>input_sequence_68942
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------------ATGG---CCTCCACGATGCCGCACCGCATCGCGCTGCTCCTGCTCCTCCTGGCGTCCACGCGCGCGGC
GACCGCGGCCGGCGCCGGCGCCTGCGCGGCCGAGAAGTTCCCGGCGGGGAAGACGTACGCCAAGTGCGAGGACCTCCCGC
AGCTGGGCGCCGCGCTGCACTGGACCTACGACGAGGCCAAGTCATCGCTCTCGCTGGCCTTCGTGGCGGCGCCGGCGGGT
ACCAACGGGTGGGTGGCCTGGGCCCTCAACCCCACGGGCGAGGGCATGGCCGGCGCGCAGGCGCTCGTGGCGCTCAAGGG
CTCCGGCTCCGCCGCGCCCACCGTCAGGACGTACAACATCACCGGCTACGTGCCGCTCGGCAAGGCCTCCACGCCCATCG
CGTTCCCGGCCACCGACCTCGCCGCCGACTCCGGCAGCGGCGGCAAGATCCGGCTCTACGGCAAGCTGCAGCTGCACAGC
GGGATGAAGGCGGTGAACCACATATGGCAGGTCGGCACCTCCGTCACCGCCGGGGCCCCCGACAAGCACGCTTTCGCCGC
CGGCAACCTCGCCTCCAAGTCCAAGCTCGTCCTCTCGGGCAAAGCGGCCTCCGCGACCTCGCCTTCGCCGGCGCCCGCCC
CCATGGCCGGTGGGCCGTCCGGATCGGCCGGCAGCGACGGCGGCGCGTCGGCGACCACGGCGCCTTCCGCCGGCAAGTCC
CCGTCGGGCGCGGCCGCGGTCGGCGTGTCGGCGCCGGCACTCCTTGTGCTCGCGTTGATGGGACTCCTCGCGGTAGTATG
A-------------------------------------------------------------------------------
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>chr7B_1_TraesCS7B01G152200
CGAGGCATTCAACCAACCAACCAGCCGGTCCATGAGCGTGGAATAGTAGTTCTTTGATCCAT------------------
GCCGGAAGATATTTCACACGCATTTAACGTACTTGCCGTGAAAGATGAAAAATGATCAGTCCACATGCAACGCAAAACTT
GCAATGAAATGAGCCCACCCTCCCTCTTTGGGATTGCCTGCGTTTCTTGGGAAGTTCGGCCAGCTCCCATATGGAGATAT
CT---GTGACCATTGATTGGTTATCTTCTTTCTTTCTTTTAGGTGGCTCTGGTGGTGCGGTGTAGTGCTGCGACTGGTCC
GGCTCCGAAAGCTGTCACGTGCATGGTTGCCCGGCGTGCCGTCGACCGCGCCAAACTCGCGCCTCTTCTGCGTTGCCTCC
TTCCTCGTTTGGCACAACGGGAAT-ATATCGTGGCCGCGTCCGTGTGGCGCCTTCTGCGCCGAGGCATCGTCTTGTCTGG
CTTCAATGGCCTTCCCCTTTCGCGCCAATTCAGTGCGAGTTATCGGTAGCACAAAATACTATACAGACCATGCGTAATAA
CACTATTACAGTAGTACACTAGTACTCAGTATTTACGTCTTCAGAAATTTCGAGCTGGGCAAGTTCACCGGGTGGCCTGT
GCCCAGAAACCCATCTGCATACACTCACCATCT----------TTGATGGATTCCGTTTGAAACCCCGCCGGACATCCGT
GGCCAGCACGCGCACACCAAACTCAC-----AGGAGTCGCAACTCATTTCAACCCATTTT-----TA---ATCGCCGACA
T-TCACTGCACTGACCTAGAAAGGTTTCATTAGTCATTA-CACGTAACCAAATCCAGACCTA-GCAACGAGAGAAAACAC
ACATTTAACCACAAACCCACCTAAAATCTTCGAAAATTACGCATAGCCCCACCTCCCCTGTTATAAAA--CCTCACCCTC
ACCCGTCCTCACCCCTCCTCACTGACACTCCAAGCACTCGCACGCTCCAAGGCCTCACTCACTCACCAGTGACACCCCGA
ATCT--CGGCGTATGG---CCTCCACGATGCCGCACCGCATCGCGCTGCTCCTGCTCCTCCTGGCGTCCACGCGCGCGGC
GACCGCGGCCGGCGCCGGCGCCTGCGCGGCCGAGAAGTTCCCGGCGGGGAAGACGTACGCCAAGTGCGAGGACCTCCCGC
AGCTGGGCGCCGCGCTGCACTGGACCTACGACGAGGCCAAGTCATCGCTCTCGCTGGCCTTCGTGGCGGCGCCGGCGGGT
