>input_sequence_68930
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------------------------------------------------------------ATGTCGTCGTCGGCCATGGA
AGCGCTCCACGCCCTGATCCCGGAGCAGCACCAGCTGGACGTTGA---GGCGGCTGCGGCTGTCAGCAGCGCCACCAGCG
GCGAGGAGAGCGGCCACGTGCTGCAGGGGTGGGCCAAGAGGAAGCGATCGCGCCGCCAGCGCTCCGAGGAGGAGAACCTC
GCGCTCTGCCTCCTCATGCTCTCGCGCGGCGGCAAGCAGCGTGTTCAGGCGCCGCAGCCGGAGTCGTTCGCTGCGCCGGT
GCCTGCCGAGTTCAAGTGCTCCGTCTGCGGCAAGTCCTTCAGCTCCTACCAGGCGCTCGGAGGCCACAAGACGAGCCACC
GGGTGAAGCAGCCGTCTCCTCCCTCTGATGCCGCTGCTGCCCCACTCGTGGCCCTCCCGGCCGTCGCCGCCATCCTGCCG
TCCGCCGAGCCGGCCACGTCGTCCACCGCCGCGTCCTCCGACGGCGCGACCAACAGAGTCCACAGGTGCTCCATCTGCCA
AAAGGAGTTCCCGACTGGGCAGGCGCTCGGCGGGCACAAGAGGAAGCACTACGACGGAGGCGTGGGCGC---CGCCGCCT
CGTCGACCGAGCTTCTGGCCGCCGCGGCCGCCGAGTCTGAGGTGGGGAGCACCGGCAACGGGAGCTCCGCCGCCCGGGCC
TTCGACCTGAACATTCCGGCCGTGCCGGAGTTCGTGTGGAGGCCGTGCGCCAAGGGCAA---GATGATGTGGGAGGACGA
TGAGGAGGTGCAGAGCCCCCTCGCCTTCAAGAAGCCTCGGCTTCTCACCGCTTGA-------------------------
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>chr5B_1_TraesCS5B01G406000
AAGCACGAG-GCGAAGACCGTGCCGGCTTTCTACACGCATGTGCCAAACG----CTTCGTTTGCAGCACCGGAACCACTA
CCGTAGCCG----CCCCTTCATTTGACCCACTGTCATTTCGCGTTCGAG----TGGCCC---AAACAATCAACCCGTGAG
GTCAGCACGCACCCAT----GCACCACCCTAGATGTTTCGCGAAGACAAACACAACTCGGATGTTGCACCCTACCCTAAC
AATTCAGCTTTTTTTACCC-------AAAAGATCGACATGTCACCTAGTACGTACGCACTACGTATATACAGCTTCGAAA
-TATTTTTAGAAGGAGCCGTCCAATGAGAGTGAGGGTCAAATACGCACGACAGCCGCAGCCCGACCAGT-----------
--------------------AAACTAATCTGGAAACGGCGTTAGCGGGCCGGGCCGGGTCGGCTTTGCGTTCCGCAACCG
ACGGCGACCGCTTCCCG----CA----GTCCACAGTGACGCCGCGGCCTCCTCGGTCCGACCAGTCCTCACTCTTCTTCG
GAATCACACTCCCACCACACA----CACCCG----CTCACTAGCTCCACTTGCCCTGCCTTGCTTGCCCGCCCGGCCGTG
TCTTCCCCTCCACGTTGACCACGACTTTTTCGTTGCATGCGACCCACCTCTCG---------------TCCACCACCCAC
CACAGCG-GAGCCCAAGTGACCCACAACCCAACCTTCGCCGCCACTCCACCGGTTCCTAACTAACCACCACG------AC
CTCCGGCCCCGCCCGTCAGCCGAACAGCACTGCGCCTCGTGCGCCCGGGCCGCACGATCGACCACGTTTCCATGCTCCAC
CTGCGACGCAACTTCCCACGCCGCCGGCCACCTCCTCGCCCCCACCGCTTTATAACCCTCTCACTCCACCACTCCCTCAC
ACCACACCACACCACACCCAGCTAGAGCGAGGCGGACACCCAAGCAACCACACTCTCCCACCCTCAGCCACCGCACAAG-
--GAAGAAGCAGAAGAGGTCTTCTCTCTCCCTGCTTTGCTTAGCTTCGTTTGTGACTGCCATGTCGTCGTCGGCCATGGA
AGCGCTCCACGCCCTGATCCCGGAGCAGCACCAGCTGGACGTTGA---GGCGGCTGCGGCTGTCAGCAGCGCCACCAGCG
GCGAGGAGAGCGGCCACGTGCTGCAGGGGTGGGCCAAGAGGAAGCGATCGCGCCGCCAGCGCTCCGAGGAGGAGAACCTC
GCGCTCTGCCTCCTCATGCTCTCGCGCGGCGGCAAGCAGCGTGTTCAGGCGCCGCAGCCGGAGTCGTTCGCTGCGCCGGT
