>input_sequence_68893
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----ATGGGATGCTGCGGCAGCGTGAGTAGTTTTTACTCACATACATCTCATTTACAACTGGCAACTTTGATAACTGAAT
CGTGCACTAGCATCTGTATTGT----------------------------------------------------------
-------------AAGGAAGCCGTTTATCGAGTTATACATTAGTAAATCGAGTTCTTTGGTTATGCTTCCCTTTGCAGAA
CCCTGTAGATGAGGAGGAACACCTAGACTACAGCTCTGGGAATGTGACTCTTATAACTGATCTAAAGAGTTGGGAGAAGA
AATTGGAAGATGCAACTGACGCCAATAAAACAGTAAGTAGCCTACAACCTAACTCATACTCTGGACACAAGGATATATAG
GTGCATGCAA-TTTCCAATTTCGAATCCCTTCAACTGTATTGATTAACCACGTTGGCATTTTTCAACTGCACAGCTTGTT
GTAAAATTCAGCGCAGTATGGTGTGGCCCGTGTAGGATCGCTGCTCCTGCATACTCCGAACTCTCTTTGAAGCATTCCGA
TCTTGTTTTCGTGTCCGTGGACGTAGACGAACTACCGGTACACAAATGTTCCGCCAATTCATTGCTACTTTACCTTTGAG
CGAATGCCCAAACTAAATGTCATTTCGATATATGC----TTTTTGTCAGGAACTGGTCACGCAATTCGACGTACGTGCCA
CGCCGACATTCATCTTCTTGAGAGATAACAAGGAGATCGACAAGCTGGTGGGGGGGAACCAGGTCGATCTTCAGCAGAAG
TTCGAACCATACTGCCGGCCAGGCGACGAAGTCATGAGTAAACAGTCTTTCGAGGACAAAACCTGA--------------
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>chr1A_1_TraesCS1A01G301500
GTTCCGCCCCGGCGCCACCCGCCTCTCTCCGAGCCCCCGCCGCCCGCCGGGGTGGGCTTGCCGTGGACGACGGCCGGCAG
GCATCCAACGCGGGGAAATCTCAATCTTCGGTTGGATCCCCCATCGTCAGGAGGCGGA---ACGTAGGCTTCTTGGTCCT
GC-CAAGGTATGCATGGATTGATGGATATGTGC----------ATTTCATTCTGCTCTCAGCAATGTA-----GTAATAA
GCAGGCTGCATGCATGGCTGCCGAAAGCTATTTGCCGGTTCCATATCATGGCATTTCTTTTTAATCTACAATATACATCT
AAGCAATGTGGTAACCGTATG-TTTTTTCTAGGATTAGTAGGTCAACAAAAGTTCATTTCTTTGGCGTTCAAACGGTCAT
ATTGTTGTTGGAGGTCTCCTCCAATTTAATGAATGTATCTCCTTTGGATG-AAAAAATTGACACCCTAGGATTGTCTGAA
GCTGTAGCACGCGGATTCAGGCAAATATGTTGAGCAAAATTCGCTATCGTCGAAACAAACTTCTCAGTTCTATTGGATTT
GCTGTGGTTGTGACTTGCGGACATCAAATCTGTTTCAA--TTTCTATCTAAAACAAACAGCACGTTTTTAGCTGGTCTCT
TCTTGTTCATATTTCTGCAGTCTCTGGCCATTGTTTGGAAGAATTGAAGTGCCATTCACCATTTGTATGTACACCCTCTG
TTCCTAAATATAAGAAGTTTTGACACTTCAATTTAAACTGTCAAAACGTCTTATATTCAAGAACAGAGGTACTCCCTTAG
TGATCTAAACTCTCTTAT-----ATTTCTTTACAGAGGTAGTAGTACATATTTATATTCACCATTTCGCCATCTAGAGCT
AGCTATGTTAATCATATTTGATATATTTGGTATCATGTTAT--------------CTTTTATTCAGTCAAATAGTGAAAT
CAGCACTGAAAATAT--ACCTCTTTTTCCTCCTCGTGTACCAGAGTCCAGGAGTCCGGACATCCTGACGGATTTGCTCGA
ACCAATGGGATGCTGCGGCAGCGTGAGTAGTTTTTACTCACATACATCTCATTTACAACTGGCAACTTTGATAACTGAAT
CGTGCACTAGCATCTGTATTGT----------------------------------------------------------
-------------AAGGAAGCCGTTTATCGAGTTATACATTAGTAAATCGAGTTCTTTGGTTATGCTTCCCTTTGCAGAA
CCCTGTAGATGAGGAGGAACACCTAGACTACAGCTCTGGGAATGTGACTCTTATAACTGATCTAAAGAGTTGGGAGAAGA
AATTGGAAGATGCAACTGACGCCAATAAAACAGTAAGTAGCCTACAACCTAACTCATACTCTGGACACAAGGATATATAG
GTGCATGCAA-TTTCCAATTTCGAATCCCTTCAACTGTATTGATTAACCACGTTGGCATTTTTCAACTGCACAGCTTGTT
GTAAAATTCAGCGCAGTATGGTGTGGCCCGTGTAGGATCGCTGCTCCTGCATACTCCGAACTCTCTTTGAAGCATTCCGA
