>input_sequence_68929
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---------------------------------------------------------------ATGGCGTCTAGCACCAG
GTTTGCTCCCCTCCTCCTC---GCGCTCGCCGCCCTCGCCGCGGCGGCGCTCGCCCCCTCCG---CGTCGGCGGCGCCCG
GCACGGAGTACTGCCAGGACACGCTGGGCGGCCTGCTGGCGTGCCACGCGTTCATGTACGAGGGCGCGCCGGCGGCCTCG
CCCGCGTGCTGCGACGCCTACAGCGCCGCCTTCAACGCCGACCCCTTCTGCCTCTGCTACATCGCCAACGGCGTCTACGG
CCGCTCCACCGGCTACGACGTCAACGTCACCCACGCCCTCGAGATCCCCACCAGCTGTGGCCAGGTCCAGCCGCCCATCC
AGCTCTGCGACAGTAAGTAGCCACCATACAAAGCCTCTCATGATCGATCGAACTC------TTCTCTGCCTACGTGCGCG
ACTGA----ACTCTGATCCGATCGACTAATTGATCGATGAATTTTGCAGTGCAAGGAGTGGTGCTTCCTCCCTACGAGCC
GGAGTCC---GGACCCAAGGCTTCGTCGCCGGCGGCGCAGCCACCTTCCGGTATGTACTGGTCGT---TCGACACCGAGA
TCGATAGGAGAAACTTTCGGTCGATGTCTGACCAGAGCTTTGGTTTGACTATATTATGATGCAGCAGGATCGGTAGAGCC
ACCACGGTCGTCTCCTGCGGCGCCGTCGTCGACTTCCCCGCCACCGCCACCACCACCAACAACAACAACCTCCGGCAGTG
ATCAATCCTCGGCGCAGATGGCCCTCGTGCTCTTCACCGTCGCTGCCGGCATGGTCGCGGCCGTGGCCTGA---------
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>chr5B_1_TraesCS5B01G282500
AGTTTCATAGAGTTTTACCATGTTTTGATACAGTAAACATGATACGAGTTTAACAGTTTTGTAGAGTTCCACTATGTTTT
AGTACTTAAATTAAAACTTCGCAATGTTTTTTCTTAAATTAGAGCTTCGGGGAGGAGCCCCGTGGCATTATAATTAAGAA
GGAAGGTGTGAGACACCAAGTTTTAAATCCACCAAATAAATTCGGCCCACAGAATTCGAACTTGGGTCTGCCAAGGCACA
CAACCATGCTCTTGCCACT-GGCTAGGTTCCCATCCACAATATACTTTCTGGAGGAGGAGAGGGCGCAAAATAAATTCAA
GAGTGTTCTTGGTCAAAACCCTCGTCACCAACAACATAAAGATGCAAACAGATCTTAAATTTCACTTTGTTTCGTAAGAT
AAAATGATTTCAAACATGAAACTAATGTGAAAAAGCTTCGGAGGGTGTAGCATATTATGGTACAGTGGGTGGAGCAAGTC
TTGGTGAAATCTCTGCCAGAAGTACACTGTGTGGAGTCCCTAGAAAAAGTACACTGTGTGGAGAATAAGGACTGGCTGAT
GGTATGACATACTGTATTTGACAGAATACAGGGAAATAAATTTCAGTAAAATATAATCTAAAAAAATCAGTAATAATAAA
ATAAGCAATG-------CACGTGAAATATTGC-GAGCCCAGGACTGCATGGATTCTTTTTCTTTTCTTTTTTTTTGAAAC
T--AGGACTGCATGGATTCGAACCTCCAAAATTGATCAAGGGCTGCTACTTGCGCGGATATCTATGCACACGGTAGAATT
ACTTTTCTCGGAGGCGTACAATAGCGAGAGTATTGTGTATTGACTTGTCTGTTCCTTGCACGACGCAATGTCT---TCGT
TCAAAATATAAATCCTCTT--ACGCTGACCCCTCTACCAACCCCTACTCCCCATCAATAA---ATAAGCTGCGCGCCCCT
GCATGCATACGTGCACCTCAATCACGATCTAGAAACGAGCAACTCGCCGATCAATCGA----CATGGCGTCTAGCACCAG
GTTTGCTCCCCTCCTCCTC---GCGCTCGCCGCCCTCGCCGCGGCGGCGCTCGCCCCCTCCG---CGTCGGCGGCGCCCG
GCACGGAGTACTGCCAGGACACGCTGGGCGGCCTGCTGGCGTGCCACGCGTTCATGTACGAGGGCGCGCCGGCGGCCTCG
CCCGCGTGCTGCGACGCCTACAGCGCCGCCTTCAACGCCGACCCCTTCTGCCTCTGCTACATCGCCAACGGCGTCTACGG
CCGCTCCACCGGCTACGACGTCAACGTCACCCACGCCCTCGAGATCCCCACCAGCTGTGGCCAGGTCCAGCCGCCCATCC
AGCTCTGCGACAGTAAGTAGCCACCATACAAAGCCTCTCATGATCGATCGAACTC------TTCTCTGCCTACGTGCGCG
ACTGA----ACTCTGATCCGATCGACTAATTGATCGATGAATTTTGCAGTGCAAGGAGTGGTGCTTCCTCCCTACGAGCC
GGAGTCC---GGACCCAAGGCTTCGTCGCCGGCGGCGCAGCCACCTTCCGGTATGTACTGGTCGT---TCGACACCGAGA
TCGATAGGAGAAACTTTCGGTCGATGTCTGACCAGAGCTTTGGTTTGACTATATTATGATGCAGCAGGATCGGTAGAGCC