ACCAACGGGTGGGTGGCCTGGGCCCTCAACCCCACGGGCGAGGGCATGGCCGGCGCGCAGGCGCTCGTGGCGCTCAAGGG
CTCCGGCTCCGCCGCGCCCACCGTCAGGACGTACAACATCACCGGCTACGTGCCGCTCGGCAAGGCCTCCACGCCCATCG
CGTTCCCGGCCACCGACCTCGCCGCCGACTCCGGCAGCGGCGGCAAGATCCGGCTCTACGGCAAGCTGCAGCTGCACAGC
GGGATGAAGGCGGTGAACCACATATGGCAGGTCGGCACCTCCGTCACCGCCGGGGCCCCCGACAAGCACGCTTTCGCCGC
CGGCAACCTCGCCTCCAAGTCCAAGCTCGTCCTCTCGGGCAAAGCGGCCTCCGCGACCTCGCCTTCGCCGGCGCCCGCCC
CCATGGCCGGTGGGCCGTCCGGATCGGCCGGCAGCGACGGCGGCGCGTCGGCGACCACGGCGCCTTCCGCCGGCAAGTCC
CCGTCGGGCGCGGCCGCGGTCGGCGTGTCGGCGCCGGCACTCCTTGTGCTCGCGTTGATGGGACTCCTCGCGGTAGTATG
ATGGCATTCCCTGGCGGTAGCACGAATGAATGAGTACGTACTATAATTAGTGGAGGTGGCAGTGGGCATGGGGAGGAAGC
ATTTCTCGAACAATATA-TTGTTCCATTTTTGTCGATCGATCTTGCTATGCTGCCTATTCTTTTTCCTAATTTCGTTTGA
AATAAAAGATGGTTTGCGTACTAATTATCAT----------TATCGAGCTGTTGTTTTTAGGTAGAAGTACGTAGTACGT
AGTAACGTAGTACTGCTAGCAGTCGGTGATTATT-------------------------------GTAGTACTATTGTGG
TCGACATGTCACTGAATTTATC-TATGACTAATATAATATAATTTTTATTATCAGAGGCGCAAGTGTTTGGTAGTGCAAG
TAGTATCTCTTGCATTCTGTGCAGTGCAGTTGCCCGATCTGGCCTAGTGACACACGCTGATTCGATTTATTTAAAGCCCG
GGCACCGAGCGAGAAGCACCAGCGTCAAACTAGGGTCCCTGTCATTCGCGAGATTTTGAAATATAGTAACGC-----AAA
ATTCACGGATTAGAGTGTCACGGACACTTATTGTGTGTGAATAAAAACACATGATTTGTTGGGTTTGATGGGAAATGCAG
TATGAAGTACAAATGAATTTTTATGGTTTGCAAT-----------------------------TTCTACTAATCGAACAA
CACACCTAGAA--AAAAAACATAAGGATTTGAATCCTCCAAATTTTTCAATAATTC-----TGAATCAAAAAGGCCTTTG
CCTTTTTCCCGCGAAA--AATAGGCCTTTACCCTTCATTTTTTTTGAAGGGCATCACTTTCATTACACGTTTGATTTATT
TTTTAGTCATGAACACTGAGCAAGGAGGCAGTTGTGTCCCACATTGGCAGGTCATCAACAGGGAATACT--GCCTCTTCA
TGTGCTCATGCCA-----GTTTGTTAATGCTCCTGAGCCGGTCAGTGAGTCCAGCCCGAGACCCCGGGTAGATATTTTGT
TGACGCTCTCCTGCCAACGAGTAAACGCACAACTTGGTTTTTCTTTTTACCGAC
>chr7D_1
CGAGGCATTCAATCAACCAACCAGCCGGTCCATGAGCGTGGAATAGTAGTTATTTCTATGCCGTTCGGCGTTGGCTACAC
GCCGGAAGATATTTCACACGCATTTAACGTAA-TGCCGTGAAAGAGGAACAATGATCAGTCCACATGCAACGCG-AACTT
GCAATGAAATGAGCCC-CCCTCCCTCTTTGGGATTGCCTGCGTTTCTTGGGAAGTTCGGCCAACTCCCATATGGAGATAT
TATCAGTGACCATTGATTGGTTATCTTCTTTCTTT----TAGGCAGCTCTGGTGGTGCGGTGTAGCTGTGTGACTGGTCC
GGCTCCGAGCGCTGTCACGTGCATGGTTGCCCGGCGTGCCGTCGACCGCGCCAGACTCGCGCCTCTTCTGCGTTGCCTCC
TTCCTCGTTTGGCACAACGGGAATAATATCGTGGCCGCGTCCGTGTGGCGCCTTCTGCGCCGAGGCATCGTCTTGTCTAG
CTTCAAAGTGAGTGAGTG----------------GCGAGTTATCGGTGGCACAAAG-----TACAGACCATGCGTAATAA
AATCATTACTTGGTGCTTC--------------TACGTCTTCAGAAATTTCGAGCTGGACAAGTTCACC-----------
