAGCCACGAGTACATCGAGCAGGACCTCTTCAACAAGAGCGAGCTCCTCCTCGAGTCCAGCCCGGTGGAGAAGAAGGTG
CCCGTGCTCATCCACGACGGCAAGCCCGTATGCGACTCGCCGGCCATCGTGCAGTACATCGACGAGGTCTGGGCCGCCAC
GGGGCCGCCGATCCTCCCCGCCGACCCCTATGAGCGCGCCGTCGCTCGTTTCTGGACCGCCTACGTGGACGACAAGGTGA
TTATTTTCTGGCACCTCTGTTTTGTGACTTCTAATATCTGAAACAGCGAATGCCAATGGTGTGGTTTCTTTCTTGCAGCT
ATTCCCTGCTTACGCTGGCACTGCTAAGGCAGCCACGGAGGAGGAGAGGACGCAACAGATTAACGAGATGTTCGCGGTGA
TGGGGCAGCTGGAGGAGGCATTTGCCCAGTGCTCAAACGGGAAGGCCTTCTTCGCCGGCGACTCCATCGGCAACCTCGAC
ATCGCCGTTGGATGCAATCTGCTCTTGCTCGAGGTGCTACGCAGTATGTATGGCGTGGAGTTCGTCGACACTGGGAGGAC
CCCGCTCTTGGCAGCGTGGGCGAAGCGGTTCGGGGAAACCGATGCGGCGAGGGAGGTGGTGCCCGACGTGCACGTCGCCG
TGGAGTACGCCAAGAAGCGTCAGGCTTATTGGGCTGCTGCCGCGGCTACAAAGTGACATGATTCAGATCAGATCAGTCCG
AGTACTACGGACTGAAAATTATCTCAAGTCCATAGGATGTTGCTCCAACAATAAAGAGGACAAATCATGGATACACCATC
TTAAACATGATGATTAACTTACCTCACGGGGTTATC-CAACAATCGCTGATTTAGTTATTGATCCTAGTAGTAGTCTAGA
TACGCAACGAAGTGACATTTTTTTCAGTGTTGTGCTCTCTGAATACTTATGCTTTAATTTTCTGAATACTAGTCCTTCCG
TCCGAAATTAGTTGACACTCAAATGGATGTATCTAGACGTTGAGTGTCAACTAATTTCGGACAAAGGAAGTACAACATAA
GTCTTTAATTTATCAAGTTTTAAAAATACATAATTAATACATGAAGTTGCCACGATCTCCACTTCCACGAAACAGACTCT
CATCCTGCCTTATAAGTAAATCACAAATCAAAGCACACGGATGACCGATAGAAGGTAGTAAGGAATCTCTTAACAGAGCA
AATTCTGTGATAACCGGATAACAAAATCACAATGAAAAAGGCAAACGCGAAAAGCAAAAAACGACTATGTTGCCAAAAGA
TACATAGGAGTGCCTGAAGAAACAACGCCACATGCCCTAGGATGCCTAAACTCCACGACAACACTGTCAGGAAGGAAAAC
GACGTGAGGCGTCGCTGCTATCGAGTCCGAGACGGACAAGGGCTTTCATCCGAAACCCTAGCATCAAGAAGAGAACCACA
ACAACATTCTCAAGAGGAGAGATGGCACCCGCGGGCGACGCCGTTGTTGGCGTCAAAGCACGGAATTTTCGCTCGGTGGC
TCACCCATACTACCACAAGGCGCCTAGGCCATCTGCGGCGAGTGCGGACCTCAGAACTGGATATGGGCATTGCCACCACC
AATGGAGGAGGACGGGCCCGAGCTTCCTACCAATAAACCCCTTGCCGCCCACACGACCAAGGGGTGGTTCGTGCTGGTGC
TGGCGCTGGCGGTGGTT
>chr4A_1
TACCATGGTATTTTTAGAAACAGCGGTTTAAAATACGTTGATGCGTTTGGCATCAAAAATTACTCTTGTTTACAAAACTG
TAGTATCTCGAAAACCATGGTTTTTTCACAGTACCAAAAAAGAGAGGTCCCGACCTCTTTTTTCTAAACTGAGAAACGAC
CGTGTCTCGTTGGTCCTTCAACTCCATCTTTCTGGCCGTCAAACAAATGTGATTCATGCATGTTTGCTGTAGCTATGAAT
AACAATTCAAGCTAAGCACATGGGAAGGAAGGTCGTACGTGCCCTTGTATGCCTACTGATCTTCTCTGTCGTTGATTTCT
CTTCAATTTGTAGTTGTATCAGACAGCCTGTAGAGTTAACACAACACTCCCACCTCTTGTCTGTTGTTGCCCGTCTCTGC
TCAGCGGCGCCGTGACCTCCCTGGCCCCCTTGCACCACTGCTCCCTCTCACACTCTGGATGTGCGAGCGACAGGCGTTGG
CCTCCATAGCGTAAAGGCACATGTCGACTTGTTCGCAGCAATGGAAAGGCTGCATGCGTACAGCAGCCGTTAGCACAAGT
TGATCAAATCATGTAGCTCCTTGAGTGTAGCTAAGTTTGGTCCAGCTTGATACCTCGAGGGTTATCCATGCAACCTAACA
ACCGGTGAGAATGGGAGGAAACTGAGAAAAAA--TGGATTTGGCAAAC--------------------------------