ACCACGGTCGTCTCCTGCGGCGCCGTCGTCGACTTCCCCGCCACCGCCACCACCACCAACAACAACAACCTCCGGCAGTG
ATCAATCCTCGGCGCAGATGGCCCTCGTGCTCTTCACCGTCGCTGCCGGCATGGTCGCGGCCGTGGCCTGAAGATGGAAA
TTGCAGCCATGATAAGATATGATCTCAGGACTTGCAGATTAGGAGTATTAGCTGCAGATTGGAATTTAAATTAAATCGTG
ACATATATGTTGTTCGCAACATGTAATTATATAGTAATAGACTAAATATATAGGGGGTTTTCTCTTT---------GTTA
ATCAAATAGCTATAGGAGTTAGA-T-------------------------------------------------------
-------------------------AAAGTTTACAGAGGAATAGATGAGTATTAGCAAATCCTTTGTTTCTTTTATTAGC
AAAATTCTAGAAATAAATTGGTTATTTCGGTGTTTCTTGCGTGTATGACCATGACATACATAATCTGCCTATATCCAAGT
GCATGCATTAAG----TCGAACAGGAGGTTCTAAAAAGGTTACTTTACCCATGTACA-----------------------
---------------------------------------------------TAAGGTGTCAATAGAACATAGTCAACGTA
CTTTACCCATATTACCGAGTTTCTCCATTCTCAGAATTTGTCTTGGAAGGATTGGTTCCTATGGTACTCACCACTGCCAC
TCTCCCAGGGAAGGCAATGCTTCTTCCTTTTTTTTTAC-GAGAAAAATTTACAATCTATTCATCAACTAC----------
----------CAGAAGTAAAATTTACATTCAGGTTCTTTCATCACCTAGCGACGACTACAAGCAGCGAGCCGAAGGCGTG
CCGCCGTCATCAACCATCCATCACCAAAGCCGGGCAAACCTTAAGTCTAGACACAGGAACACAGACGAACGAACACCGGA
TCCATGTGGATCCACCGAAGACAAACGCCAATCGAATCCCACGAGATCCGCCAAAGACAAACCTCCACACAGTGTCCTAT
GACGCTAGCAAACACCTACACGACCTCTCTGAGATGACTCAACGCTCAGTGAGTAATGGTTGTGCCACCTTCTTTTGATC
ATGACATAT-GATCCTCCCAAAACCCT-------------------------------TAGCCAATACCTTCCCGGCACT
ACTCCCACCAGTAAAACCATAATGCCCTTGTCTAAAACAATTGTGCATGATGGGATCAAGCTT-CATTGCGTAATAGACT
AACCAATGCCACG
>chr5D_1
AGTTTCATAGAGTTTTACCATGTTTTGATATAGTAAACATGATACAAGTTTAACAGTTTCGTAGAGTTCCACTATGTTTT
AGTACTTAAATTAAAACTTCGCAATGTTTTTTCTAAAATTAGACCTTCGGGGAGGAGCCCCGTGGCATTATAATTAAGAA
GGAGGGTGTGAGACACCAAGTTTTAAATCCGCCAAATAAATTCGGCCCACAGAATTCGAACTTGGGTCTGCCAAGGCACA
CAACCATGCTCTTCCCTCTGGGCTAGGTTCCCATCCACAATATATTTTCTGGAGTATTCTTGTTTCAAAA----------
-----------GTCAAAACCCTCGTCACCAACAACATAAAGATGCAAGCAGATCTTAAATTTCACTTTGTTTCGCAAGAT
AAAATGATTTCAAACATGAAACTAATGTGAAAAGGCGTCGGAGGGTGGAGCATATTATCGTACAGTGGGTGGAGCAAGTC
TTCGTGAAATCTCTGCCAAAAGTACACTGTGTGGAGTCCCTAAAAAAAGTACAATGTGTGGAGAATAATGACTGGCTGA-
--TATGACATACTGTATTTGACAGAATACAGGGAAATAAACTTTAGTAAAATATAATCTAAAAAAATCA------ATAAA
ATAAGCAACTACTCCTACACGTGAAATATTGTGGAGCCCAGGACTGCATAGATTCGAATCTCCAATAGATCAAGGGCGAG
CCCAGGACTGCATGGATTCGAATCTCCAATACATG------------------------------------GGTAGAATT
ACTTTTCTCGGAGGCGTAGAATAGCGAGAGTATTGTGTATTGACTTGTCTGTTCCTTGCACGACGCAATGTCT---CCGT
TCAAAATATAAATCCTCTT--ACATTGACGCCTCTACCAACCCCTACGCCCCATCAATAAATAATAAGCTGCGCGCCCCC
GCATGCATACGTACACCTCAATCGCGATCTAGAAACGACCAACTCGCCGATCAATCTCGCAGCATGGCGTCTAGCACCAG
GTTTGCTCCCCTCCTCCTA---GCGCTCGCCGTCCTCGCCGCGGCGGCGCTGGCCCCCTCGG---CGTCGGCGGCGGCCG
GGACGGAGTACTGCCGGGACACGCTGGGCGGCCTGCTGGCGTGCCACGCGTTCATGTACGAGGGCGCGCCGGCGGCCTCG
CCCGCCTGCTGCGACGCCTACAGCGCCGCCTTCAACGCCGACCCCTTCTGCCTCTGCTACATCGCCAACGGTGTCTACGG
CCGCTCCACCGGCTACGACGTCAACGTCACCCACGCCCTCGAGATCCCCACCAGCTGCGGCCAGGTCCAGCCGCCCATCC
