>input_sequence_68915
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------ATGGCCGATGATACCAAGT
TCCTCCTGTGGCTGCTGCTCCTGAGCAGCTCATCGTTGTGCCACGGTTCTGAGCTTGACATCCAGTGCCTGAAGTCCGTA
CAAAAATCAGTGGCCGACCCAAACGGCATCCTCAAATCCTCTTGGAAATTCAACAAGAACGGCCGCAGCGGCTACATATG
CGGATTCACCGGCGTGGAATGCTGGAGCCACGACGATAACAGGGTGCTCACTCTGCGCCTGCCCAACTTGGGACTCCAAG
GGCCGTTCCCCCAAGGCCTCCATGACTGCACGAGCATGATCGCGCTGGACCTCTCAGGCAACGGTTTCTCAGGGCCGATC
CCTTCGCGCATCGCACACGATGCGCCGCACCTGTCGTACCTGGACCTCTCGAACAACAGCTTCTCCGGCGAGATCCCGGA
CGGCATCGCCAACATGGTGTATCTCAACGTGCTCAACCTCGAGTACAGCCGGCTCGACGGCCAGATTCCGGAGCGGTTCA
ACGCGCTTGGCCGGTTAACGACGTTCAGCGTCGCGGACAACCTGTTATCGGGGCCTGTTCCTTCTTTGCTGCGGAAGTTT
CCGGCCTCGCACTTTGCTGGTAACCGTGGGCTCTGCGGTGCGCCGTTGGACGGGTGCCCTGGCAAGAGATGGGGATTGAT
CAC---------GATCAACGACCAGTCTACTGTCGGAGCGGCTGTCGGGTTCGTCGTGGGGTTCGTGGCGGCTTTCTACT
TCCCGCACTGGTTCGGCTTCTCCGGGAGGCCCCGTGCTTGCAGCCTCCGCGTATGA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>chr3D_1_TraesCS3D01G395100
ATTTTCAGAGCAAAATACGTTGAAATGAGGGTTGTGAAGAAAAAACAAATATGGGGTTGTTTAACATGATACTATTCATC
CTTCCGGGCCATGAATTTGTCTTTTTTTTACAAGTCGCAACTCAAGATATTTCATGATGAATTTTTACACACATGTGGGT
TACATCCTTACATACAAGCATATTTTTTCAGAATTTTTTGAACCATTAAAATCTGAATTTGAATTTTTCAAAAATAAAGA
CCTCCGTGAAGCTCGGCCTCCAAAACGCCTCTCTACTCCCTTCGTTTCATAGTTCTTGTTTGATCTAGCTAAAATCACGA
CGAGAGTTATGGAACAGATGAAGTAGTTGAGAAGCGGGCCCATGCGCCTTGTCGGAATGTCACCAATGGGCAGTAGCATT
CTCGCGTTATCATAGTAGTTGCTGCTCAGTCGTTGACTTCTTTTTTCAAATAACACATCGTTGACATTTTCCTAATGCAA
GACACGGTTGCTTAAAACTTGCTCTTTCCAATATTAATATTATCTGATAAAAGCTCTCCTTCCCATTTCCCCGATGCTGC
GTGTCCATGTCTAATGGCTAGGTGATTAACCATCTCGTGCTGACATTCGACCTTGTTGGTTCTTGCCCAACTTCCGCTGC
CTTGTTGCAATGTGCCAACGGCGACAAGAATTGAGGAATTAGCACAAGCAAAGCGGTGCTCCGGTGCCGGGATTCTCTCT
TTTCTACGAGCTCTGATCGTTCAGTCATTCCGGGCGGAGGTTTCTTCTTTGGCTGAATCAATCGGTGAGTGTT-----CA
CCTCATCTTGTCTAAAAAGTACTAATGCATGGAACTG----------------ACGCATGCATTACAATTCGCATCTTCG
GAGGCTGCTTTGTGATGTCTCTGAGCACATTACTTCTTCAGCTGATCTGATTTCAAGTATAGTGTTAGTGTTAAATGTTC
TTACACAAGCTTTGATTTGATCAGGCGATGCTTGGATAATTTCGTTCCCTCCACGATCGCGATGGCCGATGATACCAAGT
TCCTCCTGTGGCTGCTGCTCCTGAGCAGCTCATCGTTGTGCCACGGTTCTGAGCTTGACATCCAGTGCCTGAAGTCCGTA
CAAAAATCAGTGGCCGACCCAAACGGCATCCTCAAATCCTCTTGGAAATTCAACAAGAACGGCCGCAGCGGCTACATATG
CGGATTCACCGGCGTGGAATGCTGGAGCCACGACGATAACAGGGTGCTCACTCTGCGCCTGCCCAACTTGGGACTCCAAG
GGCCGTTCCCCCAAGGCCTCCATGACTGCACGAGCATGATCGCGCTGGACCTCTCAGGCAACGGTTTCTCAGGGCCGATC
