>input_sequence_68898
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------ATGGAGGGTTGCTACGAAGGATGCATGCATCGCCTCGAAGATGTGCCTCCACCAACGGACAGGGAGGCCTACTC
GTGGGGGAACAGAGACCACTGGTCATGGAGCAGCATCCCATCGACACTCCCTTTCAATGTGTACCAAATGTTGTCGATCG
CAGTGCATCCGGAGGGAGGAGGGCGCA---CACTGTTTGTATCGGTGGAGGGGGG-TGGAGCCTCGGACCCCTGGACCGA
GGGCAAAGGCGATGGTTACTTGGACGTCTTCGGTGAGGACACCCCCTCCCGCACCTAC----TCCTACGACATCGAGAGC
GGCAAGTGGACGGGCTATTGCGAGTGGGGTCTACCCTTTTTCGGCCAAGTCCACTACGACAAGGAGCTCGACGCATGGGT
TGGGCTCCACAAGGCGCATGGATACTTAGATGGTTACATC----TCCTCATGCGACATCATTTCTCCCACCGAGAGCCCC
GCG----CAGCCGGCCTGGAAGTTCTGCACGGAGAGGTTGTTTGATCCTCATACGGAGGCCATGAGGCTATATAGGGATA
CGCACGTCCCAGCTAGTCTTGCGTACATGGGTGACAG----TACCTATTGTCTCGTCGAGGTTGTGCCTCAAGAAAGATT
TAAGCGGAGGCGCTCCCCCAGCACCGGTAGCAAGTGCATGATCCGTTTGTCGATGTTTCAGCTCAAGTACGGCAAAAACG
GCGAGCTCAGAACCACCGCGCACAGGCCTAACCGCTCTTACCTCTTTCCCAAATATAATGAGGGTTTTCAGGTGCAGGCA
TTCTGGATGTGA--------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G393100
CGAGGTTATTACGTGACAGCGCTGCGTAGTGAGATGAGTTCGCCAGCATTATTTACCATCCGCGAGACCGTGGCTAGCCT
ACACACTGCGTCAAAGCGTCCGTCACTGTAG-TTTTTTTTAGGCAATCGTCACTGTTGGTTGGATTGGGCTATGGCGCCA
CGTTCGGCCTGGTCATGTCTCAGTTTTGGGCTCATCAATCACTCCAATGGCCCGTACTGAGCCCATGATA----ATCCAT
GCACGTTGGCTTCCACTCAAATTAAGGCCCAAAACCAGCAGAGACATCCCTGATCCGTAACGAAGCATTCGCAGTTTCGC
ACCGGAGAACAA------------------------------------------GACGTCCATCGGCCGGAAAAATCGAT
CTCACCAACCCTAGCAGCTCCTAGCAACCACACCCCGGCGCTGAT---CTGCCGGCGCGCGCACCGCAGGCACGATGCTG
CGGCCGTTCCTCGCCAGGCGTCACCCTCGCCATCTCCTCTCCCGTCACCACGAGTGCCA---------CCGCCTGGCCCA
GCTCGGCCGCCGCGCGGACGCGATC------------CCGTCCA------GGAGCTACATGTCGTCCGAGGACGAGACGA
CGGACAGCGACATCGATCGCTGCTCGG----AGGCCAAGGTCGTGACACCTGCCTCTGCGAACAGCCACGGCTGCTCACC
CCCCGGCGACAGGAAGGGACATCTGTACCTGGT-------GCTCGACGACTGGAAGAAGGGCTTCAGCATCCACAAGCTG
GACCTGCACGAC---GACGGCTCGGACGACGGCGACTTGGCCCTGCGGCCTCCGGTCCACCGCCAATCAAGCGAACAAAC
TAATTACTGGAGCTTCGCCGCCGTTGGCAGCAACATCATCGCCACGGGAAATCTAAGTTCCC---CGGGGACAG------
----GTTGCGTCACCCTCGCGTACGACACCGAGTCTGCGGGGCTG-------TCTATCATCCCTGATCTTCCAAAACCAT
TGCATGGTCACTGGATCCA----CGCGGCGGCGGCCGGGAACAAGCTGTACAC-----------CTTCGTGGGTGACTTG
GATGATATGGAGGGTTGCTACGAAGGATGCATGCATCGCCTCGAAGATGTGCCTCCACCAACGGACAGGGAGGCCTACTC
GTGGGGGAACAGAGACCACTGGTCATGGAGCAGCATCCCATCGACACTCCCTTTCAATGTGTACCAAATGTTGTCGATCG
CAGTGCATCCGGAGGGAGGAGGGCGCA---CACTGTTTGTATCGGTGGAGGGGGG-TGGAGCCTCGGACCCCTGGACCGA
GGGCAAAGGCGATGGTTACTTGGACGTCTTCGGTGAGGACACCCCCTCCCGCACCTAC----TCCTACGACATCGAGAGC
GGCAAGTGGACGGGCTATTGCGAGTGGGGTCTACCCTTTTTCGGCCAAGTCCACTACGACAAGGAGCTCGACGCATGGGT
TGGGCTCCACAAGGCGCATGGATACTTAGATGGTTACATC----TCCTCATGCGACATCATTTCTCCCACCGAGAGCCCC
GCG----CAGCCGGCCTGGAAGTTCTGCACGGAGAGGTTGTTTGATCCTCATACGGAGGCCATGAGGCTATATAGGGATA
CGCACGTCCCAGCTAGTCTTGCGTACATGGGTGACAG----TACCTATTGTCTCGTCGAGGTTGTGCCTCAAGAAAGATT
TAAGCGGAGGCGCTCCCCCAGCACCGGTAGCAAGTGCATGATCCGTTTGTCGATGTTTCAGCTCAAGTACGGCAAAAACG
GCGAGCTCAGAACCACCGCGCACAGGCCTAACCGCTCTTACCTCTTTCCCAAATATAATGAGGGTTTTCAGGTGCAGGCA