TCTTGTTTTCGTGTCCGTGGACGTAGACGAACTACCGGTACACAAATGTTCCGCCAATTCATTGCTACTTTACCTTTGAG
CGAATGCCCAAACTAAATGTCATTTCGATATATGC----TTTTTGTCAGGAACTGGTCACGCAATTCGACGTACGTGCCA
CGCCGACATTCATCTTCTTGAGAGATAACAAGGAGATCGACAAGCTGGTGGGGGGGAACCAGGTCGATCTTCAGCAGAAG
TTCGAACCATACTGCCGGCCAGGCGACGAAGTCATGAGTAAACAGTCTTTCGAGGACAAAACCTGATGTTCCTGCCTGCC
AGTCGATAGAGCTTCAGGACGAGCACGGCCTCCATTGGCTGGGAGCATCAGCAAGGGCCTGCTCGGCGGCATACGTAGGT
TCGAGAAACTGACCAGCAGAAGTAGGATTTCTTGGTAGCGTCCACACTCGATCAGCAGTAAATTAAGTTAGCCCAGCATC
TGTAACTTTGCGCCACACACGCTGTCCATATGAACTCGCACAAAAACGATGTACTGATTGATTGATACCAGCCAGATGCC
TTGAGATCTCATGAAATCATGACTGTACAACAAAATTGCCAATGCCATTGGTGATCTTGCGTCTCACTCATGTCAGGACT
CAGGACAGAATTTAT--------CATCTATATAGAAACTATATGCAGGGGTTTGGTCGCTTGTTCAATGAAGCCAGACGT
ATCAAT---TATTTGGTGAGCTGCAGCTTTGACAGGACGGCGGCGGCCCGATCACCGCCGAGCAGGAAATAGGGGTGCCG
GAGCGCGGCGGCGGCGGAGAGGCGTCCCTTCTCCCGCTGCGCGATGAGCTTGGTGGCCAGGTCCCAGCCCCTGCCGGAGT
CGAGGTCCAGGATCTGCAGGTCGGGTCTCCGGCGCGTGGTCTCCCGCCACCTGTTGAGGTCGTAGCCGGCGGCCTTGAGC
TCGGAGTTGAAGTTCTTGAGGCCGGAGGGGGACCTGAGGGCCGGCGTGGCCATCTGCATGAGCACGATCCCGGCCGAGTA
CATGTCGAAGAGGTCGGGGCTGTTGAGCTGCCAGAGGATCGGGGAGAGGATGGCGGCGATGGGCTCGGCGGGCGGCGTGG
GGGTCTCCTCGGGGAGCACGTAGAGCTCGGGCGGGCAGTAGTCCGGGTCGAGCAGGGTGCGGTCGGGCAAGTAGTTCTTG
CCGATGCGCAGGTCGGTGGCGGCGCCGAAGTCGATGAGCTTGACCTGGCCCCGGCGGGTGACGACGAGGTTGGAGGGCTT
GATGTCGCGGTGGACGATGCCGGTGTCGTGGATGCGG
>chr1B_1
GTTCCGCCCCGGCGCCACCCGCCTCTCTCCGAGCCCCCGCCGCCCGCCGGGGTGGGCTTGCCGTGGACGACGGCCGGCAG
GCGTCCAACGCGGGGAAATCTGAATCTTCTGTTGGATCCCCCATCATCATCAGGAGGA---ACATAGGCTTCCTGGTCCT
GCACAAGGTATGT--------ATCTATGTGCATCTTCTTTCCAATTTCTTTCTGCTCTCAACAATGTAA-----------
CCAGGCTGCA----------------------TGCCGGCTCCATATCATAGCATTCAG-A--AATTTACGATATACATCT
AAGCAATGTGGTAATCGTATGCTTTTTTCTAGGATTATTAGGTCAAGAAAAGTTCATTTCCTTGGCGTTCAAACGGTCAT
ATTGTTGTTGGAGGTCTCCTCCAATTTAATGAATGCATCTCCTTTGGACAAAAAAAATTGACACCCTAGGATCGTCTGAA
ACTGTTGCATGCGGATTCAGGCAAATATGTTGAGCAAGATTCGCTATCGTGCAGACAAACCTCTCGGCTCTATTGGATTT
GCCGTGGTTGTGACTTGCGGACATCAAATCTCTTTCAA--TTTCTATCTAAAACAAACAGCACGTTTTTGTCTGGTCTCT
TCTTGTTCATATTTCTGCAGTCTCTGGCCATTGTTTTGAAGAATTGAAGTGCTATTCACCATTTGTATGTACACCCTCTG
TTCCTAAATATAGGAAGTTTTGGCACTTAAATTTAAACTGTCAAAACATCTTATATTTAAGAACAGAGGTACTCCCTTAG
TGATCTAAACTCTCTTATACTGTATTTCTTTACAGAGGGAGTAGTACATATTTATATTCACCATTTCGCCATCTAGAGCT
AGCTATGTTAATCATATTTGATATA-TTGGTATCATGCTATGGCATAGCGTATTGCTTTTATTCAGTCAAATAGTGAAAT
CAGCACTGAAAATATATACCTCTTTTTCCTCCTCGTCTACCAGAGTCCAGGAATCCGGACATCCTGACGGATTTGCTCGA
ACCAATGGGATGCTGCGGCAGCGTGAGTAGTTTTTACTCACATCCATCTCATTTACAACTGGCAACTTTGATAACTGAAT
CGTGCACTAGCATCTTTATTGCATAGCTTGTGTTTGCTTGCCATGCTACGTAGTGCTTTTTTTTGCTGGTCAACTGATTG
TAAGGCCC----AAAGGAAGCCGTTTATCGAGTTATACATTAGTAAATCGAGCTCTTTGGTTATGCTTCCCTTTGCAGAA
