>input_sequence_68925
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--------------------------------------------------------------------------ATGCCC
GCCCCGCTCATCCCCATCGCGGCGGCCACGGCCGCCGCCACCTCCGCCGTCGGCGTAGCGCTGGGGGTGCGCCTGCTCCT
CCTCCTCTCCCGCTCGCGCGCGCTCAAGCCGCTCGCCGCCACCACCTCCGCCGCCGCCGCCGCGCTCCGGGCGCCGCGGG
TCCTCGCCGCCGCCTCCTCCCCGCTCGCCGCCCTCCTCGC------------CGCCTCCAAGGCCGCCTCCAAGTCCTAC
AAGGCGGCGCGCGCGCTCGACCCGGCCGCGCGCCTCCCCTCGCTGCCCTCCTCCAAGCGCGTCAAGGCCGCCTTCGCCGC
CGCCTCCCTCCTCCGCCTCGCCCCGACCCTGCTCCTCCTCCCCGCCGCCGCCTCCTCGC---------------CCTCCC
CCACCGCCCTCTTCGCGCTCGCGCTGCTCAAGTCGGGCTACAAGCTCTCCAAGAACTCCGCCAAGGTCGTCGAGGGCTTC
CTCGGCCTCCAGGTCCACAAGGGCTTCCGCAACGGCGTCGACGCGCTCGGGGTCGTCGTCAAGGTCGCCGTCATCGCCTC
CGAGGTCGCCGTCTGGGTCGGCGGCCGCTTCTGGGGCGCCGACGACGATGGCCGCGGCCGCTCCGTGCGCTTCCTTGGCC
TCACCAGGACGACTACCTTGGTCCTGGCCGGGTCCGCAAAATCTGAAGCCCAGGTTGTGCTCTTCGATCCCGGAACTGTC
GTCGAGATGGAGGACGAGGGGTGCTGGCTGGAGGAGGACCCAGACCCATCCCTGTTGCTCTGCCTCGCGGTGCCTCTGCC
TGCCTGA-------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G510000
AAATAGAGGAGCTTGCCCTATGTAAGGAAATGTAATCAAATCCCTTAAAAAGTTATCCAAATGAGTGGTGCAAGGCAATA
CACCTTATATTTTGAACTTTTTCTCAAAAATCTATACACGTTATATCAAGGAACGGAGGGAGAATATTTAAACAAAAAGG
GAAAAAGGAAAAAAATGTGAAAAAACATAAGTGTCGATAGGGCCCATTTAATGTGGGGTCGGTTGGGCTAGCATGGGCCA
GAGACGCGGCTGGCGTGTCCGGGCGTCCTTATATCTGCCCTAGATATGGTGGCTTGATATGAGGAATGCCAGTCAGACCG
AGCATTTGAGCCTGAAAAGGGGCACCCGATTGGATGACGTTTTTTCGTCCAGATGCTGACCGGGCAGCCCATCCGGGCGT
TTGAGGCGAGTATGGAGGGTCTGGTTATAGCCGCTCTTATAATGCCAACCCAGAGGGGGAAACATTACATGAAAATGAAC
ATTTTTTAAAACATCATGGAAACCATGTTTGAATGTTTCAAAAAAAAATAAGAAAAAATACGAGATGTTAAGAAGGTGTT
TTATTGCCATATAAAAGTCCAAGTTAAAACATATTACGGATGCGAGCTAGAAAAAACAAATTCAGCAATGAATGGTGACG
TTACTATTTGGCAGTTGGCACTAGTCATTGTTGTGTTTGACCTTGTAATTTCGCATTGCAGTTTCGTAATATTTGTTTGC
AATTCACTCGGCATATCCGACTCGGCTATTCGCCGGAATCAGCACCTCGCCGCACCTCCTGCTGCATATCCCACGCGGCG
ATTCGGAATCAGCATCCGGACCGGACCCAACGGGTCAACCTAGAAAATCTTGCCGGCGCGACCCGGCCCA-ACCCAACGG
GCGATCGCGGCCGCGTCCACGTCGCTCCTG----CCGTCCCGTAT----------CCCTTTTCCCCACCCCCCACGG---
---------CTCCCGTCGTGCGCCATG-------CCCGCTCTCCTATGGCCTGTGACCCCGACGGCGCCGCCCCATGCCC
GCCCCGCTCATCCCCATCGCGGCGGCCACGGCCGCCGCCACCTCCGCCGTCGGCGTAGCGCTGGGGGTGCGCCTGCTCCT
CCTCCTCTCCCGCTCGCGCGCGCTCAAGCCGCTCGCCGCCACCACCTCCGCCGCCGCCGCCGCGCTCCGGGCGCCGCGGG
TCCTCGCCGCCGCCTCCTCCCCGCTCGCCGCCCTCCTCGC------------CGCCTCCAAGGCCGCCTCCAAGTCCTAC