TTCTGGATGTGATGGAGGTTGTATGGCACCACGTGTTGAATGCAT---GGCACATGGTTAAAATTAATTTGAATCTCCTG
TGAATTGCTACAATATCTATGAGGTTGTCTGGTGGGTGCTTGTTAAATGCTTAATTTTCCAGATCATTACATATGTTCTA
GCTAGACACACTTTAAGTTGGA---------------------CTACATGAATTTCTGGTGCCTGGGAAGAAGTGAAACT
TGTATAATCTGTTTCAATGTTTTGAGAAATAATTATCTTGCAATTAACAAACACTAGAGGCGTAAATGCAC----CTGCG
TCGCTTAGGTTGTAACTGTTTTGTCTAGTGTGCTTTCATGCCCCCCT---------GAATTTTCGGTTGT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GGTGCATGAGT
AAAGCGCTGAATTTCGTCCTCTCTATTTTGGGTGATTTCTAAAATCGAGCTTTGTTGTGCAAATATGGCATGCGACCATG
CGCTGAGTCCAATGCATTTT-GAGGTGGAGGCCATCTTCATTTTTTTTTGGAGAATCGGATCTCCATATCTAGATGAATA
ATTGTGAGTTGGTCGTGGCATCACATCATTAAACTATAAAGCACAAAAGATAGCTAATAAAAAGAAAATTTATACAATAC
ATGTTGTGAAGAGGCGATCTCTCGTGATATGAAAACCCAGTGTTGATTCAACTAAAGCACATGCCCCACAAACAATTATG
GTTCTTCCATGTGACAATTGATTTCTCCATGATTCCACGACTTCTTGGAACCAGAATGATTTGCTGGACTTTTGTACACG
AAGAAGTGAATAAAACACCGATAGCAATGCTAAATAGGAGAATTTTATCCCAC----CGCGCACCAATACTTTGGCATTG
TACTAAATTTATGGGTCAAGATTGATCACATAATTGATAATATCCAATAAACACACCTATGTGAGCCAGTTTAGCTGCCC
ATCACAATTACCTAATCTGGCAAGAAACAAATGAGAATAATTTAGAGTGTAGAGTATCCTTTAATAATTAAGGTTCATGG
TAACCCAGGAATG
>chr1B_71
TGA----------------------------------------------------------------------CTAGCCT
ACACACTGCGTCAAAGCGTCCGTCACTGGTTTTTTTTTTGAGGCAACCGTCACTGTTTGTTGCATTGGGCTAT---GCCA
CGTTCGGCCTGGTCATGTCTCAGTTTTGGGCTCATCAA------------CCCGTACCGAGCCCATGATA----ATCCAT
GCACGTCGGCTTCCGCTCAAA----GGCCCAAAACCAGCGGAGCTGTCC--GAACCGTAGCGCAGCATTCGCAGTTTCGC
ACCGGAGAATAA------------------------------------------GATCTCACG-----------------
-----CAACCCTAGCAGCTCCTAGCAACCAC--CCCGGCGCTGATCAGCTGCCGGCGCGCGCACCGCACGCACGATGCTG
CGGCCGTTCCTCGCTGGCCGTCACCCTCGCCATCTCCTCTCCCGTCGCCACGAGTGCCG---------CCG---------
CCTTGGCCGCCGCGCGGACACGATC------------CCGTCCC------GGAGCTACATGTCGTCCGAGGACGAGACGA
CGGACAGCGACATCGATCGCTGCTTGG----AGGCCAAGGTCGTATCACCTACCTCTGCTAACCGATACGGCCGCGCGTC
C------------------CATCTGTACCTGGT-------GCTCGACGACTGGAAGAAGGGCTTCAGCATCAACAAGCTG
GACCTGC---AC---GACGGCTCGGACGGCGGCGACTTGGCCCTGCGGCCTCCGGTCCACTGCCAATCAAGCGAACAAAC
TAAGCACTGGGGCTTCGCTGCCGTTGGCAGCAACATCATCGCCACCGGAAATCTAAGCTCCT---CGGGGAGAG------
----GTTGCGTCACCCTCGCTTACGACACCGAGACAGCGGGGCTG-------CCTATCATCTCTGATCTTCCGAAACCAT
TGCATCGTCATTGGATCCA----CGCCGCGGCTGCCGGGAACAAGCTGTACGC-----------CTTCGTGGGCAACTTG
GATGATCAGGAGGGTTCCTACAAAGGATGCATGCATCGCCTCGAAGATGTGCCTCAGCCGACGGACAGGGAGGCGTACTG
CTGGGCAAAAAGAGACCACTGGTCATGGAGTAGCATCCCTTCTACACTCCCTTTCAACGTGTACCATATGTTGTCGATCG
CAATGCATCCAGAGGGAGGAGGGCGCA---CACTGTTTGTATCCGTGGAGGGGGG-TGGAGCCTCAGACCCCTGGAGCAA
GGGCAAAGGCGATGGTTACTTGGACGTCTTCGGTGAGGACAACCCCTCCCGCACCTAC----TCCTACGACATCGAGAGC
GGCAAGTGGACGGGGCATTGCGAGTGGAGTCTACCCTTTTTCGGCCAAGTCCACTACGACAAGGAGCTCGACGCATGG-T
TGGGCTCCACAAGGCGCATGGAGACCCAGATGGCTACATC----TCCTCCTGCGACGTCATTTGTCCCAACGAGAGCCCC
GCG----CAGCCTGCCTGGAAGTTATGAGCGGAGAGGTTGTTCGATCCTCATGCGGAGGCCATGAGGCTATACAGGGATA
GGCCCATCCCAGCTAGTCTTGTGTACATGGGTGACAG----TACCTATTGTCTCGTCGAGGTTGTGCCTCAAGAAAGATT
