>input_sequence_68866
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----------------------------------------------------------------ATTGCCTCCTCCGCTC
ACCCAGAGCTAGTTAAGCAGCAAGCAAGCCCGTCCAGAAGCGAAACCGAGCCACCACC----ATCTGCTTTCTGGCTCCT
G---AGCCCAGCTCTCTCCACTCCCCATCAATCTTTGCCGATCAAGCGACCATGCTGCACCATTACCACCATGGCGAAGT
GGCCAGCCTGCACTGCCTCTCGCCCCCGAACCCGCCGTTCCACACCCACTACCACCACCCCGGCATGATCGCCGCCGGCA
TGACGCCCCCTCCGCCCTTCCACTTCTCACCGGCCGCCTACGAGTATGAGGACGAGCCTATGCTGCAGGAAGCGCTGGCT
GCCATCGGCAATAACAGCCCGCCCGGCTCCGGCGGGGCTGGTG---ATGACATCCATGGCCAGGTGCTGGCTTCGGCGGC
GGAGGAGGAGCGGAGGCGGCGGAGGATGGTGTCCAACCGCGAGTCGGCGAGGCGGTCGCGCATGCGCAAGCAGCGGCAGC
TCAGCGAGCTGTGGGCGCGGGTGGCGCACCTCCGCGGCGCCAACCGCCGCCTCCTCGACGAGCTCAACCGCGCAATGAGG
AGCTGCGGCGACGTCCGCCGCGACAACGACCGGCTCAGCGCCGAGAAGGCCGAGCTGGAGGCCAGGCTCGAGCAGCTCAT
GCAGCAAGCACAACAGAGCAACAACGCCTCCTCAGAGCCATGCGAGAAAAACACCACTGTC---------GCCGCTGCTG
AATAAACCATTCTTATCTTCTCATTTTAACTACCAGGATCGTTAATTATTGCTGTAGTATACTCAAATAAG---------
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>chr5B_1_TraesCS5B01G248400
AACATCATGCCTTATGCTCCACAGCGAGAGGGATTGTGCCTAACCCTTCGCTGTCTAAATAAGCCCTAAAATGCTGTCGC
GTCCCTCCTGAATATACCTAAGGTATATGGCAAATCCGATCAAGATCTAGCTTTAATTTTCCTTTCGGAAATCAGATGCA
GGAGATAGTAATATACCAAACCACCATGCATGCATCCTTCCTCGTAGGC----------------TCGACACCATGCTAG
TGATCCAAAGCTGGGTTTACTAATCAAAGGACCTGGGATTCCCGAACAAACTCATAGGTGTCGAGCTTGCAAGGCCCGAA
ACATTGTATAACGCTAATCTAATGGCCGAGCACGAGTTGATCTACTTCACTGGCTCTCTAGTGGCCTAACTATTTCTGTT
GGTTTATTCCCACAGTGGCTACATGTCCTGGTGTCCATCATCATCCATCAGGCAGATGTCCTGTCCCTGTGGTGGATCTC
ATGCCACTCTAACTGGGCGCAAGAGTTTAATTCTGTCCCTAAGCTAAACTAATGCGGGTGACGAGAAAAGCTAGAGGTCG
ACCGGGCATCTAGTTGGGCCACTGATTGATGAAAGAAAAATTAAAGCAGGGTTTGGCATGGATTAACTGGAATAATTAAA
AATGATAATCACGGTAGACAAGACTACTCGGGCAAGTCAAGTCATGGAATGTGCGAGCGAAGAGGGGAGAAAATAAATTA
ACCCGCAATGTCAAGACTACTCTTGGGAAAGCAAAGGTTAACTGATGGAGGATTAGTTTATGGCGGGCATAGCATTGTTT
TGGATATAGTTGGCCCCCGAAAGGAGAAAGGTGGTGGTGGTGTGTGTGTGTGCGCCTCATGGCCTTGTACCAAATCGACA
AGACGAAAGCCGCGAAACTCTAGAAAAAACAATGGACAGAGAGAGAAGATGGCTTCTCCCTCTGGACTGAGGCAGCTATA
GCG--------GAGCCGCCTTGGCTGCCAGGCTATAAAAGGAAGGCCCTCGCACCAACCCGGCCATTGCCTCCTCCGCTC
ACCCAGAGCTAGTTAAGCAGCAAGCAAGCCCGTCCAGAAGCGAAACCGAGCCACCACC----ATCTGCTTTCTGGCTCCT
G---AGCCCAGCTCTCTCCACTCCCCATCAATCTTTGCCGATCAAGCGACCATGCTGCACCATTACCACCATGGCGAAGT
GGCCAGCCTGCACTGCCTCTCGCCCCCGAACCCGCCGTTCCACACCCACTACCACCACCCCGGCATGATCGCCGCCGGCA
TGACGCCCCCTCCGCCCTTCCACTTCTCACCGGCCGCCTACGAGTATGAGGACGAGCCTATGCTGCAGGAAGCGCTGGCT