AAGGCGGCGCGCGCGCTCGACCCGGCCGCGCGCCTCCCCTCGCTGCCCTCCTCCAAGCGCGTCAAGGCCGCCTTCGCCGC
CGCCTCCCTCCTCCGCCTCGCCCCGACCCTGCTCCTCCTCCCCGCCGCCGCCTCCTCGC---------------CCTCCC
CCACCGCCCTCTTCGCGCTCGCGCTGCTCAAGTCGGGCTACAAGCTCTCCAAGAACTCCGCCAAGGTCGTCGAGGGCTTC
CTCGGCCTCCAGGTCCACAAGGGCTTCCGCAACGGCGTCGACGCGCTCGGGGTCGTCGTCAAGGTCGCCGTCATCGCCTC
CGAGGTCGCCGTCTGGGTCGGCGGCCGCTTCTGGGGCGCCGACGACGATGGCCGCGGCCGCTCCGTGCGCTTCCTTGGCC
TCACCAGGACGACTACCTTGGTCCTGGCCGGGTCCGCAAAATCTGAAGCCCAGGTTGTGCTCTTCGATCCCGGAACTGTC
GTCGAGATGGAGGACGAGGGGTGCTGGCTGGAGGAGGACCCAGACCCATCCCTGTTGCTCTGCCTCGCGGTGCCTCTGCC
TGCCTGAGATGGCCAAATTAGTGGGTTAGTTGCAATTAGCACACAGCTGTGTTGTACAGTTGCTTATATCATCAGATGTT
GTATGTAGTCACGTACTCTTTTCAATTTTGATCCAATGTTTGCTTCCTAG-----CTCATGTGTGTCAGTTTTTCAGTTA
GTTGCGACTGCTTGCTTGTGCATCACCCCTCAATCAACAAGTG-AAGTAAATAAAAGTGGTGGTTTATGTGCACTCCTTG
TCTCCAC---CATATACCTTTTCAGTTAGCTGTTACTTTTCTGGTTTTATATTGAGTTTTGGAATTTGGTA---TTGATG
ATAGTTTTGCTGATATAGAGAATTCCAATATGGAAATGCTTCCACCTTCCAGTTTCACTTCTGGAGGGGAGGGTGTTTCC
GTTTAACTTGAGATATTTAAATTATTTAT---GGTCAGGTTGGAACTTTTGCTGGAACCTTAGAGGCAGCGTTTCAGTTT
CAGAAAGAATGAAAAATTAATGTATAAATTAGGATTTTCTCTGTCAACCAACTGCCGATTTTCTATATTGTGGGTTATTG
TTGGATAACTTGAATTCAAGCTGAAACCCATCAATTGAAATGTTTATGTTTTGTTGTCAAGAAGACAAGAACCTATCACC
ACACTCTTAGCGTTACTGAGTACATGATGTAAAAAATAGTGCCCATTGCTGTGTCTACTTCACCTTTCAGTTCTACTAC-
AACCTTTTTTT-----TAAGTACGGCATGTATCTGAAATGAATCATAAGTTTATAACTGCAATATTTGTTATTTCTTTAT
ATCTTGGGCCTGTACAATGGGCCTGGTGT-AGATAGGCTTTTGGGTTCTCTCTTGTAACCGACCCGATCTACAAGGGTTT
GGCCTAGAATAGTTCAGAATCCTC--TAGGAGGATCTCCTCTGCCCCGTTTGTTTTTCTCATTTTCTGCGGTGCTCTTGA
TGGATGGGCAATTATTTTTAAGATGGGGTCGCTCTCTTTTTGCCACTAACTAAAATTTGGAGTTCTTGGCC
>chr4D_853
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----------------------------------------------------CCGGCCCGACCCGACCCCGACCCGACGG
GCGATCGCGGCCGCGTCCACGTCGCTCCTGCCGTCCGTCCCGTAT----------CCCTTTTCCCCACCCCCCACGGGCG
GCCGGCCGGCTCCCGTCGTGCGCCACG-------CCCCCTCTCCTATGGCCTGTGACCCCGACGGCGCCGCCCCATGCCC
GCCCCGCTCATCCCCATCGCGGCGGCCACGGCCGCCGCCACCTCGGCCGTCGGCGTAGCGCTGGGGGTGCGCCTGCTCCT
GCTCCTCTCCCGCTCGCGCGCGCTCAAGCCGCTCGCCGCCACCACGTCCGCGGCCGCGGCCGCGCTCCGGGCGCCGCGGG
TCCTCGCCGCCGCCTCCTCCCCGCTCGCCGCCCTCCTCGC------------CGCCTC------------CAAGTCCTAC
AAGGCGGCGCGCGCGCTCGACCCGGCCGCGCGCCTCCCCTCGCTGCCCTCCTCCAAGCGCGTCAAGGCCGCCTTCGCCGC
CGCCTCCCTCCTCCGCCTCGCCCCGACCCTCCTCCTCCTCCCCGCCGCCGCCTCCTCGC---CCTCCTCCTCCTCCTCCC