TAAGCGGAGGCGATGCAACAGCACCGGTAGCAAGTGCATGATCCGTTTGTCGATGTTTCAACTCAAGTACGGCAAAAACG
GCGAGCTCAGAACCACCGCGCACAGGCCTAACCGCTCCTACCTCTTTCCCAAATATAATGAGGGTTTTCAGGTGCATGCA
TTCTGGATGTGATGGAGGTTGTATGGCACCATGTGTTGGATGCAT---GGCGCATGGTTAAAATTAATTTGAATCTCCCG
TGAATTGCTACAATATTTATGAGGTTGTCTGGTGGGTGCTTGTTAAATGCTTAATTTTTCGGATCATTACATGTGTTCTA
GCTAGACACACTTTAAGTTGGACTATACGAACTTTAAGTTGGATTACATGAATTTTTGGTGTCTGGGAAGAAGTGAAACT
TGTATGATCTGTTTCAATGTTCTGAGAAATAATTATCTTGCAATTAACAAACACTAGGGGCGTAAATGCAC----CTGCG
CCGCTTAGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGCATGAGT
AAAGCTCTGGATTTCATCCTCTCTATTTTGGGTGATTTCTAAAATCGAGCTTCGTTGTGCAAATATGGCATGCGGCCATG
CTCCGAGTCCAATGCATTTT-GAGGCGGAGGCCATCTTCATTTTT---TGGAGAATCAGATCTCCAAATCTAGATGAATA
ATGGTGAGTTGGTCGTGGCATCATAACATTAAACTATAAAGCAGAAAAGATAGCTAATAAAAAGAAAAATTAGACAATAC
AGGTTGTGAAGAGGCGATCTCTCGTGATATGAAAACCCAGTGTTGATTCAACTTCAGTACATGCACCACAAACAATTATG
GTTCTTCCATGTGACAACTGATTGCTCCATGATTCTAAGACTTCTTGGAACCAGAATGATTTGCCGAACTTTTGTACACG
GAGAAGTGAATAAAACACCGATAGCAATGCTAAATAGGAGAATTTTATCCTAC----CGC----CAATACTTTGGTATTG
TACTAACTTTATGGGTCAAGATTGATCACATACTTGAGAATATCCAATAAACACACCTTTGTGAGCCAGTTTAGCTGCTC
ATCACAATTACCTAATCTAGTAAGAAACAAATGAAAATAATTTAGAGTGTAGAGTATCCTTTAATAATTAAGGTTCATGG
TAACCCAGGAATG
>chr1A_191
TCATCATACTCC--------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------ATGCCCCGTACTGAGCCCATGATAATCCATCCAT
GCACGTCGGCTTCCACTCAAATTAAGGCCCAAAACCAGCAGAGCTATCCCTGATCCGGAACGCAGCATTCGCAGTTTCGC
ACCGGAGAACAACACGTCAATCGGCCAAAAAAAAGTCTATCGGCCGGAAGAATCGATCTCACG-----------------
-----CAACCCTAGCAGCTCCTAGCAACCACACCCTGGCGCTGAT---CTGCCGGCGCGCGCACCGCAGGCACGATGCTC
CGGCCGTTCCTCGCTGGGCGTCACCCTCGCCATCTCCTCTCCCGTCGCCACGAGTGTCG---------CCG---------
CCTTGGCTGCCGCGCGGACACGATC------------CCGTCCG------GGAGCTACATGTCGTCTGAGGATGAGACGA
GGGACAGCCACATTGATCGCTGCTCGG----AGGCCAAGGTCATGACCCCTGCCTCTGCTCACCGATACGGCCGCACGTC
CGCAGGCTACAGGAAGGGGCATCTGTACCTGGT-------GCTCAATGACTGGAAGAAGGGCTTCAGCATCCACAAGCTG
GACCTGC---AC---GACGGCTCGGACGGCGGCGACTTGGCCCTGCGGCCTCCCGTCCACCGCCAATCAAGCGAACAAAC
TAATTACTGGAGCTTCGCCGCCGTTGGCAGCAACATCATCGCCACCGAAAATCTAAGCTCCC---CGGGGATAG------
----GTTGCGTCACCCTCGCGTATGACACCGAGACAGCGGGGCTG-------TCTATCATCCCTGATCTTCCAAAACCTT
TGCATGGTCATTGGATCCA----CGCCGCAGCGGCCGGGAACCAGTTGTACAC-----------CTTCGTGGGCAACTTG
GATGATCAGGAGGGTTGCTCCGAAGGATGCATGCATCACCTCGAAGATGTGCCTCCGCCGACGGACAGGGAGGCGTACTG
GTGCGGGAACAGAGACCACTGGTCATGGAGCAGCATCCCATCGACACTCCCTTTCAACGTGTACCAAATGTTGTCGATCG
CAGTGCATCCGGAGGGAGGAGGGCGCA---CACTGTTTGTATCGGTGGAGGGGGG-TGGAGCCTCGGACCCCTGGAGCGA
GGGCGCTGGCAATGGTGCCTTGGGCCACTTCGGTGAGGGCATCCCCTCCCGCACCTAC----TCCAACGACATCGAGAGC
GGCAAGTGGACGGGCCATTGCGAGTGGGGTCTACCCTTTTTCGGCCAAGTCCACTACAACAAGGAGCTCGACGCATGGGT
TGGGCTCCACAAGGCGCATGGAGACCCAGATGGCTACATC----TCCTCGTGCGACGTCATTTGTCCCAACGAGAGCCCC
GCGCGCGCAGCCGGCCTGGAATTTATGCATGGAGAGGTTGTTCGATCCTCATGCGGAGGCCATGAGGCTATACAGGGATA
GGCACGTCCCAGCTAGTCTTGTGTACATGGGTGACAG----TACCTATTGTCTCGTCGAGGTTGTGCCGCAAGAAAGATT
TAAGCGGAGGCGATGCACCAGCACCGGTAGCAAGTGCATGATCCGTTTGTCGATGTTTCAACTCAAGTACAGCAAAAACG