CCCTGTAGATGAGGAGGAACACCTAGATTACAGCTCTGGGAATGTGACTCTTATAACCGATCTAAAGAGTTGGGAGAAGA
AAGTGGAAGATGCAGCTGACGCCAATAAAACAGTAAGTAGCCTACAACCTAACTCATACTCTGGACACAAGGATATATGG
GTGCATGTGGCTTTCCAATTTGGAATTCCTGCAGCTGTTTTCATTAACCATGCCAACATTTTTCAACTGCGCAGCTTGTT
GTAAAATTCAGCGCAGTATGGTGTGGCCCGTGTAGGATCGCTGCTCCTACGTACGCCGAACTTTCTTTGAAGCATTCCGA
TCTTGTTTTCGTGTCTGTGGACGTGGACGAACTACCGGTACACAAATGTTCCGCCGATCCATTACTAATTTAGCTTTGAG
CGAATGCTCAAACTAAATGTCATTTCGATACATG---TTTTTTTGTCAGGAACTGGTCACGCAATTCGACGTACGTGCCA
CGCCGACATTCATCTTCTTGAGAGATAAGGAGGAGATCGACAAGCTGGTGGGGGGGAACCAGGCCGATCTTCAGCAGAAG
TTCGAACCATACTGCCGGCCAGGTGACGACGTCATGAGTAAACAGTCTTTCGAGGACAAAACCTGATGTTCCTGCCTGGC
AGTCAATAGAGCTTCAGTATGAGCACGGCCTCCATTGTCTGGGAGCATCAGCAAGAGCCTGCTCGGCGGCATACGTAGGT
TCGAGAAACTGACCAGCAGAAGTAGGATTTCTTGGTAGCGTCCACACTCGATCAGCAGTAAATTAAGTTAGCCCAGCATC
TGTAACTTTGCACCACACACGCTGTCCATATGAACTCGCACAAAAACAATGTACTGATTGATTGACACCAGCCAGATGCC
TTGAGATCTCATG-AATCATGACTGTACAACAAAATTGCCAATGCCATTGGTGATCTTGCGTCTCACTCATGTCAGGACT
CAGGACAGAATTTATGGGATGGAGATCTATATAGAAACTATATGCAGGGGTTTGATCGCTCGTTCAAAGAAGACAGACAT
ATCAAT---TATTTGGTGAGCTGCAGCTTTGACAGGACGGCGGCGGCCCGATCTCCACCGAGCAGGAAATAGGGGTGCCG
GAGCGCGGCGGCGGCGGAGAGCCGTCCCTTCTCCCGCTGCGAGATGAGCTTGGTGGCCAGGTCCCAGCCTCTGCCGGAGT
CGAGGTCCAGGATCTGCAGGTCGGGTCTGCGGCGCGTGGTCTCCCGCCACCTGTTGAGGTCGTAGCCGGCGGCCTTGAGC
TCGGAGTTGAAGTTCTTGAGGCCCGAGGGGGACCTGAGCGCCGGCGTGGCCATCTGCATGAGCACGATCCCGGCCGAGTA
CATGTCGAAGAGGTCGGGGCTGTTGAGCTGCCAGAGGATCGGGGAGAGGATGGCGGCGATGGGCTCGGCGGGCGGCGTGG
GGGTCTCCTCGGGGAGCACGTAGAGCTCGGGCGGGCAGTAGTCCGGGTCGAGCAGGGTGCGGTCGGGCACGTAGTTCTTG
CCGATGCGGAGGTCGGTGGCGGCGCCGAAGTCGATGAGCTTGACCTGGCCCCGGCGGGTGACCACGAGGTTGGAGGGCTT
GATGTCGCGGTGGACGATGCCGGTGTCGTGGATGCGG
>chr1D_1
GTTCCGCCCCGGCGCCACCCGCCTCTCTCCGAGCCCCCGCCGCCCGCCGGGGTGGGCTTGCCGTGGACGACGGCCGGCAG
GCGTCCAACGCGGGGAAATCTGAATCTTCCGTTGGATCCCCCATCATCATCAGGAGGAGGAACATAGGCTTCTTGGTCCT
GCGCAAGGTATGC--------ATGTATATGTGC----------ATTTCGTTCTGCTCTCAACAATGTAATAGAGTAATAA
CCAGGCTGCATGCATGGCTGCCGAAAGCTATTTGCCGGTTCCATATCATGGCATTTCCTA--AATCTACAATATACATCT
AAGCGATGTGGTAATCGTATG-TTT-------------------------------TTTCCTTGGCGTTCAAACCGTCAT
ATTGTTGTTGGAGGTCTCCTCCAATTTAATGAATGCATCTCCTTTGGGCAAAAAAAATCGACACCCTAGGATCGTCTGAA
ACTGTTGCGTGCGGATTCAGGCAAATATGTTGAGCAAGATTCGCCATCGTGCAGACAAACTTCTTGGTTCTATTGGATTT
GCCGTGGCTGTGACTTGGG--CATCAAATCTGTTTCAATTTTTCTATCTAAAACAAACAGCACGTTTTTGGCTGGTCTGT
TCTTGTTCATATTTCTGCAGTCTCTGGCCATTGTTTTGAAGAATTGAAGTGCTATTCACCATTTGTATGTACACCCTCTG
TTCCTAAATATAGGAAGTTTTAGCACTTCAATTTAAACTGTCAAAACATCTTATATTTAAGAACAGAGGTACTCCCTTAG
TGATCTAAACTCTCTTATATTTCTTTAGAGTT-AGAGGGAGTAGTACATATTTATATTCACCATTTCGCCATCTAGAGCT