AGCTCTGCGACAGTAAGTAGCCACCATACCAAGCCTCGCATGATCGATCGAACTACGTATACTCTCTACCTATGTGCGCG
ACTGA----ACTCTGATCCGATCGACTAATTGATCGATGAATTTTGCAGTGCAAGGAGTGGTACTTCCTCCCTACGAGCC
GGAGTCC---GGACCCAAGGCTTCGTCGCCGGCGGCTCAGCCACCTTCAGGTATGTACTGGTAGTCGCTTGACACCGAGA
TCGATGGGAAACACTTTCGGTCGATGTCTGATCAGAGCTTTGGTTTGACTATTA----ATGCAGCAGGATCGGTAGAGCC
ACCACGGTCGTCTCCTGCGGCGCCGTCGTCGACTTCCCCGCCACCGCCACCACCAACAACAACAACAACCTCCGGCAGTG
ATCAATCTTCGGCGCAGATGGCCCTCGTGCTCTTCACCGTTGCTGCCGGCATGCTCGCGGCCGTGGCCTGAAGATGGGAA
TTGCAGCCGTGATAAGCTATGATATCAGGACTTGCAGAATATGAATATTAGCTGCAGATTGAA-----------------
ACATACATGTTGTTCGCAACATGTAATTAT---GTAATAGACTAAATATATAGGTTTTTTTT---------CTTTGGTTA
ATCAAATAGG--TAGGAGTTAGA-TGAGGCTTTGTTAATTCTCATCTACTCCCTCTATAAGCTTTTATAAGACGTTTTAG
ATCACTAACC-TAAAACGTCTTATAAAAGTT----GAGGAATAGATGAGAATTAGCAAATCCATTGTTT----TATTAGC
GAAATTCTGGAACTAAATTGGTTATTTGGGTGTTTCTTGCGTGTATGACTATGACATACATAATCTGCCTATATCCAAGT
GCATGCATTAATTAAATCGAGCAGGAGGCTCTATAAAGGTTACTTTAACCATGTACTCCCTCCCATAATATAAGAGTGTT
TTTGACATTATAGTTCTTATATTGTGGAACGGAGGGACAACAATGTAATTTTAAGGTGTCAATAGAACATAGTCAAGGTA
CTTTACCCATATTACTGAGTTTCTCCACTCTCAACATTTGCGTTGGAAGGATTGGTTCCTACGATACTCACCGCTGCTGC
TCT-CCAGGGAAG-CAATGCTTCTTTCTTAGCAAAAGTAGTCTACAGC--------------------------------
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------------CACCTACACCGCCTCTCTGAGATGACTCT--------------------------------TTTGGTC
A-GACATATGGATCCTCCCAAAACCCGTAGCCAAAAATTCAAAAAAAAAAAAAAAACCTAGCCAATACCTTCCCGGCACT
------------------------------------------------GATGGGATCGAGCTTGCATTGCGTAATAGACT
AACCAATGCCACG
>chr5A_747
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-------------------------------------AAGGGCTGCTGCCTGCACGGGCATCCGTGCAT--GGTAGAATT
GCTTCTATCGGAGGCGTGCCATTACCGGAGTATTGGCTATTGACTTGTCCGTCCCTTGCACGACGCAATGTGTCCGTCGT
TCAAAATACAAATCCTCTTCAACGTTGACCCCTCTACCAA--CCTACGTCCCATCAATAAATAATAAGCTGCGCGCCCCT
GCATGCATACGTACACCTCAATCGCGATCTACAAACGAGCAACTCGCCGATCAATCGA----CATGGCGTCTAGCACCAG
GTTTGCTCCCCTCCTCCTCCTCGCGCTCGCCGCCCTGGCCGCGGCGGCGCTCGCCCCCTCGGCGTCGGCGGCGGCGGCCG
GGACGGAGTACTGCCGGGACACGCTGGGCGGCCTGCTGGCGTGCCACGCGTTCATGTACGAGGGCGCGCCGGCGGCCTCG
CCCGCGTGCTGCGACGCCTACAGCGCCGCCTTCAACGCCGACCCCTTCTGCCTCTGCTACATCGCCAACGGCGTCTACGG
CCGCTCCACCGGCTACGACGTCAACGTCACCCACGCCCTCGAGATCCCCACCAGCTGCGGCCAGGTCCAGCCGCCCATCC
AGCTCTGCGACAGTAAGTAGCCACCGTACAAAGCCTCTCATGACCGATCGAACTC------CTCTCTGCCTACGTGCATG
CGCGATTGTACTCTGATCCGATCGACTAATTGATCGATGAATTTTGCAGTGCAAGGAGTGGTACTTCCTCCCTACGAGCC
GGATCAGTCTGGACCCATGGCCTCGTCGCCGGCAGCGCAGCCACCTTCAGGTA--TACTGGTTGT---TTGACACTTAGA
TCGCTAGGAGAAGCTTTCGGCCAATGTCTGATCAGAGCTTTGATTTGACTATTA----ATGCAGCAGGATCGGCAGAGCC
ACCACGGTCGGCTCCTGCGGCGCCGTCGTGGACTTCCCCGCCACCGCCACCACCACCACCAACAACAACCTCCGGCAGTG
ATCAATCCTCGGCGCAGATGGCCCTCGTGCTCTTCACCGTTGCTGCCGGCATGGTCGCCGCCGTGGCATGAAGATGGGAC