GCAAGCTCAGAACCACCGTGCAGAGGCCTAACCGCTCCTACCACTTTCCCAAATATAATGAGAATTTTCAGGTGCAGGCA
TTCTGGATGTGATGGAGGTTGTATGGCACCACGTGTTGGATGCATCAGGGCGCATGGTTAAAATTA--------------
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>chr1D_199
C------ACTCC--------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------ATGCTCCGTTCCGAGCCCATTATA----ATCCAT
ACACGTCGGCTTCCAATCA----AAGGCCCAAAAGCAACAGAGTGGTCCTTGATCCGTAACGCAGCATTCGCAGTTTCGC
ACCGGAGAACAGAAACGCATTGCAA-------------------------------------------------------
-----CAACCCTAGCAGCTCCTAGCAACGTC--CATCCCTAAAAAAAAAAAGCTCCTA--GCAACG--TCCAAGATGCTG
CGATCTTTCCTTGCTCTC------------------CTCTCCCGTCGCCACGAGCGCCG---------CCG---------
TCTCGGCCGCAGCGCGGATACGATC------------CCGTCCCCGTCCCGGAGCTACAGGTCGTCTT------AGACGA
CGGCCACCGATGCCGATCGCG---CGTCGATCGGCCAAACCAGTGGCAGCTGCCTCTGCTAACCGCCACGGCCGCACATC
ACCCAACCACAGGCAGCAGCATCTGTACCTAGT-------GCTCGATGACTGGAAAAAGGGCTTCAGCATCCACAAGCTG
GACCTGG---ACGGTGACGGATCGGACGGCGGCGACTTGACCCTGCGGCCTCCGGTCCACCGCCAATCGAGCGA-CAAAC
TAATTACTGGAGCTTCGCCGCCCTTGGCAGCAACATCATCGCCACGGGGAAACTAAGGTACTACTCGGAAAAAG------
----ATTGTGTCACCCTCGTGTACGACACGGAGACGGCGGGGCTT-------TCTATCCTCCCAGATATTCCAAAGACGC
TGCGTGCTCATTGGCTCCACATGTACGGCGGCGGCCGGGAACAAACTGTAAGCTATGCAAG-------------------
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--------------------AGCTATGCAAGGAGATGATGTTCGACCCTGATGCA---GCCATGAGGCTATATATGGATA
AGCACGTCCCGGCTAGTCTTGTGTACATGGGTGACAG----TAGATACTGTCTCGTCGAGGTCGTGCCGCAAGAAAGATT
CAACGGGAGGCACTGCACTAGCACTGGCAGCAAGTGCATGATCCTTTTGTCCACATTCCGACTCAAGTACGGCAAGAACG
GCGGGCTCAGAACCATTGCCCACAAGCCTAACCGCTCCTTCCTCTTTTCCAAATATAATGAGGATTTTCAGGTGCGGGCA
TTCTGGATGTGATGGAGGTTGTATGGTACTACGTGCTGGAAGCAATATCGGCCCAC------------------------
---ATGGCTACAATATTTACGAGGTTGTTTGGCCGGTGCTTTTTAAATGCTTAAATTTCCAAATCATTATGTATGTTCTA
GCTATAC-----------------------ACTTAAAGTTGGACTACACAAATTTGTGGTGTCTCAAAAGCTGTCAAACT
TGTATGATTTGTTTCGATTTTTGATAAATTGTTAA--TTGCAATTAACAAA-ACTAGAAGTGTAAGTGCGCTTCACTGCA
CTGCTTACACTGTGACCG-TTTGTCTAGTGTGCTTGCATGCCCCCCTCCATTGCGGGAATTTTTGGTTGC----------
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---------------------------------------------------------------------GGTGCACGAGC
AAAGCGCTGGGTTTCAT--TCTCTATTTTGGGTGGTTCGTAAAAGTGAGCTTCATTGTGTAAATATGGCATGTGT-----
---TGAGTCCGACGCATTTTTGAGGTGGA---------------------------------------------------
----------GGTCGTGGCAGAACAACATTAATCTACAAAACAGAAAAGATAAC----------AAAATCTAGACAATAC
AGGTTGTAAAAAGGTGATCTTTCATGACATGAGAACCCAATGTTGATTCAAATTCAGTACATGCACCCCAAACAATTATC
GTTCTTCCTTGTGATAGTCGATTGCTCCATGAGTCCAAGACTTCTTGGAACCAGAATGATTAGCTGAACTATTGTACACG
GAGAAGGGAATGAAACACCGATAGCAATGCTCAATAGGAGCATTTTATCCTAC----AGC----CAATACTTTGACATTG
TACTAACTTTGTGGGTCAAGATTGATCACATATTTGGCAATATCCAATAAACACACCTATGTGAGCCATTTCAGCTGCCC
ATGACAATTAACCAATATGACAAGAAGCAAACGGAAATAATTTGGAATGTAGAGTATCCTTTAATAGTTAAGGTTCATGG
TAATCCA------
>chr1B_237