----------------------ACTCACCATCTCAGGCTTTGATTGATGGATTCCGTTTGAAACCCCG---GACATCCGT
GGTCAGCACACGCACACCAAACTCACGGAACAGGAGTCACAACTCATTTCAACCAATTTT-----TTTTTATCGCCGACA
T--------ACTGACCCAGAAAGGTGTCATTAGCCATTAACACCTAACCAAATCCAGACCTA-GCAACGAGAGAAAACAC
ACATTTGACCACAAACCCACCTAAAATCTTCGAAAATTACGCACAGCCCCACCTCCCCTGTTATAAAA--CCTCACCCTC
CCCCGTCCTCATC---CCTCACTGACACTCCAAGCACTAGCACGCTCCAAGGCCTCACTCACTCACCAGCGACACCCCGA
ATCCAGCGGCATATGGCCTCCTCCACGATGCCGCGCCACATCGCTCTCCTCCTGCTCCTCCTGGCGTCCACGCGCGCGGC
GTCCGCGGCCGGCGCCGGCGCCTGCGCGGCCGAGAAGTTCCCGGCGGGGAAGACATATGCCAAGTGCGAGGACCTCCCGC
AGCTGGGCGCCGCGCTGCACTGGACCTACGACGAGGCCAAGTCGTCGCTCTCGCTGGCGTTCGTGGCGGCGCCGGCGGGT
GCCAACGGGTGGGTGGCCTGGGCGCTGAACCCCACCGGCGAGGGCATGGCCGGCGCGCAGGCGCTCGTGGCGCTCAAGGG
CTCCGGCTCCGCCGCCCCCACCGTTAGGACGTACAACATCACCGGCTACGTGCCGCTCGGCAAGGCCTCCACGCCCATCG
CCTTCCCGGCCACCGACCTCGCCGCCGACTCCGGCAGCGGCGGCAAGATCCGGCTCTACGGCAAGCTGCAGCTGCACAGC
GGGATGAAGGCGGTGAACCACATATGGCAGGTCGGCACCTCCGTCACCGCCGGGGCCCCCGACAAGCACGCCTTCGCCGC
CGGCAACCTCGCCTCGAAGTCCAAGCTCGTCCTCTCGGGCAAAGCGGCCTCCGCGGCCTCGCCTTCGCCGGCGCCCGCCC
CCATGGCCGGTGGCCCGTCCGGATCGGCCGGCAGCGACGGCGGCGCTTCGGCGACCACGGCGCCTTCAGCCGGCAAGTCC
CCGTCGGGCGCGGCCGCGGTCGGCGTGTCGGCGCCGGCACTCCTCGTGCTCGCGTTGATGGGCCTCCTCGCGGTGGTATG
ATGGCATTTCCTGGCGGTAGCACGAATGAATGAGTACGTACTATAATTAGTGGAGGTGGCAGTGGGCATGGGGAGGAAGC
ATTTCTTGAACAATATATTTGTTCCATTTTTGTCGATCGATCTTGCTATGCTGCCTATTCTTTTTCCTAATTTCGTTTGA
AATAAAAGATGGTTTGCGTACTAATTATTAT----------TATCGAGCTGTTGTTTTTAGGTAGAAGTACGTAGCACC-
--------------GCTAGCAGTTGGTGATTATTGTATTTTTTTTTGCGAGAGGTGATTATTGTAGTAGTACTATTGTGG
TCGACATGTCACTGAATTTGTCATATGACTAATAAG-TATAAATTTTATCATCAAAGGAGCAAATGTTTGGTAGTGCAAG
TAGTATCTCTCGCATTCTGTGCAGTGCAGTTGCCCGATCTGACCTAGTGATACACGCTGATTCGATTTGTTTAAAGCCCG
GGCACCGAGTGAGAAGCACCAGCCTCA-TCTATGGTCCCTGTCATTCGCAAGAGTTTGAAATATAGGAATGCAAAAAAAA
AATCACGCATTAGAATGTCATGTACACTTGAT-TGTGTAAATAAAAACACATGATTTGTTGGGCTTGATGGGAAATGCAG
TATGAAGTACAAATGAATCTTTATGGTTTGCAATTTCTACTAATCTCTTGTTTCAAAAAAAAATTCTACTAATCAAACAA
CACACCTAGAAGAAAAAATCATAAGGGTGTGAATCCTCCAAAATTATTTTTAAAAATTCTTTGAATCAAAAAGGCCTTTG
CCTTTTTCCCGCAAGATGAAAAGGCCTTTACCTTTCATTTT--CTGAAGGGCATCATTTTCATTACACGTTTGATTT--T
TTTTAATCATAAGCACTGAGCAAGGAGGCGATTGTGTTCCACATTGGCAGCTCATCAACAGGGATTTCT--GTCTCTTCA
TGTGCTCATGCCA-----GTTTGTTAATGCTCCTGAGCCGGTCAGTCAGTCCAGCCCGAGACCCCGGGTAGATATTTTCT
TGACGCTCTCCTGCCCACGAGTAAACGC--------------------------
>chr7A_652