AGCTATGTTAATCATATTTGATGTA-TTGGTATCATGTTATGGCATAGCGTATTGCTTTTATCCAGTCAAATAGTGAAAT
CAGCACTGAAAATATAT--CTCTTTTTCCTCCTCGTCTACCAGAGTCCAGGAGTCCGGACATCCTGACGGATTTGCTCGA
ACCAATGGGATGCTGCGGCAGCGTGAGTAGTTTTTACTCACATACATCTCATTTACAACTGGCAACTTTGATAACTGAAT
CGTGCACTAGCATCTTTATTGCATAGCTTGTGTTTGTTTGCCATGCTACGTAGTGCTTTTTTTTGTTGGTCAACTGATAG
TAAGGCCCAATTAAAGGAAGCCGTTTATCGAGTTATATGTTAGTAAATCGAGCTCTTTGGTTATGCTTCCCTTTGCAGAA
CCCTGTAGATGAGGAGGAACACCTAGACTACAGCTCTGGGAATGTGACTCTTATAACCGATCTAAAGAGCTGGGAGAAGA
AAGTGGAAGATGCAACTGACGCCAATAAAACAGTAAGTAGCTTACAACCCAACTCATACTCTGGACACAAGGATACATAG
GTGCATGTGACTTTCCAATTTGGAATTCGTGCACTTGTTTTGATTAACCATGCTGACATTTTTCAACTGCACAGCTTGTT
GTAAAATTCAGCGCAGTATGGTGTGGCCCGTGTAGGATCGCTGCTCCTACGTACGCCGAACTCTCTTTGAAGCATTCCGA
TCTTGTTTTCGTGTCTGTGGACGTAGACGAACTACCGGTACACAAATGTTCCACCGGCTCATTACTAATTCAGCTTTGAG
CGAATGCTCAAACTAAATGTCATTTCGATATATGTTTTTTTTTTGTCAGGAACTGGTCACGGAATTCGAGGTACGTGCCA
CGCCGACATTCATCTTCTTGAGAGATAAGAAGGAGATCGACAAGATGGTGGGGGGGAACCAGGCCGATCTTCAGCAGAAG
TTCGAACCATACTGCCGGCCAGGTGACGAAGTTATGAGTAAACAGTCTTTCGAGGACAAAACCTGATGTTCCTGCCCGCC
AGTCAATAGAGCTTCAGAACGAGCACGGCCTCCATTGGCTGGGAGCATCAGCAAGAGCCTGCTCGGCGGCATACGTAGGT
TCGAGAAACTGACCAGCAGAAGTAGGATTTCTTGGTAGTGTCCACACTCGATCAGCAGTAAATTAAGTTAGCCCAGCATC
TGTAACTCTGCACCACACACGCTGTCCATATGAACTCGCACG-AAACAATGTACTGATTGATTGACACCAGCCAGATGCC
TTGAGATCTCATG-AATCATGACTGTACAACAAAATTGCCAATGCCATTGGTGATCTTGCGTCTCACTCATGTCAGGATT
CAGGGCAGAATTTATGGGATGGACATCTATATGGATACTATATGCAGGGGTTTGATCGCTTGTTCTATGTAGCCAGACAT
ATCAATTACTATTTGGTGAGCTGCAGCTTTGACAGGACGGCGGCGGCCCGATCTCCGCCAAGCAGGAAATAGGGGTGCCG
GAGCGCGGCGGCGGCGGAGAGCCGCCCCTTCTCCCGCTGCGCGATGAGCTTGGTGGCCAGGTCCCAGCCTCTGCCGGAGT
CGAGGTCCAGGATCTGCAGGTCGGGTCTCCGGCGCGTGGTCTCCCGCCACCTGTTGAGGTCGTAGCCGGCGGCCTTGAGC
TCGGAGTTGAAGTTCTTGAGGCCCGAGGGCGACCTGAGCGCCGGCGTGGCCATCTGCATGAGCACGATCCCGGCTGAGTA
CATGTCGAAGAGGTCGGGGCTGTTGAGCTGCCAGAGGATCGGGGAGAGGATGGCGGCGATGGGCTCGGCGGGCGGCGTGG
GGGTCTCCTCGGGGAGCACGTAGAGCTCGGGCGGGCAGTAGTCCGGGTCGAGCAGGGTGCGGTCGGGCACGTAGTTCTTG
CCAATGCGCAGGTCGGTGGCGGCGCCGAAGTCGATGAGCTTGACCTGGCCCCGGCGGGTGACCACGAGGTTGGAGGGCTT
GATGTCGCGGTGGACGATGCCGGTGTCGTGGATGCGG
>SNPs
--------------------------------------------------------------------------------
--S------------------S-------S---------------S---SS---S--------S----------------
-------------SSSSSSSS---S-----------------------S-----------S-------------------
S--------------------------------------------------------S-SSS------------------
--------------S----------------------S--------S-------------S-------------------
-----------------------------------S------------SS----------------------S-------
S----S---S---------------------------S------------SS-S-----------S--------------