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-CACGTCGGCTTCCACTCA----AAGGCCCAAAAGCAACAGAGTGGTCCTTGATCCGTAACGCAATATTCGCAGTTTCGC
ACCGGAGAACAGAA-CGCATTGCAAGTTTGCAACA---------------------------------------------
------AACCCTAGCAGCTCCTAGCAACGTC--CCCCGCGT---------------TA--GCACCG--GCCACGATGCTG
CGATCTTTCCTTGCTCTCCGCCACCCTCGCACTCTCCTCTCCCGTCGCCACGAGCGCCG---------CCG---------
TCTCGGCCGCAGCGCGGATGCGATC------------CCGTCCCCATCCCGGAGCTACATGTCGTCGGAGTACGAGACGA
CGGCCACCGAAGCCGATTGCG---CGG----CGGCCAAACCATTACCACCTGCCTCTGCTAACCGCCATGGCCGCACATC
ACCCAACCACAGGCGGCAGCATCTGTACCTGGT-------TCTCGGCGACCGGAAGAAGGGCTTCAGCATCCACAAGCTG
GAC------------------------GGCGGCGACTTGGCCATGCGGCCTCCGGTCCACGGCCAATCGAGCGAACAAAC
TAATTACTGGAGCTTCGCTGCCCTTGGCAGCAACATCATCGCCACGGGAAAACTAAGGTACTACTCGGAAAAAG------
----ATTGTGTCACCCTCGTGTATGACACCGAGACGTCGGGGCTT-------TCTATCCTCCCTGATATTCCAAAGACGC
TGCGTGCACATTGGCTCCA----TACGGCGGCAGCCGGGAACAAGCTGTACAC-----------CTCCACGGGCAACTTG
GACGGTAATGAGAGCTACTACAAAGGATGCATGAATCGCCTCGAAGATGCGCCTCCACCGACGGACACGGCGGCGCACCG
GTGGGGGAACATCGACCACTGGTCTTGGAGCAGCATACCATGGACACTCCCTCTCGACGTGTTTCAAATGCAGTCGATCG
CAGTGCACCCGGCGGAAAGAGGGCACA---CACTGTTTGTATCGATTGAGGGGGG-TCGAGACTCAGACCCCTGGGGCGA
GGGG------GATGGTGACTCGGACCCCTTGGGCCAGGGCAGCCCCTCCCGCACCTAC----TCCTATGACATCGAGAGC
GGCAAGTGGAGGGGCCATGGCAAGTGGGGTCTACCCTTTTTTGGCCAAGTCCACTTCGACAAGGAGCTCGACGCGTGGGT
TGGGCTACACAGGGCACATGAATACCCAGATGGCTACATC----TGGTCCTGCGACGTCATCTCTCCCACTGAGAGCCAC
ACA----AAGCCGGCCTGGAAGCTATGCAAGGAGATGATGTTCGACCCTGATGCA---GCCATGAGGCTATATATGGATA
GGCACATCCCGG-TAGTCTTGTGTACATGGGTGACAG----TAGCTACTGTCTCGTCGAGGTCTTGCCGCAAGAAAGATT
CAACGGGAGGCACTGCACTAGCAGTGGCAGCAAGTG-ATGATCCGTTTGTCCACATTCCGACTCAAGTACGGCAAGAACG
GCGAGCTCAGAACCATTGCCCACAAGCCTAACCGCTCCTTCCTCTTTTCCAAATATAATGAGGATTTTCAGGTGTGGGCA
TT------------------------------------------------------------------------------
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>chr1A_385
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-------------------------------ACCCCGGCGCTAAT---CTGCCCGCGCGCGCACCG--GCCGCGATGCTG
CGATCTTTCCTTGCTCCCCGTCACCCTCGCACCCTCCTCTCCCGTCGCCACGAGCGCCG---------CCG---------
TCTCGGCCGCAGCGCGGATGCGATC------------CCGTCCC------GGAGCTACATCTCGTCGGAGGACGAGACGA
CGGCCACCGATGCTGATCGCG---CGG----CGGCCAAACCAGTGGCAGCTACCTCTGCTAACCGCCACGGCAGCACATC
GCCCAAGCACAGGCGGCAGCATCTGTACCTGAT-------TCTTGACGACTGGAAGAAGGGCTTCAGCATCCACAAGCTG
GACCTGCTAGGC---GACGGATCGGACGGCGGCGATTTGGCCCTGCGGCCTCCGGTCCACCGCCAATCGAGCGAACAAAT
TAATTACTGGAGCTTCGCCGCCCTTGGCAGCAACATCATCGCCACGGGGAAACTAAGGTACTACCGGGAAAAAG------
----ATTGTGTCACCCTCGTGTACGACACGGAGACGGCGGGGCTT-------TCTATCCTCCCTGATATTCCAAAGACGC
TGCGTGCTCATTGGCTCCA----CACGGCGGCGGCCGGAAACAAGCTGTACAC-----------CTTCGCGGGCAACTTG
GATGGTAATGAGAGCTACTACAAAGGATGCATGCATCGCCTCGAAGATGCGCCTCCGCCGATGGACACGGCGGCGTACCG
GTGGGGGAACAACGACCATTGGTCTTGGAGCAGCATACCATGGACACTCCCTTTTGACGTGTTCCAAGTGCAGTCGATCG
CAGTGCACCCGGCGGAAAGAGGGCACA---CACAGTTTGTATCAGTTGAGGGGGG-TCAAGACTCGGACCCCTTGGGCCA
GGACAA--------------------------------------------------------------------------