GCCTGCCGAGTTCAAGTGCTCCGTCTGCGGCAAGTCCTTCAGCTCCTACCAGGCGCTCGGAGGCCACAAGACGAGCCACC
GGGTGAAGCAGCCGTCTCCTCCCTCTGATGCCGCTGCTGCCCCACTCGTGGCCCTCCCGGCCGTCGCCGCCATCCTGCCG
TCCGCCGAGCCGGCCACGTCGTCCACCGCCGCGTCCTCCGACGGCGCGACCAACAGAGTCCACAGGTGCTCCATCTGCCA
AAAGGAGTTCCCGACTGGGCAGGCGCTCGGCGGGCACAAGAGGAAGCACTACGACGGAGGCGTGGGCGC---CGCCGCCT
CGTCGACCGAGCTTCTGGCCGCCGCGGCCGCCGAGTCTGAGGTGGGGAGCACCGGCAACGGGAGCTCCGCCGCCCGGGCC
TTCGACCTGAACATTCCGGCCGTGCCGGAGTTCGTGTGGAGGCCGTGCGCCAAGGGCAA---GATGATGTGGGAGGACGA
TGAGGAGGTGCAGAGCCCCCTCGCCTTCAAGAAGCCTCGGCTTCTCACCGCTTGAGCA-------GCTCCTGCATGGATC
CCATCGAT----CCATCCAAAGTTTTTGGTCCAGTCGA-TCCAGTGGTGAAATTCGTTCATTCGTTTGGTTAAATTTGTT
CTGCTCCTGTACAGATTGAGTGAGTG----AGTAATACTA----CATACATACTCCAGTAGCCATATACGTAGA---TAT
AGGCAGTAAG-------------TTGTAACGACGGAAGAGTACTTGCTTCCTCTTTCAGATGTTGGGTAGGCGTCAGTAT
ATTGTACTAGTCGACAGTTCATACATACTCGTACAGAGATTGGTCATGAACTAGCAGTACCGTGTAACATAAAGCATGGA
TGAAATTGGAGATTATTGGAATTGAT---------------------GGAAATTCTGCACTTGTTTTATCAATTTAACTT
CAGTGGCTCGATGAAACTTGAAATGATTGGTAGTTCTCCCACGTGTATTCCCTTTGCGTACACTGTA-------------
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-----------ACTTGTATTGGCCACGAAGGAACCCCTGCTGTAACTTGCAAGAAAGCCTCGCAGAAACAACACTACTGT
AACTTGCAAGAAGGAAAATGAGACGGAAGCCTCTGTT----TTTTTTTCTGTGACACTTAGCCTCTGCT---TCAGTTCA
TAGCAGCAGA------AGCGGAGAAGTGTACTCAACCTCGCACGGACCGATC-ACCGGCCGCCTAGCAAGACTGCTCACC
ACGTCTCCGGCGTGGCGTGATTAG--CTCGACGAATAATCAAATTTGATTCCACCGTCTGTGTTTAGCCGGGGAATTGCT
GCGTGACATGTGCTAG----CTAGCTAGAAGGAGACTACGACTAGTAGTACAAGACACCGCTGGCAGCAAGTGGAAACAA
ACCTCGGGCCGGTTCGCAGCATCGTGAACGTCGACCGGCCGGCGGCACA-----CCAGCCCAACTTGCCGCGCGGTGGAT
GGAAATGGCGACAGCGACGTCGGCCCGCCCGCCCGCCCGCCCGCCGGGGTTGATAGGCTTTTTTCCCCGTGCCGACCTGC
A-----GCTGGAGTGATCGCTTTCGACGCAACGCCCGGCCAGCGCC
>chr5A_1
AAGCACGAGCGCGAAGACCGTGTCGGCTTTCCACACGCATGTGCCAAACGCTGGCTTTGTTTCCAGC------ACCACTA
CCGTAGCCACCACCCCCTCATTTTGACCCACTGTCATTTTGCTTGCACTCTACTGGCCC---TAACAATCAAACCGTGAG
GTCAGCACGCACCCATGCATGCACCACCCTAGATGTTTCACGAAGACAAACACAATTCGGATGTTGCCCGCCCCGGCTTT
CGTT----TTTTACCCCCCCA----AAAAAGATGGGCATGTCACGTAGTACGTGCGCACTACGTATATATAGCGTCGAAT
TTATTTTG-GAACGAACCGTCCAATGAGCGTGAGGGTCAAATACGCACGACAGCCGCAGCTCGAGCAGT-----------
--------------------AAACTAATGTGGAAACGGCGTTAGCGGT-----CCGGGTCGGATTTGCGTTCCGCAACCG
ACGGCGACCGCTTCTCATGCACAGTCGGTCCGCACTGACACCGCGGCCTCCTCGGTCCGACCAGTCCTCACTCTTCTTCG
GAATCACACTCCCACCACACA----CACCCGCAACCTCACTAGCTCCACTTGCGCTGCCTGCCTTGCTTGCCCGGCCGTG