CCTTCGCGCATCGCACACGATGCGCCGCACCTGTCGTACCTGGACCTCTCGAACAACAGCTTCTCCGGCGAGATCCCGGA
CGGCATCGCCAACATGGTGTATCTCAACGTGCTCAACCTCGAGTACAGCCGGCTCGACGGCCAGATTCCGGAGCGGTTCA
ACGCGCTTGGCCGGTTAACGACGTTCAGCGTCGCGGACAACCTGTTATCGGGGCCTGTTCCTTCTTTGCTGCGGAAGTTT
CCGGCCTCGCACTTTGCTGGTAACCGTGGGCTCTGCGGTGCGCCGTTGGACGGGTGCCCTGGCAAGAGATGGGGATTGAT
CAC---------GATCAACGACCAGTCTACTGTCGGAGCGGCTGTCGGGTTCGTCGTGGGGTTCGTGGCGGCTTTCTACT
TCCCGCACTGGTTCGGCTTCTCCGGGAGGCCCCGTGCTTGCAGCCTCCGCGTATGATCTTGCCACCTGTTCTGGAACTTT
GTCTGACATTAGCGGCAACTCCAACAGCTATTCTATT---------------------TATTTTGTCTACCGTTTGAACA
GTTATCTTTCACCCGATGCGCAGTATACAAGTCAACTTGGCATGTGCCGCGTGCTGTTGCTTGCAATGGGAAATGCATAT
TTCAACTCTTGTGCAATGGCGTGAGTTGTGATCATAAT------------------------------------------
--------------------------------------------------------------------------------
--------------------CTAACCGAAGCAGCAGAAAAAAAATCAAATGTTAGCTTTTGATGTACGTACTGATGCGCG
CCCACTACCCGAAATCAAG-------------------------GTCAAGCAAACCAGCTGAGACGGCAAAGCTGCGCAC
GCGATCGATTGCTTCCGGTTCTGGGCACTGCTTGACTCATTTCTTTCTTTTTGAGCAAAGGGACTACCCGCCCGCAGATT
CTTCATTCGTTAACGAAACAGTTGAGAGTTTCTACACCACCCGTGAGGGCACTGCTGTCTGCTGTACTACGAC-------
---GTACAGTGCCTTTGAGCTGTCCAAGCTAGAGGATGGGCCTCTCGAATTAACTACCACGGACGCGCTCTGGTTCCATC
ACTGCTGTGTGCTGACCCGTGACTTGGTCAGAGATAGTTCGTTGAAGCGAGAGGGCCATCTCTCGAGTTGCATAGATGGG
TTCCGATGGCGAGGCCATCCATCGACATCCGCAGCGAGACGCACGCCGGAAAGCGCACGCGCACCACGTACGCACGCTCT
ACGCCACTCGCTAGTAGCGGGCGTCGTGGTCAACCTCCCAAGTTAAGAGGATACGGATCGATCCATCCGTGTGCCGACGA
CGCGGGGATCGCTAGCTTGTGTACGTAGGTAGCGTTCGCCTTCCAAAGCGAGAAGCTACGGCGACGCGGTGATTCGCCCC
TAAAGTCCCCGCTCCGCAAAAAAAAAAAACCTAGAACTCATCTAGATGAGATATAATTTAGTCTCATTCATCTGGAAAAC
AAGAACAGATACAACCCACGTCAGCGCATACGCATCTTATGGCATCACATTCAA
>chr3B_289
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATAGTTCTTGTTTGATCTA----AAACCACGG
CAAGAGTT-TGGAACGGATGGAGTAGTTCAGAAGTGGGCCCATGCTCCTTGTTAGAATGTCATGGATGGCCAGTAGCATC
TTCACGTTATCATA-TAGTTGCTGCTCAGTCGTCAACTTCTTTTTCCAAATAACATGTCATTGACATTTTCCTAATGCAA
GACACGGTTGCTTAAAACTTGCTCTTTCCAATAT---TATTATCTGATAAAAGCTCTACTTCCAATTTCCCCGATGCTGC
GTGTCCATGTCTCATGGCTAGGTAGTTAACCATCTCGTGCTGACATTTGACCTTGTTGGTTCTTGCCCAACTTCCGCTGC
CTTCTTGCAATGTGCCAACGACGACAAGAATTGAGGGATTAGCACAAGCAAAGCGGTGCTCCGGTGCAGGGATTCTCTTT
TTTCTAAGAGCTCTGATCGTTCGGTCATTCCGGGCGGAGGTTTCTTGTTTGGCTGGATCAATCGGTGAGTATCTGAAACA