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>chr1A_416
--------------------------------------------------------------------------------
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-----------------------------------------------------------------GCCGGCGCGATGCTG
CGAACGTTCCTCGCTGGCTGTCACCCTCGCCCTCTCGGCTCCCGTCGCCATGAATGCTGCGCCATCGCCCG---------
GCTCGGCCGCCGCGTGGATGCGATCCCGTCCCCGTCCCCGTCCC------GGAGCTACACGTCGTCGGAGGACGAGACGA
CGGACACCGAAGCCGATCACG---CGG----AGGCCAAACCAGTGGCACCTGCCTCCGCGAACAGCTACGGCCGCGCATC
ACCCAACCACAGGCGGCAGCATCTGTACCTGGTGGCTGGTGCTCGACGACTGGAAGAAGGGCTTCAGCATCCACAAGCTG
GACCTGCCG---------------------GGCGACTTGGCCATGCGGCCTCCGGTCCACCGCCAATCAAGCGAAAAAAA
TGATTACTGGAGCTTCGCCGCCCTTGGTAGAAGCATCGTCGCCATGGGAAC-CTATGCTCCT---CGGTCGGGCTCGCGG
GAACATTGCGTCACCCTCGCATATGACACCGAGACGGCAGGGCTGTCCATCCTCCATCGTCCATGATGTTCCGAAAACAA
TGTCCGGTCCCTGGTTCCA----TGCGGCTGCTGCCGGGGACAAGCTGTAACTTTTGAAGTCAACTGCACGGGTAATTGG
AATGGTAATGAGGGCTGCTACAAAGGATGCGTGCATGGCCTCGAAGATTTGCCTCCGCCAACGGACATCGAGGCCTACTC
ATGGGGGAAC--------------TTGGAGCAGCATACCATCAAATCTCGCTTTCAACGTATTCCAAATGCAGTCCATCA
CAGTGCACCCAGAGGGAGGAGGGCGCATCTCGTTGTTTGTATCGGTGGAGGGGGGGTGGAGACTCGGACACCTTGGGCGA
GGAGGATGGCGAGGA------GGGCCCCTTGGTCCAGGACAACCTCTCCCGCATCTACTCCTTCCTATGACATCGAGAGC
GGCAAGTGGAGGGGCCATGGCAAGTGGGGTCTACCTTTTTTTGGCCAAGTCCTGTACAACAAGGAGCTTGATGCGTGGGT
TGGGCTTCACAGGGTGCATGGATACCCAGATGGCTACATCTGCTTGCTCCTGCGACGTCATCTCTCCCACAGAGAGACAC
GCA----CAACCGGCCTGGAAGCTATGCGCGAAGATGTTGTTCGATCCTCATGCA---GCCCCGAGGCTATATACAGATA
GGCACATTCCGGCAAGTCTTGTGTACATGGGTGACAGACAGTATCTACTGCCTCGTCGAGGTCGTGACACAAGAAAGATT
TAAGAGGAGGCGCCGCACTAGCACTGGAAGCAAGTGCATGATCCGCTTGTC-----------------------------
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>chr1D_998
--------------------------------------------------------------------------------
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---GATAATGAGGGCTGCTACAACGGATGCATGCATCGCCTAGAAGATTTACCTCCGCCAACGGACATCGAGGCATACTG
GTGGGGGAACAGAGACCACTGGTCTTGGAGTAACATACCATCAACACTGCCTTTCAACGTGTTCCAAATGCAGTCCATCA
CATTGCACCCAGAGGGAGGAGGGCGCA---CGTTGTTTGTATCGGTGGAGGGGGG-TGGAGACTCGGACACCTTGG-CGA
GGAGGATGGCGAGGA------GGACTCTTTAGTGCAGGACAACCCCTCCCGGATCTAC----TCCTATGACATCGAGAGC
GGCAAGTGGAGGGGCCACGGCAAGTGGGGTCTACCCTTTTTTGGTCAAGTCCTGTACAACAAGGAGCTTGATGCGTGGGT
TGGGCTCCACAAGGTGCATGGATGCCCAGATGGCTACATC----TGCTCCTGCGACGTCATCTCTCCCA--GAGAGCCAC
ACA----CAACCGGCCTCGAAGGTATGCGCAAAAATGTTGTTCGATCCTCATGCG---GCCCCGAGGCTATATACGGATA
GGCGCATTCCGGCTAGTCTTGTGTACATGGGTGACAG----TATCTACTGCCTCGTCGAGGTCGTGCCGCAAGAAAGATT
TAAGAGGAG---CCGCACTTGCACTGGCAGAAAGTGTATGGTTCAGTTGTCCACGTTCCGCCTCAAGTATGGCAAGAACG
GTGAGCTCATAACCACCGCACATGGACCTAATCGCTCCTACCTCTTCTCCAAATACGATGAGCATTTTCAGGTGCAGGCA
TTCTGGATGTGACGGAGG--GTATGGTAGATGCAT-------CAG---GACGCATGGTTAAAATTAAGTTGAATCCCCTG
CAGATTGCTATAATATTTACAAGGCTGTTTGGTCGATGCTTGTGAAATGTTTAAATTTCCGGAGCATTACATATGCTCTA
GCTAGACACCCTTTAAGTTGGA----------------------------------------------------------