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>chr7A_147
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-----------------------------------------------------------------------AGAAACGAC
CGCGTCTCGTTTGTCCTTCAACTCCATCTTTCCGGCCATCAAACAAATGTGATTCCTGCATGTTTGCTGTAGCTATGAAT
AACAATTCAAGCTAAGCACATGGGAAGGAAGGTCATACGTGCTCTTGTATGCCTACTGATCTTCTCTGTCGTTGATCTCT
CTTCAATTTGTAGTTGTATCAGGCAGCCTGTATAGTTAACACAACACTCCCACCTCCTGTCTGTCGTTGCCCGTCTCCGC
TCAGCGCCATCATGACCTCCCTGACCCCCTTGCACCACTGCTCCCTCTCACACTTTGGATGTGCGAGCGGCAGGCCTTGG
CCTCCATAGCGTAAAGGCACATGTCGACTTGTTCACAGCAATGGAAAGGCTGCATGCGTACAGCAGCCGTCAGCACAAGT
TGATCAGATCGTGTAGCTCCTTGAGTGTAGCTGAGTTTGGTCCAGCTTGATACGTCGAGGGTTATCCATGCAACCTAACA
ACCAGTGAGAATGGGAGGAAACTGAGAAAAAA-ACGGATTTGGCAAAC--------------------------------
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>chr2A_147
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-----------------------------------------------------------------------AGAAACGAC
CGCGTCTCGTTGGTCCTTCAACTCCATCTTTCCGGCCATCAAACAAATGTGATTCCTGCATGTTTGCTGTAGCTATGAAT
AACAATTCAAGCTAAGCACATGGGAAGGAAGGTCATACATGCTCTTGTATGCCTACTGATCTTCTCTGTCGTTGATCTCT
CTTCAATTTGTAGTTGTATCAGGCAGCCTGTAGAGTTAATACTACACTCCCACCTCCTGTCTGTCGTTGCCCGTCTCCGC
TCAGCGCCATCATGACCTCCCTGGCCCCCTTGCACCACTGCTCCCTCTCACACTCTGGATGTGCGAGCAGCAGGCCTTGG
CCTCCATAGCGTAAAGGCACATGTCGACTTGTTCGCAGCAATGGAAAGGCTGCATGCGTACAGCAGCCGTCAGCACAAGT
TGATCAGATCGTGTAGCTCCCTGAGTGTAGCTGAGTTTGGTCCAGCTTGATACGTCGAGGGTTATCCATGCAACCTAACA
ACCAGTGAGAATGGGAGGAAACTGAGAAAAAA-ACGGATTTGGCAAAC--------------------------------
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>chr2A_147
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-----------------------------------------------------------------------AGAAACGAC
CGCGTCTCGTTGGTCCTTCAACTCCATCTTTCTGGCCATCAAACAAATGTGATTCCTGCATGTTTGCTGTAGCTATGAAT
AACAATTCAAGCTAAGCACATGGGAAGGAAGGTCATACATGCTCTTGTATGCCTACTGATCTTCTCTATCGTTGATCTCT
CTTCAATTTGTAGTTGTATCAGGCAGCCTGTAGAGTTAACACAACACTCCCACCTCCTGTCTATCGTTGCCCGTCTCCGC
TCAGCGCCATCATGACCTCCCTGGCCCCCTTGCACCACTGCTCCCTCTCACACTCTGGATGTGCGAGCGGCAGGCCTTGG
CCTCCATAGCGTAAAGGCACATGTCGACTTGTTCGCAGCAATGGAAAGGCTGCATGCGTACAGCAGCCGTCAGCACAAGT
TGATCAGATCGTGTAGCTCCCTGAGTGTAGCTGAGTTTGGTCCAGCTTGATACGTCGAGGGTTATCCATGCAACCTAACA
ACCAGTGAGAATGGGAGGAAACTGAGAAAAAA-ACGGATTTGGCAAAC--------------------------------
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>chr6A_148
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------------------------------------------------------------------------GAAACGAC