GCCATCGGCAATAACAGCCCGCCCGGCTCCGGCGGGGCTGGTG---ATGACATCCATGGCCAGGTGCTGGCTTCGGCGGC
GGAGGAGGAGCGGAGGCGGCGGAGGATGGTGTCCAACCGCGAGTCGGCGAGGCGGTCGCGCATGCGCAAGCAGCGGCAGC
TCAGCGAGCTGTGGGCGCGGGTGGCGCACCTCCGCGGCGCCAACCGCCGCCTCCTCGACGAGCTCAACCGCGCAATGAGG
AGCTGCGGCGACGTCCGCCGCGACAACGACCGGCTCAGCGCCGAGAAGGCCGAGCTGGAGGCCAGGCTCGAGCAGCTCAT
GCAGCAAGCACAACAGAGCAACAACGCCTCCTCAGAGCCATGCGAGAAAAACACCACTGTC---------GCCGCTGCTG
AATAAACCATTCTTATCTTCTCATTTTAACTACCAGGATCGTTAATTATTGCTGTAGTATACTCAAATAAGGCGTGCGTT
GAGGGGTTTGATCGGCTTAATCGTTTCTTAATTTTATTAAGACTGGGGTAATAATACATACCCTTAGCTACGTACTACTA
CTGCCCATTACTGTCATCTTTTTTGGCAAGGTGCAAGTGGCTAGATGAATATGGATTGGGTGTTACTGACGAGTTGCCAT
CAGTGGACAAATTATAGTGCAACATGATCATACGGATGATGAAACAAGAAACCGCTCGAAACCAGTGTGGATTGAGAAAC
CATACAATCTCTACTCCTAATGGACGAATTGGTTGAATAGTCCCCCCACTTTCAATCGGTTTATTTTCAACCGGTTTATT
TTCAACTGGTTTTTCTTCGTCCCACCTCTCACCAGCCCCTCCCACCGGTTTTTCTCTTTTCTCGTCTGACCGGCAATACG
CAACGTATTTATGGTAATCAATCATAATTAATCCACGTATCTCTACTCCTAATGGACGAATTGGTTGAATAGTCCCCCCC
-ACTTTCAACCGGTTTATTTTCAACT---------------GGTTTTTCTTCGTCCCACCTCCCACCAGCCCCTCCCACC
GGTTTTTCTCTTTTCTCGTCTGACCGGCAATACGCAACGTATTTATGGTAATCAATCATAATTAATCCACGTATAGTAAT
AAATCAATCCAGGTATGGTAAGGTCATAATCTCTACTCCTAATGGACGAATTGGTTGAATAGTCCCCC--ACTTTCAACC
GGTTTATTTTCAACCGGTTT---------------TTCTTCGTCCCACCTCCCACCAGCCCCTCCCACCGGTTTTTCTCT
TTTCTCGTCTGACCGGCAATACCCAACGTATTTATGGTAATCAATCATAATTAATCCATGTATAGTAATAAATCAATCCA
GGTATGGTAAGGTCATAACTCAGGAAATTTTGA-----------ATATGGTAATAAATTTAAATTACCCCAAAGGCTATC
AATCCAGGTATGGTAAGGCCATAACTCGGGAAATATCGAATATGGTAATAAATTTAAATTACCATCAGGTATGGT
>chr5D_3
--CATCATGCCTTATGCTCCAGAGCGAGAGGGATTGTGCCTAACCCTTCCCTGTCGAAATAAGCCCTAAAATGCCGTCGC
GTCCCTCCTGAATATACCCAAGGTATATGGCAAATCCGATCAAGATCTAGCTTTAATTTTTCTTTCGGAAATCAGATGCA
GGAGATAATAATATACCAAACCACCATGCATG----------------C----------------TCGACACCATGCTAG
TGATCCAAAGTTGGGTTTACTAATCAAAGGACCTGGGATTCCCGAACAAACTCATAGGTGTCGAACTTGCAAGGCCCGAA
ACATTGTATAACGCTAATCTAATGGCCGAGCTGATCTAG--CTACTTCACTGGCTCTCTAGTGGCCTAACTATTTCTGTT
CGTTTATTCCCACAGTGGCTACATGTCCTAATGCCCATCATCATCCATCGAGCAGCTGTCCTGTCCCTGTGGTGGATCTC
ATGCCACTCTAACTGGGCGCAAGAGTTTAGTTCTGTCCCTAAGCTAAACTAATGCGGGTGACGAGAAAAGCTAGAGGCCG
ACCGGGCATCTAGTTGGGCCACTGATTGATGAAA--AAAAATAAAGCAGGGTTTGGCGTGGATTAACTGGAATAATTAAA
AATGATAATTACGGTAGACAAGACTACTCGGGCAAGTCAAGTCATGGAATGTGCAAGCAAAGAGGGGAGAAAATAAATTA
ACCCGCAATGTT-------CTCTTGGGAAAGCAAAGGTTAACTGATGGAGGATTAGTTTATAGCGGGCATAGCATTGTTT
TGGATATAGTTGGCCCC-GAAAGGAGAAAGGTGGTGGTGGTGTGTGTG--CGCGCCTCATGGCCTTGTACCAAATCGACA