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>chr1A_1829
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---------------------------------------------------------TTAAAATTAATTTGAATCTCCTG
TGAATTGCTACAATATTTATGAGGTTGTCTGGAGGGTGCTTGTTAAATGCTTAATTTTCCAGATCATTACATATGTTCTA
GCTAGACACACTTTAAGCTGGACTATACGTACTTTAAGTTGGACTACATGAATTTCTGGTGTCTGGGAAAAAGTGAAACT
TGTATGATCTGTTTCAATGTTTTGAGAAATAATTATGTTGCAATTAACAAACACAATTGGCGTAAATGCAC----CTGCG
TCGCTTAGGTTGTAACTGTTTTGTCTAGTGTGCTTCCATGCCCCCCT---------GAATTTTCGGTTGT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GGTGCATGAGT
AAAGCGCCGGATTTCGACCTCTCTATTTTGGGTGATTTCTAAAATTGAGCTTTGTTGTGCAAATATGGCATGCGACCATG
CGCTGAGTCCAATGCATTTT-GAGGTGGAGGCCATCTTCACTTTT---TGGAGAATCGGATCTCCAAATCTAGATGAATA
ATTGTGAGTTGGTCGTGGCATCACAACATTAAACTATAAAGCAGAAAAGATAGCTAATAAAAAGAAAATTTAGACAATAC
AAGTTGTGAAGAGGCGATCTCTCGTGATATGAAAACCCAGTGTTGATTCAACTTCAGCACATGCACCACAAACAATTATG
GTTCCTCCACATGACAATTGATTGCTCCATGATTCCAAGACTTTTTGGAACCAGAATGATTTGCTGAACTTTTGTAGACC
AAGAAGTGAATAAAACACCGATAGCAATGCTAAATAGGAGAATTTTATCCTACCGCGCGC----CAATACTTTGGCATTG
TACTAAC-------------------------------AATATCCAGTAAACACACCTATGTGAGCCAGTTTAGCTGCCC
ATCACAATTACCTAATCTAGCAAGAAACAAATGAAAATAATTTAGAGTGTAGAGTATCCTTTAATAATTAAGGTTCATGG
TAACCCAGCAATG
>SNPs
---SSS--S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
----------------------------SSS--------S------S----------S----S----------SSS----
--------------------------------------SSSSSSSS---S------------------------------
------S------------------------------------SS-----------------S-----------------
--------------------------------------------------------SS--SSSSSSSSSSSSSSSSSSSS
SSSSS---------------------------------------------------------------------------
--------------SS------------------------------S-----------S------------SSSSSSSSS
-------------------------------------------S------------------------------------
------------------------------------------------------------------------S--S--S-
-------S----------S-------------------------------------------------------------
-------SS-------------------S---------------------------------------------------
---------------------------------------------------------S-------------S--------
---------------------------------S-S--------------------------------------------
--------------------------------------------------------------------------S-----
-------S------------------------------------------------------------------------
---------------------------------------------------------S----------------------
----------------------------------------------------------------------------S---
-----------------------------------------S--------------------------------------
---------------S----------------------------------------------------------------
-------------------------SS------S---------------S------S-----------------------
------------------------S-----------------S---------S---------------------------