TCTTCCCCTCCACGTTGACCACGACTTTTTCGTTGCATGCGACCCACCTCTCG---------------TCCACCACCCAC
CACATCAAGAACCCAAGTGACCCACACCCCAACCTTCGCCGCCACTCCACCGGTTCCTAACCAA----------------
--CCGGCCCCGCCCGTCAGCCGCACAGCACCGCCCCGCGCCTCGTG----CGCACGATCGACCACGTTTCCATGCTCCAC
CTGCGACGCAACTTCCCACGCCGCCGGCCACCTCCTCGCCCCCACCGCTTTATAACGCTCTCACTCCACCACTCCCT---
-------CACACCACACCCAGCTAGAGCGAGGCGGACACCCAAGCAACCACACTCTCCCACCCTCAGCCACCGCACAAGC
AAGAAGAAGAAGAAGAGGTCTTCTCTCTCCCTGCTTTGCTTA---------------GCCATGTCGTCGTCGGCCATGGA
AGCGCTCCACGCCCTGATCCCGGAGCAGCAGCAGCGCGACGGGGAGATGGCGGCCGCGGCGCTCAGCGGCGCCACCAGCG
GCGAGGAGAGCGGCCACGTGCTGCAGGGCTGGGCCAAGAGGAAGCGATCGCGCCGCCAGCGCTCCGAGGAGGAGAACCTC
GCGCTCTGCCTCCTCATGCTCTCCCGCGGCGGCAAGCAGCGTGTTCAGGCGCCGCAGCCGGAGTCGTTCTCTGCGCCGGT
GCCTGCCGAGTTCAAGTGCTCCGTGTGCGGCAAGTCCTTCAGCTCCTACCAGGCGCTGGGTGGCCACAAGACGAGCCACC
GGGTGAAGCAGCCGTCTCCTCCCGCTGATGCCGCCGCCGCTCCACTCGTGGCCCTCCCGGCCGTCGCCGCCGTCCTGCCG
TCCGCCGAGCCGGCCACGTCGTCCACCGCCGCGTCCTCCGACGGCACGACCAACAGGGTCCACAGGTGCTCCATCTGCCA
AAAGGAGTTCCCCACCGGGCAGGCGCTGGGCGGGCACAAGAGGAAGCACTACGACGGAGGCGTGGGCAGCGTCGCCCCCT
CGTCCACCGAGCTTCTGGCCGCCGCGGCCGCCGAGTCCGAGGTGGGGAGCACCGGCAACGGGAGCTCCGCCGCCCGGGCC
TTCGACCTGAACATCCCGGCCGTGCCGGAGTTCGTGTGGAGGCCGTGCGCCAAGGGCAA---GATG---TGGGAGGACGA
GGAGGAGGTGCAGAGCCCCCTCGCCTTCAAGAAGCCCCGGCTTCTCACCGCCTGAGCATCTAGCTGCTGCTGCATGGATC
CCATCGAT----CCATCC-AAGTTTTTGGTCCAGTCCAGTCCAGTGGTGAAATTCGTTGATTCGTTTGGTTAAATTTGTT
CTGCTCCTGTACAGATTGAGTGAGTGAGTGAGTAATACTA----CATACATACTCCAGTAGCCATATACGTAGAAGATAT
AGGCAGTAGATCTTGTTGGTTCCTTGTAACGACGGAGGAGTACTTGCTTCCTCTTTCAGATGTTGTGTAGGCGTCAGTAT
ATTGTACTAGTCGACAGTTCATACATACTCATACAGAGATTGGTCATGAACTGGCAGTGCCGTGTAACATAAA-CATGGA
TGAAATTGGAGATTATTGGAATTGAT---------------------GAAAATTCTGCGCTTGTTTTATCAATTTAACTT
CGGTGGCTCGATGAAACTTCAAATGATTGGCAGTTCTCCCACGTGTATTCCCTTTGCGTACACTGTAA------------
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---------TAACTTGTATTCGCCATGAAGGAA-CCCTGCTGTAACTTGCAAGAAAGCCTCGCAGAAACAACACTACTGT
AACTTGCAAGAAGGAAAAGGAGACGGAAACCTCTACTTCAATTTTTTTTTTTGACACTTAGCCTCTGCTTGATCAGTTCA
TAGCAGCAGCAGGAGCAGCGGAGAAGTGTACTCAACCTCGCACTGACCGATCCATCGGCCGCCTAGCAAGACTGTTCTTT
ACGTGTCCG-CGTGACGTGATTAGCTCTGGACGAATAATCAAATCCGATTCCACCGCCTGTGTTTAGCCGGGGAATTGCA
GCGTGACATGTGCTAGCTAGCTAGCTAGAAGGAGACTACGACTG---GTACAAGACACCGCTGGCTGCAAGTGGAAACAA
ACCTCGGGCCGGTTCGCAGCATCGTGAACGTCGACCGGCCGGCGGCACCCCAACCCAGCCCAACTTGCCGCGCGGTGGAT
