>input_sequence_68920
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---------------------------ATGAGCTCGGCATCGCCATTCCCACCCCCCTCGCCGCCGC---CGCCGTCGTC
GAGCGCTAGCGTCCCGATGGTGATGATCACCGTGGTGGGCATACTCGCGGCGTTCGCGCTGCTGGCGGGCTACTACGCGT
TCGTCACCAGGTGCCAGCCGCTCCGCGCGCTGCTCTCGCGCGGCGGCCCGG---CGTCGGTGACCCCCGGCACTTCCCCG
CCCGCGGTGGCCGAGGAGAAGCGAGGCCTCGGGCTGCCGCTCATCCGCATGCTCCCGGTCGTCAGGTTCACGGCGGCGGA
GGACGCGATGGCGCCGAGGATATCCGTGTCGGAGTGCGCCGTCTGCCTGAGCGAGTTCGCGGAGCGGGAGCGCGTGCGCC
TGCTGCCCGGCTGCTCCCACGCCTTCCACATCGACTGCATCGACACCTGGCTGCAGGGCAGCGCCCGGTGCCCCTTCTGC
CGGAGGGACGTCACCCTGCCGGCCCCGCACCCGCAATACCATCGGCGGCCGCCGTCCTTTCGCCGTCGGGACGAGCAGCT
CCCGACCAGCGGCAACGACG---ACGA---CGGCGGCGCCAGCATCGTGATCGAGGTGAGAGGGCAGCGCGAGACCTGGT
CCGACGGCAGGAGGGGCCGGAAGAAGAAGGCGGAGAGCGTGGGCGACGAGGCGGTGGACACGAGG---AAGAATGGGGAG
TTCGCGGCGGTGCAGCCGATGCGGCGGTCGCTCTCCATGGACTCGTGCGACGCCAAGCAGCGGCAGCTCTACGTGTCCGT
CGTCCGGGAGTTCCTCGAGCAGAGATAG----------------------------------------------------
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>chr4B_1_TraesCS4B01G316600
AATAACAAAGGTACATGCACACTGTTGCACATGTATATATATTTTTAGCACTTGTTGCACATGTATTGGTCTCACTCAAC
AGGCGGCAGTTGAA----GAAAACAGGTCGTCCCCTCTCGACGGGCCCAGCCTAGCAGCCAGCGGGGGAGGCGGTGTAAT
GTAACGCATGTGAGTGATGTACCGCCAGTGTGCAGTGCAGGTAGCGTAAATGGCCGTGGTGCCTCCCGAAGAGGGAGCCC
GTACAACGTACGAACCTTCCCTCCCTCG------------------------------------------GTGTAACAGT
TGAGCTCGTCCTGTTACT-----AGGGGAATTTGGCCACTACTAAGCACATGCAGTGACTTCTTTTTTTTTTTTTTGAGA
ATCAGCACATGCAATGACTGTG----------------------------------------------------------
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------------------------------------CAGCTTTGTGTGCGCATGGGTCGAAATTAGTCACCTGCCGTGCC
CGGACCCAACATCGAAAGCACGGGGTCTTTCTCCTGCGCCTGATTGTCAACCCAAAAAACAACTCCCTTGGACAAATTGG
TCACGCGATCTCTGCCTCTG-------TGGTTAGTGGTTACCCGTGTGCACGTACTGCATACGGCGCGTACGGCACTTGT
GCTGTACAAAATGCGCTGCTTTTTTCTTTCGCCAACTGCCAGTGCCAGCCAGCCATATAAACGCGAGACTGCAAGGGTCG
CTCGTGC------------------CGTGCGAGCGCGAGCGTTCAGTCTCGACGACGCCGCTGTGCATCCCCAGACACGT
GCCAAACCTCTGATGATTAGGCAGAGGCGCTGAGGA------GAAATGGAAAACTCCGTGCCTTCCTTTTCCTCCTGTGA
AACCCAATCCC-----------CGCTAGCGAGTCCTCTTGGCTTCAGCCTTCTCGCTCCGCTCGCTGCACCCAGCTGTTG
CGCCATCGGTTGTCTGTCAGTGCTCGGTACAGAGAGCCGCTCCACGTCTCTCTCG---------------GCCTTCTCTT
TCCGCCTTTAACTGTA-------------------------TCCGTCCGACCGGATAGCGAGGCCGGGCGAGAGCGCGCG
CAAGCCAGCCAGCCAGCTACCTACAAGATGAGCTCGGCATCGCCATTCCCACCCCCCTCGCCGCCGC---CGCCGTCGTC
GAGCGCTAGCGTCCCGATGGTGATGATCACCGTGGTGGGCATACTCGCGGCGTTCGCGCTGCTGGCGGGCTACTACGCGT
TCGTCACCAGGTGCCAGCCGCTCCGCGCGCTGCTCTCGCGCGGCGGCCCGG---CGTCGGTGACCCCCGGCACTTCCCCG
CCCGCGGTGGCCGAGGAGAAGCGAGGCCTCGGGCTGCCGCTCATCCGCATGCTCCCGGTCGTCAGGTTCACGGCGGCGGA