S--------------------S----------------------------------------------------------
--------------S-S-------------------------------------------S-------------------
-------------------------------------S------------------------------------------
--------------------------------------S------------S----------------------------
----------------S---------------------------------------------------------------
-------------------------------------------------------------S------------------
-----S--------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
---------------------------------------------SSS------------------S-------------
-------------------------S-----------------S----------------------------S-------
-S---------------------------------------------------SS---------S---------------
-----------------------S-------------S----------------------------S-------------
--------------------------------------------------S---------SSSS----------------
------S-------------------------S----S------------------------------------------
----------------------------------S---------------------------------------------
-------------
>forward_39
-------------------CGCTGCGTAGTGAGATGAGT-----------------------------------------
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>reverse_1128
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-------TGGAGGGTTGCTACGAAGGA-----------------------------------------------------
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>forward_47
---------------------------AGTGAGATGAGTTCGCCAGC---------------------------------
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>reverse_1625
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------------------------CTGCACGGAGAGGTTGTTTG------------------------------------
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>forward_402
--------------------------------------------------------------------------------
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--------------------------------------------------------------TCGGCCGGAAAAATCGAT
CT------------------------------------------------------------------------------
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>reverse_1821
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------------------------------------------------------------GCTCAAGTACGGCAAAAACG
G-------------------------------------------------------------------------------
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>forward_1402
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----------------------GACGTCTTCGGTGAGGACAC--------------------------------------
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>reverse_2854
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-----------------------------------------------------AAAGCACATGCCCCACAAAC-------
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-------------