GGAAATGGCGACAGCGACGTCGGCCCGCCCGCCCGCCCGCCCGCCGGGGTTGATAGGCTTTTTT-TCCGTGCCGACCTGC
AGCGCAGCTGGAGTGATCGCTTTCGACGCAACGGCCGGCCAGCGCC
>chr5D_2
-AGCACGAG-GCGAAGACCGTGTCGGCTTTCCACACGCATGTGCCAAACGCTGGCTTTGTTTGCAGCACCGGAACCACTA
CCGTAGCCAC---CCCCTTCATTTGACCCACTGTCATTTTGCAGTCTAG----TGGCTCTAATAACAATCAAACCGTGAG
GTCAGCACGCACCCATGCA----CCACCCTAGATGTTTCACGAAGACAAACACAATTCGGATGTTGCCCGCCCCGGCCTT
CTCT----TTTTTTTACCCAAAAAGAAAAAGATGGACATGTCACGTAGTACGTACGAGCTACGTATATATAGCGTCGAAA
-TATTTTG-GAACGAACCGTCCAATGGGAGTGAGGGTCAAATACGCACGACAGCCGCAGCTCGAGCAGTAAACTAATCTG
GAAACCCATGCAAAAAAAAAAAACTAATCTGGAAACGGCGTTAGCGGGCCGGGCCGGGTCGGCTTTGCGTTCGGCAACCG
ACGGCGACCGCTTCCCG----CAGTCGGTCCGCACTGACACCGCGGCCTCCTCGGTCCGACCAGTCCTCACTCTTCTTCG
GAATCACACTCCCACCACACACACACACCCG----CTCACTAGCTCCACTTGCCC--------------GCCCGGCCGTG
TCTTCCCCTCCACGTTGACCACGACTTTTTCGTTGCATGCGACCCACACCACCTCTCCTCCTCCTCCCTCCACCACCCAC
CACATCGAGAACCCGAGTGACCCACAACCCAGCCTTCGCCGCCACTCCACCGGTTCCTAACTAACCACCCCTGCCACCAC
CTCCGGCCCCGCCCGTCAGCCGCACAGCACCGCGCCTCGTGCGCCCGGGCCGCACGATCGACCACGTTTCCATGCTCCAC
CTGCGACGCAACTTCCCACGCCGCCGGCCACCTCCTCGCCCCCACCGCTTTATAACCCTCTCACTCCACCACTCCCT---
-------CACACCACACCCAGCTAGAGCGAGGCGGACACCCAAGCAACCACACTCTCCCACCCTCAGCCACCGCACAAG-
--GAAGAAGAAGAAGAGGTCTTCTCTCTCCCTGCTTTGCTTAGCTTCGTTTGTGACTGCCATGTCGTCGTCGGCCATGGA
AGCGCTCCACGCCCTGATCCCGGAGCAGCACCAGCGCGACGTTGA---GGCGGCCGCGGCGCTCAGCGGCGCCACCAGCG
GCGAGGAGAGCGGCCACGTGCTGCAGGGGTGGGCCAAGAGGAAGCGATCGCGCCGCCAGCGCTCCGAGGAGGAGAACCTC
GCGCTCTGCCTCCTCATGCTCTCCCGCGGCGGCAAGCAGCGCGTGCAGGCGCCGCAGCCGGAGGCGTTCGCTGCGCCGGT
GCCTGCCGAGTTCAAGTGCTCCGTCTGCGGCAAGTCCTTCAGCTCCTACCAGGCGCTGGGTGGCCACAAGACGAGCCACC
GGGTGAAGCAGCCGTCTCCTCCCGCTGATGCCGCCGCTGCTCCACTCGTGGCCCTCCCGGCCGTGGCCGCCGTCCTGCCA
TCCGCCGAGCCGGCCACGTCGTCCACCGCCGCGTCCTCGGACGGCACGACCAACAGAGTCCACAGGTGCTCCATCTGCCA
AAAGGAGTTCCCCACCGGGCAGGCGCTGGGCGGGCACAAGAGGAAGCACTACGACGGAGGCGTTGGCGC---CGCCGCCT
CGTCCACCGAGCTTCTGGCCGCCGCGGCCGCTGAGTCCGAGGTGGGGAGCACCGGCTACGGGAGCTCCGCCGCCCGGGCC
TTCGACCTGAACATCCCGGCCGTGCCGGAGTTCGTCTGGAGGCCGTGCGCCAAGGGCAAGATGATG---TGGGAGGACGA
CGAGGAGGTGCAGAGCCCCCTCGCCTTCAAGAAGCCTCGGCTTCTCACCGCCTGAGCAGCTTGCTCCAGCTGCATGGATC
CCATCGATGATTCCATCCAAAGTTTTTGGTCCAGTCCAGTCCAGTGGTGAAATTCGTTCATTCGTTTGGTTAAATTTGTT
CTGCTCCTGTACAGATTGA----GTGAGTGAGTGATACTACATACATACATACTCCAGTAGCCGTATACGTAGAAGATAT
AGGTCCTAGATCTTGTTGGTTCCTTGTAACGACGGAGGAGTACTTGCTTCCTCTTTCGGTTGTTGTGTAGGCGTCAGTAT
ATTG---TAGTCCACAGTTCATACATACTCATACAGAGATTGGTCATGAACTGGCAGTGCCGTGTAACAGAAA-CATGAA