TAGC-------------TATGATATCAGGACTTGCAGATTAGGAATATTAGCTGCAGTTTGAAATTTAAATTAAATCATG
ACATATATGTTGTTCGCAACATGTAATTAT---GTAATAGACTCAATATATAGGTTTTTTTTTCTTCTTTTCTTTGGTTA
ATCAAATAGT--TAGGAGTTAGAATGAGACTTAATTACTTCTCATCTACTCCCTATAAAAACTTTTATAAGACGTTTTAA
ATCACTTAATTTAAAACGTCTTATAAAAGTTTACAGATGAGCAGATGAGTATTATCAAATCCGTTGTTT----TATTAGC
AAACTTCTAGAAC--------------------------------------TGACATACATAATCTGCCTATACCCAAGT
GCATGCATTAA----ATCGGACAGGAGGTTCTAAAAAGGTTACTTTACCCATGTACATAAGA------------------
------------------------------------ACAACAATGTAATTTTAAGGTGTCAATAGAACATAGTCAAGGTA
C------------------------------------TTGTCTTGGAAGGATTGGTTCCTATGGTCCTCACCACTGCCAC
TCTCCCACGGAAG-CAATGCTTCTTCCTTTCTTTCACGAGAAAAAAATTACAAATTTATTCATCAACTGTCAAGGTAGTA
CGAAGAACATCAGAAGTAAAATTTATATTCGGGTTTGTAGACCACCTAGCAACGACTACAAGCAGCGAGTCGAAGGCGTG
CCGTCGTCATCAACCCTCCATCACCAAAGCCGGGCAATTGGGAAGTCTAGACACAGGAACACAAACGAACGAACATCGGA
TCCATGTGGATCCACGGAAGACAAACGCAGATCGAATCCCACGAGATCTGCCAGAGACAAACCTCCAAACGCCCTCTGAT
GACGCTAACAAACACCTACACCACCTCTCTGAGATGACTCAATGCAAAGTGTGTAATGGTTGCGCCACCTTCCTTTGGTC
A-GACATAT-GATCCTCCCAAAACCCT-------------------------------TAGCCAATACCTTCTCGGCACT
ACTCCCACCACTAAAACCATAATGCCCTTGTCTAAAAAATTTGTGCATGATGGGATCGAGCTTGCACTGTGTAATAGACT
AACCAATGTCA--
>SNPs
------------------------------S--------------S-------------S--------------------
----------------------------------S--------S------------------------------------
---S--------------------------S-------------------------------------------------
-------------S--S---------------------------S---------S-SSSSS-SSSSS---SSSSSSSSSS
SSSSSSSSSSS------------------------------------S--------------------------S-----
---------------------------------S--S----------S----------S---------------------
--S---------------S-----------------------S----------S--------------S----------S
SS--------------------------------------S--S-------------------------SSSSSS-----
--------SS---------------------S-----------------S-----SSS-SSSSSSSSSS-SSSSS-SS-S
S---------------------S------S-SSSSSS----------S-S---S---SS---SS----SSS---------
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------------------------S----------------------S--------------------------------
------------S----------S--------------------------------------------------------
------------------------------------------------------------S---------------S---
-S-------------S----------------------------------------------------------------
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---------------------------------------------------------S----------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------S-----------------
------------------------------------------------S-------------S------S----------
-------------------------------S--------------------SSSSSS----------------------