CATGTCTCATTGGTCCTTCAACTCCATCTTTCCGGCCATCAAACAAATGTGATTCTTGCATGTTTGCTGTAGCTATGAAT
AACAATTCAAGCTAAGCACATGGGAAGGAAGGTCATACGTGCCCTTGTATGCCTACTGATCTTCTTTGTCGTTGATCTCT
CTTCAATTTGTAGTTGTATCAGGCAGCCTGTAGAGTTAACACAACACTCCCACCTCCTGTCTATCGTTGCCCATCTCCGC
TCAGTGCCGTTGTGACCTCCCTGTCCCCCTTGCACCACTACTCCCTCTCACACTCTGGATGTGCGAGCGGCAGGCCTTGG
CCTCCATAGCGTAAAGGCACATGTCGACTTGTTCGCAGCAATGGAAAGGCTGCATGCGTACAGCAGCCGTTAGCACAAGT
TGATCAGATCGTGTAGCTCCTTGAGTGTAGTTGAGTTTGGTCCAGCTTGATACCTCGAGGGTTATCCATGCAACCTAACA
ACTGATGAGAATTGGAGGAAACTGAGAAAAAA--CGGATTTGGCAAAC--------------------------------
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>chr1B_730
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---------------CTCTTTAAGTCGTTGAAGAGGCATTCAACACCAAATACCAACTTTTCTCACGCCATTTATGGAAA
ACTATTGACCAATCGCTGCGATTTGATCGCATGATACGTCACTGGTGATGCACTGATGCACGTCGACCCATAGTGCACTC
CCCATGGCTGCAACTCCTCATTTCAGTCAACTCAAAAAACTCCTCATTTGAGTCTTTCCTTCCATGCTATATAAACACCA
AAAATGATGTTGTTCTAGCACAGACGCGAGCACATTAAATGTGAGAAGGACAGAGAGACAGATCAGGCAACAATGACCGC
CGAAGGAGACCTGAAATTGTTGGGCATGTCGGTGAGCCCATTTGTAATCTGTGTTCGCATAGCGCTATACATGAAGGGCC
TGTGATACGAGTACATCGAGCAGGACCTCTTCAATAAGAGCGAGCTCCTCCTCGGGTCCAACCCGGTGGAGAAGAAGGTT
CCCGTGCTCATCCACAATGGCAAGCACATACGTGACTCGCCGGCCATCATGCAGTACATCCACGAAGTCTGGACCGCCTT
AGGGCCGTCGATCCTCCCTGCTGACCCCTATGAGCACGCCGTCGCTCATTTCTGGACCGCCTACATGTACGACAAGGTGA
TTATTTTCTCGCACCTCTAGTTTGTGATTTCTAATTTTGTGAACAGCGAGTGCTAAAGTTGTGGCTTCTTTCTTGCAGTT
GTTCCTTGCTTATGTTGGCACTGCTAAGAGCATCCCCAGGAG--------------------------------------
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>chr1B_1433
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------------------------TAAGGCAAGC-CGGAGGAGGAGAGAACGCAACAGATTAACGAGATGTTCGCGGTGA
TGGGGCAGCTAGAGGAGGCATTTGCCCAGTGCTCAGACGGGAAGGCCATTTTCACCGGCGACTCCATCGGCTACCTCGAC
ATCGCGGTTGGATGCAATCTGCTCTTGCTCGAGGTGCTACGCAGTATGTATGGCGTGGAGTTCGTCGACACTCGGAGGAC
TCCGCTCTTGACAGCGTGGGCGAAGCGGTTCGGGGAAACCGATGCGGCGAGGGAGGTGGTGCCCGACGTGCACATCGCCG
TGGAGTACGCCAAGAAGCGTCGAGCTTGTTGGGCTGCTGCCGCGGCTACAAAGTGACATGATTCAGATCAGATCAGTCCA
AGTACTACTGACTAAAAATTATCTCAAGTCCATAGCATGTTGCTCCAACAATAAAGAAGACAAATCATGGATACACCATC
TTAAACATGGTGTTGAACTTACCTCACGGGGTTATCCCAACAGTCGCTGATTTAGTTATTGATCCTAGTAGTAGTCTAAA
TACGCAACGAAGTGACATTTTTT-CAGTGTTGTGCTTTCTGAATACTTATGATTTAATTTTCTGAGTACTACTCCCTCGG
TTCGAAATTAGTTGACGCTCAAACGGATGTATCTA---------------------------------------------
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>SNPs
----------------------S-------------S------S------------S--S------S-------------