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-------------------------------------------TTGATGGATTCCGTTTGAAACCCCG---GACATCCGT
GGCCAGCACACGCACACCAAACTCG-----CAGGAGCCACAACTCATTTCAACCCATTTCTTATCTTTTTATCGCCGACA
TGTCATTACACTGACCTAGAAAGGTGTCATTAGTCATT-ACACCTAACCAAATCCAGACCTAAGCAACGAGAGAAAGCAC
ACATTTAAACAGAAACCCACCTAAAATCTTCGAAAATTACACACAGCCCCACCTCCCCTCTTATAAAACCCCTCACCCTC
CCCCGTCCTCACC---CCTCACTGACACTCCCAGCACTCGCACGCTCCAAGGCCTCACTCAC----CAGCGACACCCCGA
ATCCAGCGGCGTATGGCCTCCTCCACGATGCCGCGCCGCGTCGCGCTGCTCCTGCTCCTCCTGGCATCCACGCGCGCGGC
GTCCGCGGCCGGCGCCGGCGCCTGCGCGGCCGAGAAGTTCCCGGCGGGGAAGACGTACGCCAAGTGCGAGGACCTCCCGC
AGCTGGGCGCCGCGCTGCACTGGACCTACGACGAGGCCAAGTCGTCGCTCTCGCTGGCCTTCGTGGCGGCGCCGGCGGGG
GCCAACGGGTGGGTGGCCTGGGCGCTGAACCCCACCGGCGAGGGCATGGCCGGCGCGCAGGCGCTCGTGGCGCTCAAGGG
CTCCGGCTCCGCCGCGCCCACCGTCAGGACCTACAACATCACCGGCTACGTGCCGCTCGGCAAGGCCTCCACGCCCATCG
CGTTCCCGGCCACCGACCTCGCCGCCGACTCCGGCAGCGCCGGCAAGATCCGGCTCTACGGCAAGCTGCAGCTGCACGGC
GGGATGAAGGCCGTGAACCACATATGGCAGGTCGGCACCTCCGTCACCGCCGGGGCCCCCGACAAGCACGCCTTCGCCGC
CGGCAACCTCGCCTCCAAGTCCAAGCTCGTCCTCTCGGGCAAAGCGGCCTCCGCGACCTCGCCTTCGCCGGCGCCCGCCC
CCATGGCCGGCGGCCCGTCCGGATCGGCCGGCAGCGACGGCGGCGCGGCGGCGACCACGGCGCCTTCCGCCGGCAAGTCC
CCGTCGGGCGCGGCCGCGGCCGGCGTGTCGGCGCCGGCACTCCTCGTGCTCGCGTTGATGGGCCTCCTCGCGGTAGTATG
ATGGCAT-------------------------------------------------------------------------
---------ACAATATATTTGTTCCATTTTTGTCGATCGATCTTGCT-----GCCTATTCTTTTTCCTAATTTCGTTTGA
AATAAAAGATGGTTGGTGTACGGAGCTGTTGTTTTTAGGTATATCGAGCTGTTGTTTTTGGGTAGACGTACGTAGTACGT
AGTAT----GTACTGCTAGCAGTCGGTGATTATTGTAGTG-------------------------------CTATTGTGG
TCGACATGTCACTGAATTTATCATATGACTG-----ATATATTTTTTATCATCAGAGGAGTATAAGTGTTTGGTAGCAAG
TAGTATCTCTTGCATTCTGTGCAGTGCAGTTGCCCGATCTGGCCTAGTGATACACGCTGATTCGATTTGTTTAAAGCCCG
GGCACCTTGTGAGAAGCACCAGCGTCA-ACTAGGGTCCCTGTCATTCGCAAGAGTT-GAAATATAGGAATGCAAAAAAAA
-TTCACGGATGAGAGTGTCATGTACACTTGAT-TGTGTAAACAAAAACACATGATTTGTTGGGCTTGATGGGAAATGCAG
TCTGAAGTACAAATGGATTTTTATGGTTTGCAATTTCTACTA-----------------------------ATCAAAATA
CACACCTAGAAAAAAAA-TCATAAGGATTTGAATCCTCCGGAATTACTTTTAAAAATTCTGTAG-TCAAAAAGGCCTTTG
CCTTTTTCCCGCAAAATGAAAAGGCCTTTACCTTACATTTT--TTGAAGGGCATCATCTGATTTA----------TT--T
ATTTTATCGTAAGCACTGAGCAAGGGGGCAATTGTGTCCCACATTGGCAGGTCATCAACAGGGATTTCTAGGTGTGTTCA
CGTGCTCATGCCAGTTCGGTTTGTTAATGCTCCTGAGCCGGTCAGTGAGCCCAGCCCGAGACCCCGGGTAGATATTTT--