GGACGCGATGGCGCCGAGGATATCCGTGTCGGAGTGCGCCGTCTGCCTGAGCGAGTTCGCGGAGCGGGAGCGCGTGCGCC
TGCTGCCCGGCTGCTCCCACGCCTTCCACATCGACTGCATCGACACCTGGCTGCAGGGCAGCGCCCGGTGCCCCTTCTGC
CGGAGGGACGTCACCCTGCCGGCCCCGCACCCGCAATACCATCGGCGGCCGCCGTCCTTTCGCCGTCGGGACGAGCAGCT
CCCGACCAGCGGCAACGACG---ACGA---CGGCGGCGCCAGCATCGTGATCGAGGTGAGAGGGCAGCGCGAGACCTGGT
CCGACGGCAGGAGGGGCCGGAAGAAGAAGGCGGAGAGCGTGGGCGACGAGGCGGTGGACACGAGG---AAGAATGGGGAG
TTCGCGGCGGTGCAGCCGATGCGGCGGTCGCTCTCCATGGACTCGTGCGACGCCAAGCAGCGGCAGCTCTACGTGTCCGT
CGTCCGGGAGTTCCTCGAGCAGAGATAGGCGAGTGCCACAGTATGACA-------GTAGTACATTCA------------T
ACCATTCTTTCTTCGATTCGATCGATCGATT------GTACATTGGCCTTCGTACGTTGCTGTAGCGGTGGTAGGCCTA-
CGTACATACGTACGTGTAAATCCGCTCCTCGACCGCGTCTAGATGCATGGCATGGCATGGCATGGCGGTCGACTCTAATT
TTTT-GTAGGCAGTCCATATGTACGCTGGCAATTAAGCAAGTAGTAGTAAGTTGTAGTAGAAGCAGCACCGGAGCATTTT
TCGCAACCGAGTGCAGACTTTTCGTGGGAGCTCGGTATTTT-----GAACAAAAGGCATATTTAAAAGTTTCGAAAAAAT
ACGATTTTTTTTCATGGTTATGTGTTACAGTTTTGCTAGAACTCATCTAGATGAGATATAATTTGGTCTCATTCACCTTT
TACAGTCATTGGATGTGATGCTATAAGATGCGTGTGTGCTGACGTGGGTTGTATTTGTTCTTGTTTTCAAAGTGAATGAG
ACCAAATTATATCTCATCTAGATGAGTTCTAGGTACTCCCTATGTGTTATGCACGAACATGTGAAATTTCGATTAAAAAT
ATTGTGATTTGTAGGCTGTACCAAAAAAAAGAAGGT-----------------------GCCCATTTTGAAAATATGCAT
TTGTCTTTTTTCTGCACGCCAGGTGTGAAAGTATAATGTTGTG-------------------------------------
-----------------------GAAATTTGAATTTTGAAAAAGACCTCCCTATAGCTCGAGCGCAGTTGGCATTTTTCG
CAACGATGCATGACTATTCACAGGGGAGAAACAACGGG---TAGTATCTACGTACTACTGTAGCATCGTAGCTATGATGG
GTGTGGTTGTGCGGTGTACGTACGTGTTGTGGCCGGTGGGCAGCCGAGCCGTGCGCGCTAGCTTGCTAGGCGCGGCGTTG
TTTGCACGTCTCTTTCGTATGGATCTTACGCTTTACAGTTGGAGGGTGGATGGATCGATCGATCGCATGCCTCTCCCTCC
--GTGGGACCTTAATTAGCCCATGATAC
>chr4A_3
--TAACAAGGGTACACGCACTATGTTGCACATGTTTTTTTTTGTGGGACA------------GTCTTGGTCACACTCAAC
AGGCGGCAGTTGAATGAAGAAAACCGACCGGCCCCTCTTGATGGGCCCAGCCCAACAGCCAGCAGGGGAGGCGGTGCAAT
GTAACGCATGTGCGTGATGTACCGCCACTGTGCAGTGC-----------ATGGCCGTGGTGCCTCCCGAAGAGGGAGCCC
GTACGGCGTTTAGAGGTAAACAGACAGAAAACAAGG--------------------------------------------
--------------------------------------------AGCAAATCAACAAACATTGTTTTTCTGTTTTGCCGT
CGACGTATTCCCGGCTTAAATTTAGGTCGTATTTGCGTCGAAATAGGCAGCGCAGAGACAGGTGGGATGCGTGCCCTTAT
CGCGTCTAGAAAAACGACCGGCCGCCACAATTTCATTGCCCTATTCAAACAGACAAAATCTAAATAAAACGGACGTTCGT
TTAGGATTTGGGTTAGAGTTGGCCTCAGATACCGATCAGGTTTGTGTGATCT----------------------------
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-----------------------------------------CC--GGGCACGTACCAAGGTAGAGT--------------
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-----------------------------------------------------------------------------AGT
ACCAGACCTCTGATGATTAGGCAGAGGCGCCGAGGAGAAATGGAAATGGAAAACTCCGTGCCTTCCTTTTCCT---GTGA