---------------------------------SS---------------------S-----------------------
------------------------------------------------------------------S-------------
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-------------------------------S------S-----------------------------------------
------------S--------------------S-------------S-------------------------S-S----
-------------S------------------------SS------S---------S-----------------------
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--------------------------------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS-----S-----S-------SS--S----------SS-------SS--------------------
---S--------------------------------------------------S--------------S----S-----
-------------------------------------------------S-----------------------------S
---S---------------------------S-S-----S-S------S-----------------S--------S-S--
-S--SS---------S--------------------S-----S--S---S----------S-----SS-----------S
--S-SS----------------------------S-------------------S-----S------------------S
---------------S-S-------S-S--S-S---------------S-----------S----S------S-----SS
S------S----------S--S-------------S-----------S----------------S--S------------
---------S--------SS-------S-------S-SSSS--------S---S--S-S-----S-------------S-
S----S------S-S----------------SS-S-------------S-------------------------------
----------S------------------------S-----------S-S---S-----------------S--------
-----S------------------------------------------------------------------S-------
S---------S--------------------------------------------------------------S------
---------------------SS----S---------------------------------------------------S
--------S----S---------------------S---------------------S----------------------
---------S--S-S---------------------------S-----------------------------------S-
-----------------------S------------S--------------S-------------S-----S---S--S-
-S--------------S------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_875
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-------------------------------------------------------ATGCACGTCGACCCGTAGTA-----
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>reverse_2417
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----------------AAGAAACAACGCCACATGCC--------------------------------------------
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