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>chr5A_1070
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----GCGGCCGCGGGCGGCGCCTGCAAGAGCGAGAAGTTCCCGGCCGGCAAGAGCTACGAGACGTGCGCGGACCTCCCGG
CCCTCGGCGCCGCGCTGCACTGGACCTACGACGCGGCGGCCTCGTCGCTCTCCGTGGCGTTCGCGGCCAAGCCGGCCAGC
GGCGCCGGCTGGGTGTCGTGGGGGATCAACCCCACCGGCGACGGCATGAAGGGCGCGCAGGCGCTCCTCGCCTTCAAGAG
CGGCGCCACGTACGT------CGTCAACACGTACAACCTCACCGGGTACAAGCCCCTCAGCGCGACGTCCACGCCCATCG
CGTTCAAGGCCACCGGGCTCGCCGCCGACGAGGGCGCCGGCGGGAAGGTGCGGCTCTACGGCACGCTGCAGCTGCCCAAG
GGCATGGAGTCCGTGAACCACATCTGGCAAGTGGGGTCCGCGGTGGCCGGCGGGGTGCCGGCCAAGCACGCATTCGCGCA
GGAGAACCTGGATGCCAAGGGCAAGCTCGTGCTC----------------------------------------------
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>chr5D_1070
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----GCGGCCGCGGGCGGCGCCTGCAAGAGCGAGAAGTTCCCGGCTGGCAAGAGCTACGAGACGTGCGCGGACCTCCCGG
CCCTCGGCGCCGCGCTGCACTGGACCTACGACGCGGCGGCCTCGTCGCTCTCCGTGGCGTTCGCGGCCAAGCCGGCGAGC
GGTGCCGGCTGGGTGTCGTGGGGGATCAACCCCACCGGCGACGGCATGAAGGGCGCGCAGGCGCTCCTCGCCTTCAAGAG
CGGCGCCACGTACGT------CGTCAACACGTACAACCTCACCGGGTACAAGCCGCTCAGCCCGGCGTCCACGCCGATAG
CGTTCAAGGCCACCGGGCTCGCCGCCGACGAGGGCGCCGGCGGGAAGGTGCGGCTCTACGGCACGCTGCAGCTGCCCAAG
GGCATGGAGTCCGTGAACCACATCTGGCAGGTGGGGTCCGCGGTGGCCAACGGGGTGCCGGCCAAGCACGCGTTCGGGCA
GGAGAACCTGGATGCCAAGGGCAAGCTCGTGCTC----------------------------------------------
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>SNPs
------------S--------------------------------------S---SSSSSSS------------------
-------------------------------SS------------S---S-----------------------SS-----
----------------S---------------------------------------------S-----------------
SS---------------------------------SSSS----SS--------------------SSS--S---------
--------SS-------------------------------------------S--------------------------
------------------------------------------------------------------------------S-
------S-SSSS-SSSSSSSSSSSSSSSSSSSSS-------------S-------SSSSSS-------------------
S-SS-----SSSSSSSSS-SSSSSSSSSSSSSS-------------------------S----------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS----------------------------------------------SSS---------
---------S----------------------------S---------------------------S-------------
-----S-S-----------------S-----------------S------------------------------------
-------------------------------------------S------------------------------------
S------------SSS-----------------------------------------------------S----------
---S------------------------------S---------------------------------------------
-S------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
S----------------------S-----------S--------------------------------------------
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-----------------------------------------------------------------------S--------
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-------------S------------------------------------------------------------------
--------------------------------------------S-----------------S-----------------
--------S-----------------------------------------------------------------------
------S-------------------------------------------------------------------------
----------------------------S---------------------------------------------------
----SSSSS-----------------------------------------------------------------------
----------------------------------SS-------------S--------S----S----------------
--------------------------------------------------S-----------------S-----------
---------S-----------------S---------------------S---S------------S--S----------
--------------------S-S------SS-S-----S------------------------S----------------
--------------------------------------------------------------------------S-----
------------------S-----------------------S--S-SSS---SSS------------------------
------------S-------S-----------S--------SS-------------S--------------------SS-
-----S----S-S-----------------S---------------------------------S-S-----S-------
------------------------------------------------------------------------------S-
---------------S------------SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_656
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----------------------------------------------------------------------------CTGT
GCCCAGAAACCCATCT----------------------------------------------------------------
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>reverse_2731
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----------GAACACTGAGCAAGGAGGCA--------------------------------------------------
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