AATCCAATCCCCGCTACGTTATCGCTAGCGAGTCCTCTTGGCTTGAGCCTTCTCGCCTCGCCCGCTGCACCGTGCTGTTG
CGCCATCGGTTGTCTGTCAGTACTCGCTACAGAGGGCCGCTCCACGTCTCTCTCGGCCGGACGGAATCCCGCCTTCTCTT
TCCGCCCTTAACTGTAATCCGTCCATCCGTCCGTCCGTCCGTCCGACCGGCCGGATAGCGAGGCCGGCCGAGAGC-----
--AGCCAGCCAGCCGGCTACCTACAAGATGAGCTCGGCATCGCCATTCCCACCCCCCTCGCCG---------------TC
GAGCGCGAGCGTCCCGATGGTGGTGATCACCGTGGTGGGGATACTCGCGGCGTTCGCGCTGCTGGCGGGCTACTACGCCT
TCGTCACCCGGTGCCAGCCGCTCCGCGCGCTGCTCTCGCGCGGCGGCCCCACGACGTCGGTGAGCCCCGGCCCCTCCCCG
CCGGCGGCGGCCGACGAGAAGCGGGGCCTCGGGCTGCCGCTCATCCGCATGCTCCCCGTCGTCCGGTTCACGGCGGCGGA
GGACGCGGCGGCGCCGAGGATCTCCGTGTCGGAGTGCGCCGTGTGCCTGAGCGAGTTCGCGGAGCGGGAGCGCGTGCGGC
TGCTGCCCGGCTGCTCCCACGCCTTCCACATCGACTGCATCGACACCTGGCTGCAGGGCAGCGCCCGGTGCCCCTTCTGC
CGGAGGGACGTCACCCTGCCGGCGCCGCACGCGCAATACCATCGGCCGCCGCCGCCCTTCCGCCGTCGGGACGAGCAGCT
CCCGACCAGCGCCACCGGCGGCAACGA---CAACGGCGGGAGCATCGTGATCGAGGTGAGAGGGGAGCGCGAGACCTGGT
CCGACGGCAGGAGGGGCCGGAAGAAGAAGGCGGAGAGCGTGGGCGACGAGGCGGTGGACACGAGGACGAAGAAAGGGGAG
TTCGCGGCGGTGCAGCCGATGCGGCGGTCGCTCTCCATGGACTCGTGCGACGCCAAGCGGCGGCAGCTCTACCTGTCCGT
CGTCCGGGAGTTCCTCGCGCAGAGCTAGGCAGGCGTCGTCGTAGCAGCGGTGGTGGTAGTACATTCATCATACATACAGT
ACCATTCTTTCTTCGAC-----CGATCGATTGTAGTAGTACATTAGCCTCCGTACGTTGCTGTAGCGGTGGTACGCGTAG
CGTACGTAGGCACGTGTAAATTCACTCCTCGACCGCGGCTAGATGCATGGC----------ATGGCGGTCGTCTCTAATT
TTTT-GTGGGCAGTCCATATGTACAAGGGCAATTAAGCAAGT--------------------------------------
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>chr4D_66
-----------------------------------------------------------------TTGGTCTCACTCAAC
AGGCGGCAGTTGAA----GAAAACCGGTCGGTCCCCCTTGATGGGCCCAGCCCAGCAGCCAGC------------GTAAT
GTAACGTATGTGAGTGATGTACCGCTACTGTGCAGTGCAGGTGGCGTAAATGGCCGCGGTGCCTCCCGAAGAGGGAGCCC
GTATAACGTACGAACCTTCCCTCCCTCGCTCCTCTGTTTCCATCTCGCCCATTTCCCAGTCCATCGGTCAGTGTAACAGT
TGAGCTCGTCCTGTGTCCGTCCCAGGGGAATTTGACCTCCACTAAGCACATGCAGTCACTGTGCGGC-------------
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------------------------------------------TGCGTGCGCATGGGTCGAAATTAATCACAACG------
-----------TCGAAAGCACGGGATCTTTTTCCTGCGCCTGATTGTCAACCCGAAAAACAACTCCCTTGGACAAATTGG
TCACGCGACCTCTGCCTCTCTTTGTATTGGCTAGTGGTTGCCC--GTGCACGTACCGCATACGGCGCGTACGGCACTTGT
GCTGTGCAAAATGTGCTCCTTTCTTCTTCACCTACTCAACT------GCCGCCCATATAGACGCGAGACTGCAAGGGCCG
CCCGTGCCTCAAATACGTACCGGGTCGTGCGATCGCGAGCGTTCAACCTCGACCCC------GTGCATCCCCAGGCAAGC
ACCACACCTCTGTAGCGGAACCTCACGCTTCG------------------------------------------------
--------------------------------------------------------CTCGCTCGCGGCACCGTGCTGTTG
CGCCATCGGTTGTCTGTCAGTACTCGGTGCAGAGAGCCGCTCCACGTCTCCCTCG---------------GCCTTCTCTT
TCCGCCTTTAACTGTA-------------------------TCCGTCCGACCGGATAGCGAGGCCGGGCGAGAGCGCGCG