CCTCATCTTGTCTAAGAAGTACCAATGGATGTAACCAAACCAACAAAGCAAGTACGCATGCATTACAATTTGCATCTTTG
GAGGCTGCTTTGTGATGTCTGTGAGCATATTACTTCTTCAGTTCTTCTGTTTTCAAGTATAATGTTAGTGTTAAATGTTC
TTACACAAGCTTTGATTTGATCAGGTGGCGCTTGAATAGTCTCTTCTACTCCACGATCGCGATGGTCGATGAGACCAAGT
TCCTCCTATGGCTGCTGCTCTTGATCAGCGCATCGCTGTGCCACGCTTCCGAACTCGACATCCAGTGTCTGAAATCCGTA
CAAAAATCAGTGGTCGACCCAAACGGCATCCTCAGATCCTCTTGGAAATTCAACAAGAACGGCCGCAGCGGCTACATATG
CGGATTCACCGGCGTCGAATGCTGGAGCCACGACGAGAACAGGGTGCTCTCTCTGCGCCTGCGCAACTTGGGACTCCAAG
GTTCGTTTCCTCAAGGCCTACATGACTGCACGAGCATGATCGCGCTGGACCTCTCAGGCAACGGTTTCTCAGGGCCGATC
CCTTGGCGCATCGCACACGACGCGCCGCACCTGTCATACCTGGACCTCTCGAACAACAGTTTCTCCGGCGAGATCCCGGA
CAGCATCGCCAACATGGTGTACCTCAACGTGCTCAACCTCGAGTACAACCAGCTCGACGGCCAGATTCCGGAGCGGTTCA
ACGCGCTTGGCCGGTTAACGGCGTTCAGCGTCGCCGATAACTTGCTGTCGGGGCCTGTTCCTGCTCTGCTGCGGAAGTTT
CCGGCCTCGCATTTTGTTGGTAACCGAGGGCTCTGCGGTGCACCGCTGGACGAGTGCCCTGGGAAGATATGGGGATTGGT
GCGGATCAGGCAGATCAACGACGAGTCTAGTATCGGAGCGGCTGTCGGGTTCGTCGTGGGGTTCGTGGCGGCCTTCTACT
CCCCGGGCTGGGTCGTCTTCTCCAAGAGGCTGCGTGCTTACGGCTTCCGCGTATGATCGATCCGCGTGTTTTGTCTGTTG
TCAA-----------CAACTCCGACAGCAGATCTGTTTTGACTTTTTTTTGGGTGATTTATTTTGTCTCCCGTTGAAAAA
GTTGGCTTTCACCCGATGAGCCTGTCAAGCAGGCAAAAATAACAAATTTGACCTGAAAGTATTTCACAAACTAAAGTATT
TTTTAAAATATTTCACACCGCTGACCATTTTATACAGCGCCTGACAACAAGGCGTCACACCCTACCGTGCAACTCCTTAG
AGTTAGGCGCTGCACAGTGTAGTGCAACTCCTTAGTGCTAGGCGCTGCACAGGTACGACGTTTAAGTGTTAGGCGCTGCA
CAGTAAAATGCAGCGCCTTGCTGTCAGGCGCTGCACACTAAGAATCAACTGAGTGAAATACTTTCAAAAACAGTTTAGTT
TATGAAATAGTTTGGCCCTCATATCAAATCTGTCTCTTTTGCCTGTCAAGCAAACCAGTTGAAACGGCAAAGCGGCGCAC
GCGATCGATTGCATCCGGTTCTGGGCACTGCTTGACTCATTCCTTTCTGTTTGA--------------------------
-TTGATTCGTTAACGAAAC--TTGAGAGTTTCTACACCACCCGTGAGGGCACTGCTGTCTGCTGCACTACCATGTACAGT
CCAGTACAGTACCTTTGAGCTGCCCAGGCTAGAGGATGGGC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------SSSS---S----S
-S------S------S----S-------S-----S----------S------SS--------SSS----S---------S
S--S----------S------------------SS----------S---------SS--S--------------------
----------------------------------SSS--------------------S-----S----------------
------------S----------SS----------------------S--------------------------------
---S----------------S---------------S------------------------------S----------S-
------S---------------S-----------------------S--------S--------------S-S-------