TGGAATTGGAAATTATTCGAATTGAATTTTTTGGACTTATTATTTGAGGAAATTTTGCAGTTGTTTATCTATATTA--TT
CGGTAGCTTGCTGAAACCTCAAATGATTGATAGTTCCGCCACGTCTACTCCCTTTGCGTACATTGTACTTCCTCCGTTCC
GAATTACTCGTCGCAGAAATGGATGTATCTAATGTATTTTAGTTCTAGATACATCCATTTCTACGACGAGTAATTTGAAA
CGGAGGGAGTAACTTGTACTCGCCTCCGAGA--------------------------------------AACTCTACTGT
GACTTGCAAGAAGGAAAAAGAGACGGAAGCCTCTGCTTCAAATGTTTTTTTTTACCCTTAGCCTCTGCT---TCAGTTCA
TGGCAGCAGA------AGCGGAGAAGTGCACTCAACCTCGCACGGACCGATCGACCGGCCGCCTAGCAAGACTGTTCTTT
ACGTGTCCG-CGTGACGTGATTCGCTCTCGACGAATAATCAAATCCGATTCCACCGCCTGTGTTTAGCCGGGGAATTGCT
GCGTGACATGTGCTAG----CTAGCTAGCAGGAGACCACGACCAGTAGTACAAGACACCGCTGGCTGCAAGTGGAAACAA
ACCTCGGGCCGGTTCGCAGCATCGTGCACGTCGACCGGCCGGCGGCACCC-----CAGCCCAACTTGCCGCGCGGTGGAT
GGAAATGGCGACAGCGACGTCG----GCCCGCCCGCCCGCCCGCCGGGGTTGATAGGCTTTTTTCTCCGTGCCGACCTGC
G-----GCTGGAGTGATCGCTTTCGACGCAACGGCCGGCCAGCGCC
>SNPs
----------------------S--------S-------------------------S----------------------
--------S------------------------------S--S---S---------------S---------S-------
---------------------------------------S---------------S-----------S-S-SS-SSSSSS
SS--SSSS-------------------------S----------S------------------------S---S------
-------SS---S--S--------------------------------------------S---S---------------
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-------------------------------S--S----S----------------------------------------
------------------------------------------------------------SS-----SS-----------
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----S-----S----------------------------------------------------------S-S--------
----------------------S-------S-------------------------------------------------
-----------------------------------------------------------------------------SSS
SSSSSSS-------------------------------------------------------------------------
---------S----------------------------------------------------------------------
-----------------------------------SS-----------------S-----SS-----S------------
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-----------------------S--------------------------------------------------------
---------------------------------------------------------S--S-------------------
-----------------------S----------S-----S------------------------------S--------
---------------------------------------------S----------------------------------
------------S--S-----------S----------------------------------------------------
----S--------------------------------S------------------------------------------
--------------S---------------------------------------------------SSS-----------
S--------------------------------------------------S----------------S-----------
------------------------------------S-------------------------------------------
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--------SS--------------------------S----------------------------S--------------
------------------------------S---------------------S-----S--------------S------
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-S-----------------S------------------------------------------------------------
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--------------------S------------S----------------------------------------------
------------------S----------------S------------S-S-----------------------------
--------------------------------------------------------------------------S--SSS
----S----S----S-----------------------------SS----------S-----------------------
-----------------------------------------------------------------S--------------
------------------------------------------------S-------------------------------
-----------------------------------------------------------------S--------------
---------------------------------S------------
>forward_127
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---------------------------CCACTGTCATTTCGCGTTCG---------------------------------
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>reverse_1827
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------------------------------------------------------------------ATGTGGGAGGACGA
TGAGGA--------------------------------------------------------------------------
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>forward_1613
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-------------------------------------------------------------------------TCTGCCA
AAAGGAGTTCCCG-------------------------------------------------------------------
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>reverse_2777
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--------------------------------------------------------TCTGTGTTTAGCCGGGGAAT----
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