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----------------------------------------S------------------------------------S--
--------S-------S------S--------------------S----------------S---------------S--
------------------------------SSS---------------------SSS----S----S-------------
---------SSS--------------------------------------------------------------------
--------------------------------------------------------------S------SSSS-------
------------S--------------S---------------------S------------------------------
-----------S--------------------------------------------------------------------
----------------------------------------------------------------------------S---
---------------S-----------S-----SS---------------------------------------------
-------------S----------------S---SSSS---S-------SSS---S------------SS----------
-------------------------S----S----SS-SS-S--------S------------------S----------
---S-----------S---------------------SSSSS---------------------S-----------S----
---------------S------------SS------------------S----S-------------S--SSSS--SS--
-------S-------------S--------------------S--SS----S----------S---------S----S--
-S------------------------------------------------------------------------------
----------S--------------------------S-S-----------------S----------------------
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>forward_254
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--------------------------------------------------------------------------GGCACA
CAACCATGCTCTTG------------------------------------------------------------------
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>reverse_1657
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--------------------------------------------------------TGATGCAGCAGGATCGGTAG----
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>forward_483
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---------------------------------------------------------------AGTGGGTGGAGCAAGTC
TTG-----------------------------------------------------------------------------
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>reverse_1658
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---------------------------------------------------------GATGCAGCAGGATCGGTAGA---
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>forward_790
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--------------------------------------------------TGCGCGGATATCTATGCACA----------
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>reverse_2769
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------------------------------------------------CGCCAAAGACAAACCTCCAC------------
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