--S------------------------------------------------------------------S----------
------------------------------------S---------------S---------------------------
------------S---------S------------------------S---------S----------------------
--------------------------------------S-----------------------------------------
-------------------------S------------------------------------------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
---------------S-----S----------------------------------------------------------
----------------------------------------------------S---------------------------
---------------------------------------------------------S----------------------
--S-----------------------------------------------------------------------------
-------SS------------S----S---S--S----S-----------S-S--S------------------------
------------------------------------------------S-S---S-------------------------
---------------S---------------------------------------S-------S---S----S-------
-------S--------------------------S---------------------------------------------
----------------------------S----------------------------------S----------------
-----------------------S--------------------------------------------------------
----S------------S-------------------------------------S------------------------
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-----------S-----------------------------------S-----------------S--------------
-------------S------------------------------------------------------------------
------------------------------------------------------S-----------------------S-
-----------------------------------------------------S--------------------------
---------------------S-----------------------------------------------S----------
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-----------------------S--------------S-----------------------------------------
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---------------------------------------------------------------------S----------
--------------------------------------------------------------S-----------------
-------------------------------------
>forward_175
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---------------------------------------------------------------------------GGTCC
TGCCAAGGTATGCAT-----------------------------------------------------------------
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>reverse_2092
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-----------GCCACACACGCTGTCCATAT-------------------------------------------------
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