CCACCGCCCTCTTCGCGCTCGCGCTGCTCAAGTCCGGATACAAGCTCTCCAAGAACTCCGCCAAGGTCGTCGAGGGCTTC
CTCGGCCTGCAGGTCCACAAGGGCTTCCGCAACGGCGTCGACGCGCTCGGCGTCGTCGTCAAGGTCGCCGTCATCGCCTC
CGAGGTCGCCGTCTGGGTCGGCGGCCGCTTCTGGGGCGCCGACGACGACGGCCGCGGCCGCTGCGTCCGCTTCCTTGGCC
TCACCAGGACGACTACCTTGGTCCTAGCCGGGTCTGCAAAATCTGAAGCCCAGGTTGTGCTCTTCGATCCTGGAACTGCC
GTCGAGATGGAGGACGAGGGGTGCTGGTTGGAGGAGGACCCGGACCCCTCCCTGTTGCTCTGCCTCGCGGTGCCCCTGCC
TGCCTGAGATGGCCAAATTAGTGAGTTAGTTGCAATTAGCACACAGCTGCGTTGTACAGTTGCTTATATCATCAGATGTT
GTATGTAGTCACGTACGCTTTTCAATTTTGATCCAATGCTTGCTTCCTAG-----CTCATGTGTGTTGGTTTTTCAGTTA
GCTGCGACTGCTTGTTTGTGCATTACCCCTCAATCAACAAGTA-AAGTAAATAAAATCGGTGGTTTATGCTCACTACTTG
TCT---C---CATATACCTCTTCAGTTAGCTGTTACTTCTCTGGTTTTATATTGAGTTTGGGAATTTGGTACTATTGATG
ATAGTTTTGCTGATGTAGAGAATTTCAATATGGCAATGCTTCCACCTTCCAGTTTCACTTCTGGAGGGGACGGTGTTTCC
GTTTAACTTGAGATGTTTAAATTATTTAT---GGTCAGGTTGGAACTTTTGCTGGAACCTTAGATGCAGTGTTTCAGTTT
CAGTAAGAATGAAAAATTAATGTATAAGTTAGGATTTTCCCTGTTAACCAACTGCGGATTTTCTATATTGTGGGTCATTG
TTGGATAACTTGAATGCAGGCTGAAACCCATCAATTGAAATGTTTATGTTTTGTTGTCAAGAAGACAAGAACCTCTCACC
ACACTCTTAGCATTACTGAGTACATGATGTAAAAAC-AGTGCCCATTGTTGTGTGCACTTCACCTTTGAGTTCTACTGCA
AACTTTTTCTT-----TAAGTACAACATGTATCTGAAATGAATTATAAGTTTATAACTGCAATTTTTGTTATTTATT--T
ATCTTGGGCCTGTACAATGGGCCTGGTGTTAGATAGGCTTTTGGGTTCTCTGTTGTAACTGACCCGATCTACAAGGGTTC
GGCATAGAATAGTTCAGAATCCTC--TAGGAGGATCTCCTCTGTCCGGTTTGTTTTTCTCATTTTCTGCGGTGCTCTTGA
TGGATGGGTAATTATTTTTAAGATGGAGTTGCTCTCTTTTTGCCACTAGTTAAAATATGGAGTTCTTGGCC
>chr4B_853
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----------------------------------------------------CCGACCCGACCCGACCCA-ACCCAACGG
GCGATCGCCGCCGCGTCCACGTGGCTCCTC----CCGGCAGCATCCCGGGCTCCACCTTTCCCCCCATCCCCCACGACAG
GCGTTTCCGTCGCGTCCCACCCACCGCTCTCCGCCTCTCCCCCCTATGGCCTGTGCTGCCGCCGTCCACTCCCCATGCCC
GCCCCGCTCATCCCCCTCGCGGCGGCCACGGCCGCCGCCACCTCGGCCGTCGGCGTAGCGCTGGGGGTGCGCCTGCTCCT
CCTCCTCTCCCGCTCGCGCGCGCTCAAGCCGCTCGCCGCCACCACCTCCGCCGCCGCGGCCGCGCTCCGGGCGCCGCGGC
TCCTCGCCGCCGCCTCCTCCCCGCTCGCCGCCCTCCTCGCCGCCTCCAAGGCCGCCTC------------CAAGTCCTAC
AAGGCGGCGCGCGCGCTCGACCCGGCCGCGCGCCTCCCCTCGCTGCCCTCCTCCAAGCGCGTCAAGGCCGCCTTCGCCGC
CGCCTCCCTCCTCCGCCTCGCCCCGACCCTCCTCCTCCTCCCAACCGCCGCCTCCTCGC---CCT---------CCTCCC
CCACCGCCCTCTTCGCGCTCGCGCTGCTCAAGTCGGGGTACAAGCTCTCCAAGAACTCCGCCAAGGTCGTCGAGGGCTTC
CTCGGCCTCCAGGTCCACAAGGGCTTCCGCAACGGCGTCGACGCGCTCGGGGTCGTTGTCAAGGTCGCCGTCATCGCCTC