CAAGCCAGCCAGCCAGCTACCTACAAGATGAGCTCGGCATCGCCATTCCCGCCACCCTCGCCGCCGCCGCCGTCGTCGTC
GAGCGCGAGCGTCCCGATGGTGGTGATCACCGTGGTGGGGATACTCGCGGCGTTCGCGCTGCTGGCGGGCTACTACGCGT
TCGTCACCAGGTGCCAGCCGCTCCGCGCGCTGCTCTCGCGCGGCGGCCCGG---CGACGGTGAGCCCCGGCGCCGCCCCG
CTGGCGGCGGCCGAGGAGAAGCGGGGCCTCGGGCTGCCGCTCATCCGCATGCTCCCCGTCGTCAGGTTCACGGCGGCGGA
GGACGCGATGGCGCCGAGGATCTCCGTGTCGGAGTGCGCCGTGTGCCTGAGCGACTTCGCGGAGCGGGAGCGCGTCCGGC
TGCTGCCCGGCTGCTCCCACGCCTTCCACATCGACTGCATCGACACCTGGCTGCAGGGCAGCGCCCGGTGCCCCTTCTGC
CGGAGGGACGTCACCCTGCCGGCCCCGCACCCGCACTACCATCGGCCGCCGCCGGCCTTTTGCCGTCGGGACGAGCAGCT
CCCGACCAGCGGCAACGACG---ACGGCGGCGGCGGCGGCAGCATCGTGATCGAGGTCAGAGGGGAGCGCGAGACCTGGT
CCGACGGCAGGAGGGGCCGGAAGAAGAAGGCGGAGAGCGTGGGCGACGAGGCCGTGGGCACGAGGAAGAACGA---GGAG
TTCGCGGCGGTGCAGCCGATGCGGCGGTCGCTCTCCATGGACTCGTGCGACGCCAAGCAGCGGCAGCTCTACGTGTCCGT
CGTCCGGGAGTTCCTCGAGCAGAGCTAGGCGAGTGCCACAGTATGACA-------GTAGTACATTCA------------T
ACCATTCTTTCTTCGATTCGATCGATCGATT------GTACATTGGCCTTCGTACGTTGCTGTAGCGGTGGTAGGCCTA-
CGTACGTACGTAC--GTAAATCCGCTCCTCGACCGCGTCTAGATGCATGGC----------ATGGCGGTCGACTCTAATT
TTTTTGTAGGCAGTCCATATGTACGCTGGCAATTAAGCAAGTAGTAGTAAGTTGTAGTAGAAGCAGCACCGGAGCATTTT
TCGCAACAGAGTGCAGACTTTTCGCGGGAGCTCGGTATTTCTAAAAGAACAAAAGGCATATTTAAAAGTTTCCAAAAAAA
CCATGGAAACATA-------------------------------------------------------------------
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----------------------------------------TATGTGTTATGCACGAACATGTGAAATTTCGATTAAAAAT
ATTGTGATTTGTAGGCTGTACCAAAAAAACAAAATTCGGGCCAACAACAAAAATAAAGGGCCCATTTTGAAAATATGTAT
TTGTCTTTTTT-TGTACGCCAGGTGTGAAAGTATAATGCTGTGAAATTTTGCACATGCGTAGTATACATGTGTTCACAAA
AAAATCGAATTTTTTCCGCTGTCGAAATTTGAATTTTGAAAGCGAGCTCCCTATAGCTCGAGCGCAGTTGGCATTTTTCG
CAACGATGCATGACTATTCACGGGGGAGAAACAACGGATGATAGTATCTACATACTACTGTAGCATCCTAGCTATGTTGG
GTGTGGTTGTGCGGCGTACGTACGTGTTGTGGCCGGTGGACAGCCGAGCCGTGCGCGCTAGCTTGCTAGGCGCGGCGTTG
TTTGCACGTCTCTTTCGTATGGATCTTGCGTTTTACAGTTGGAGGGTGGATGGATGGATCGATCGCATGCCTCTCCCTCC
GTGTGGGACCTTAATTAGCCCATGATAC
>SNPs
SS------S------S----SS------------S-S-S-S-S-SSSS--SSSSSSSSSSSS--S---------------
------------------------S-----S-------S--S----------S----------S----------------
---------------------------S--------------S-------------------------------------
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--------------SS-S----------------S--S-S----------------S----SS-----S-S----SSS-S
SSSS-S-SSSS-SSSSSSSS-S----------------------------------------------------------
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---------------------------------------S-------------------------S----SSSSSSSSSS
SSSSSSSSSSS-------------S-----S----------------------S--------------------------