---------------S------S----S---S---SS---------------------------------S-------S-
--------------------S------S-------------S-SS----S-----------S------------------
-------------------------S-SS-----S---S-S--S-SSS-----------------S------S-------
-------S------------S---S----S-----S---------S---S--S--S-----------S-----S------
-------------S--------------------S---------------------------------------------
---------------S--------------------S------------S------------S-----------------
-SS----S--S--------S------------------------------------------------------------
----S---------------S--------------S-----------------------S--------------------
-S-------------------S-------------------------S--S-----------------------------
--------------------S-------------S--S---S--S-S---------------S--S--------------
-----------S----S---------S--------------S---S------S---------S----S----------S-
SSS-------------------S------S-S----------------------------------------S-------
S----SS----S---S-------SS-----SS-------S-S--S-------------SSS--S-S----S--SSSS--S
SSSSSSSSSSSSSSS-------S-----SSS---S---------------------------------S-----SS--S-
---SS-------------S--SSSSS-SSSSSSS-SSSSSS-SSSSSSSSSSSSSSSS-SS-SSS-SSSSSS-SSSSSS-
--SS-SSS-SS-S--SSSSSS---SSSS-SSSS-S-SS------------------------------------------
--------------------------------------------------------------------------------
----------------------SS-S-SS--S---S-SS--S------S--SSS-SSS-SSS-SS-SSS--S-S-SS-SS
SSSSSS-SSSSSSSS-SSS---------------------------------------S---S----------S------
------------S----------------------------S------S-----SSSSSSSSSSSSSSSSSSSSSSSSSS
S--S---------------SS-------------------------------------------S-----S-S-------
----------S-----------S---S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_255
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------AAAGA
CCTCCGTGAAGCTCG-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>reverse_1802
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AGCCTCCGCGTATGATCTTG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>forward_1420
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TGGACCTCTCGAACAACAGC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>reverse_2610
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AGAGGGCCATCTCTCGAGTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