CGAGGTCGCCGTCTGGGTCGGCGGCCGCTTCTGGGGCGCCGACGACGATGGGCGCGGCCGCTGCGTGCGCTTCCTCGGCT
TCACCAGGCCCGGCAGCCTTGTCCTAGCCGGGTCTGCAAAATCTGAAGCCCAGGTTGTGCTCTTCGACCCTGGAACTGCC
GTCGAGATGGAGGACGAGGGGTGCTGGTTGGAGGAGGACCCAGACCCCTCCCTGTTGCTCTGCCTCGCGGTGCCCCTGCC
TGCCTGAGACGGCCAAATTAGTGAGTTAGTTGCAATTAGCACACAACTGG--TGTACATTTGCTTATATCATCAGATGTT
GTATGTAGTCATGTACGCTTTTCAATTTTGATCCAATGCTTGCTTCGTACTAGCTCTCATCTGTGTCAGTTCTTCAGTTA
GTCGCCACTC----CTTGTGCATCACCCCTCAACCAACAAGTAAAAGTAAATAAAATCGGTGGTTTATGCTCACTCCTTG
TCT---CCATCATATACCTTTTCAGTTAGCTGTTACTTCTCGGGTTTTATATTGAGTTTGGGAATTTGGTA---TTGATG
ATAGTTTTGCTGATGTAGAGAATTTCAATATGGCAATG-------CTTCCGGTTTCACTTCTGGAGGGGAGGGTGTTTCC
GTTTAACTTGAGATGTTTAAATTATTTATTATGGTCAGGTTGGAACTTTTGCTGGAACCTTAGAAT--------------
--GAAAGAATGAAAAATTAATGTATAAATTAGGATTTTCCCTGTTAACCAACTGCGGATTTTCTATATTGTGGGTTATTG
TTGGATAACTTGAATGCAAGCTGAAACCCATCAATTGAAATGTTTATGTTTTGTTGTCAAGAAGGCAAGAACCTCTCACA
ACACTCTTAGCATTACTGAGTACATGATGTAAAAA-TAGCGCCCATTGTTCTGTGTACTTCACCTTTGAGTTCTACTAC-
AACCCTTTTTTTTAAATAAGTACAACATGTATCTGAAATGAATTATAAGTTTATAACTGCAATGTTTGTTATTTCTT--T
ATCTTGGGCCTGTACAATGGGCCTGGTGTTAGATAGGCTTTTGGGTTCTCTCTTGTAACCGACCCGATCTATAAGGGTTC
GGCCTAGAATAGTTCAGAGTCCTCTATAGGAGGATCTCTTCTGTCCCGTTTGTTTTTCTCATTTTCTGCGGTGCTCTTGA
TGGATGGGCAATTATTTTTAAGATAGAGTTGCTCTCTTTTTGCCACTAACTAAAATATGGAGTTCTTGGC-
>chr4A_1039
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--------------------------------CGCCGCAACCTCGGCCGTCGGCGTAGCGCTGGGGGTGCGCCTGCTCCT
CCTCCTCTCCCGCTCGCGCGCGCTCAAGCCGCTCGCCACCACCACCTCCGCCGCCGCGGCCGCGCTCCGGGCGCCGCGGC
TCCTCGCCGCCGCCTCCTCCCCGCTCGCCGCCCTCCTCGCCGCCTCCAAGGCCGCCTC------------CAAGTCCTAC
AAGGCGGCGCGCGCGCTCGACCCGGCCGCGCGTCCCCCCTCGCTGCCCTCCTCCAAGCGTGTCAAGGCCGCCTTCGCCGC
CGCCTCCCTCCTCCGCCTCGCCCCGACCCTCCTCCTCCTCCCCGCCGCCGCCGCCTCCCCCTCCTCCTCCTCCTCCTCCC
CCACCGCCCTCTTCGCGCTCGCGCTGCTCAAGTCCGGCTACAAGCTCTCCAAGAACTCCGCCAAGGTCGTCGAGGGCTTC
CTCGGCCTGCAGGTCCACAAGGGCTTCCGCAACGGCGTCGACGCGCTCGGGGTCGTCGTCAAGGTCGCCGTCATCGCCTC
CGAGGTCGTCGTCTGGGTCGCCG---------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-------S--------------
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-------------------------S-----------S------------------------------------------
--------------------------------------------S-----------------------------------
---------------------------------------------------------S----------------------
----------------------------------------------------------SSSSSSSSSSSS----------
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------------------------------S-------------------------------------------------
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--------------------------------------------------------------S-----------------
-------------------------S--------S-----------------------------------S-------S-
---------------------------S-------------------S--------------------------S-----
-----------------------S-------------------------S------------------------------
----------------S---------------------S-----------------------------------------
------------------------------------------S-------------SS-----------SS---------
---SSS--------------------------------S--------------------S--------------------
--------------S---------S--------S----------------------------------------------
--------------S-------------------------------------------------S----S----------
---------------------------------------S----S----------S------------------------
---------------S----------------------------------------------------------S-----
-----------S-----------------------S------------S-----S------------S------------
-----------------------SS------------------S-------------------S-------------SS-
-------------------------------------------------------------------------------S
-------------------------------------------S------------------------------------
--------------------------S--S--------------------------S--------------
>forward_434
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--------------GAGGGTCTGGTTATAGCCGC----------------------------------------------
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>reverse_1715
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----------------------------------CGCAAAATCTGAAGCCCAGG--------------------------
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>forward_792
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----------------------------------------------------CACCTCCTGCTGCATATCCC--------
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>reverse_2827
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--------------------------GGTCGCTCTCTTTTTGCCAC-------------------------