--------S----------S----------S--------S---SS----------S------------------------
-----S-------S---S----S-----SSS-S-SSSSS-SSSSSSS---SS-------S-----------------S--
-S------------------------------S------------SS------SS-SSSSSS------------S--S--
S---S-------------------------S------------------------------------------SSS----
--S-----------------------------------------S-----------SS-------------SS-------
---------------------S----------------------------------------------------------
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------------------------------------------------------------------------S-------
------S---------------S----------------S----------------------------------------
---------------------------------------------------------------S-------S-S------
--S----S---------------S--------------------------------S-----------------------
---------------------S--------------------S-----------------------------------S-
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----------------------------------------------S-------S-------------------------
--------------------------------------S-------------------------S---------------
-------------------------------------------------------------------------S------
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------------------------S-------------------------------------------------------
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-----S---------------------------------------------SSSSSSSSSS-------------------
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-------S----------------S---------------S-------------------------------S------S
S-SSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------
-----------------------------SS--SS------------------------------------------S--
-----------S--S-----------------------S-----------------------------------------
-----------------------------------------SS--S----------------------------------
---------------------S---------------S-------------S---------------S--------S---
--------------S------------------------S----------------------------------------
---------------------------S--S------------------------S------------------------
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>forward_991
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-----------GATGATTAGGCAGAGGCGCT-------------------------------------------------
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>reverse_2300
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-----------------------------------------------------------GCATGGCGGTCGACTCTAAT-
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