AGGCGAAAGCCGCGAAACTCTAGAAAAAACAATGGACAGAGAGAGAAGATGGCTTCTCCCTCTGGACTGAGGCAA-----
----GCAGGCAGAGCCGCCTTGGCTGCCAGGCTATAAAAGGAAGGCCCTCGCACCAACCCGGCCATTGCCTCCTCCGCTC
ACCCAGAGCTAGTTAAGCAGCAAGCAAGCCCGTCGAGAAGCGAAACCGAGCCACGACC----ATCTGCTTTCTGGCTCCT
AATAAGCCCAGCTCTCTCCACTCCCCATCGATCTCCACCGATCAAGCGACCATGCTTCACCATTACCACCATGGCGAAGT
GGCCAGCCTGCACTGCCTCTCGCCCCCGAACCCGCCGTTCCACACCCACTATCACCACCCCGGCATGATCGCCGCCAGCA
TGACGCCCCCTCCGCCCTTCCACTTCTCACCGGCAGCCTATGAGTATGAGGACGAGCCTATCCTGCAGGAAGCGCTGGCT
GCCATCGGCGATAACAGCCCGCCCGGCTCCGGCGGGGC---TG---ATGACATCCATGGCCAGGTGCTGGCTTCAGCGGC
GGAGGAGGAGCGGAGGCGGCGGAGGATGGTGTCCAACCGCGAGTCGGCGAGGCGGTCGCGCATGCGCAAGCAGCGGCAGC
TCAGCGAGCTGTGGGCGCGGGTGGCGCACCTCCGCGGCGCCAACCGCCGCCTCCTCGACGAGCTCAACCGCGCAATGAGG
AGCTGCGGCGACGTCCGCCGCGACAACGACCGGCTCGGCGCCGAGAAGGCCGAGCTGGAGGCCAGGCTCGAGCAGCTCAT
GCAGCAAGCACAACAGAGCACCAAA---TCCTCAGAGCCATGCGAGGAAAACACCACTGCC---GCTGCTGCCGCTGCTG
AATAAACCATTCTTATCTTCTCATTTTAACTACCAGGATCGTTAATTATTACTGTAGTATACTCAAATAAGGCGTGCGTT
GAGGGGTTTGATCGGCTTAATCGTTTCTTAATTTTATTAAGACTGGGGTAATAATACATACCCTTAGCTACGTACTACTA
CTGCCCATTACTGTCATCTTTTTTGGCAAGGTGCAAGTGGCTAGATGAATATGGATTGGGTGTTACTGACGAGTTGCCGT
CAGTGGACAAATTATAGTGCAACATGATCATACGGATGATGAAACAAGAAACCGCTCGAAACCAGTGTGGAATGAGAAAC
CATACAAT------------------------------------------------------------------------
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>chr5A_3
CATGCAC-GCCTTATGCTCCACAGGGAGAGGGATTGTGCCTAACCCTTCCCTGTCTAAATAAGCCCTAAAATGCTGTCGC
GTCCCTCCTGAATATACCCAAGGTATATGGCAAATCCGATCAAGATCTAGCTTTAGTTTTTCTTTTGGAAATCAGATGCA
GGAGATAATAATATACCAAACCACCATGCATG----------------CGTCCTTGCTCGTAGGCTCGACACCATGCTAG
TGATCCAAAGTTGGGTTTACTAATCAAAGGACCTGGGATTCCCGAACAAACTCATAGGTGTCGAACTTGCAAGGCCCGAA
ACATTGTATAACGCTAATCTAATGGCCGAGCCCGAGTTGATCTACTTCACTGGCTCTCTAGTGGCCTAACTATTTCTGTT
CGGTTATTCCCACAGTGGCTACACGTCCTGGTGTCCATCATCATCCATCAAGCAGATGTCTTGTCCCTGTGGTGGATCTC
ATGCCACTCTAACTGGGCGCAAGAGTTTAGTTCTGTCTCTAAGCTAAACTAATGCGGGTGACGAGAAAAGCTAGAGGCCG
ACCGGGCATCTAGTTGGGCCACTGATTGATGAAA--AAAATTAAAGCAGGGTTTGGCGTGGATTAACTGGAATAATTAAA
AATGATAATTGCGGTAGACAAGACTACTCAGGCAAGTCAAGTCATGGAATGTGCAAGCATGAG----------TAAATTA
AACCGCAATGTT-------CTCTTCGGAAAGCAAAGGTTAATTGATGGAGGATTTAAATATAAGGGGCATAGTATTGTTT
TGGATATAGTTGGCCCC-GAAAGGAGAAAGGTGGTGGTA--GTGTGTG--TGCGCCTCATGGCCATGTACCAAATCGACA
AGACGAAAGCCGCGAAACTCTAGAAAAAACAATGGAGAA----AGAAGATGGCTTCTCCCTCTGGACTGAGGCAAACTGG
CAAAGCAGGCAGAGCCGCCTTGGCTGCCAGGCTATAAAAGGAAGGCCCTCGCACCAACCCGGCCATTGCCTCCTCCGCTC
ACCCAGAGCTAGTTAAGCAGCAAGCAAGCCCGTCGAGAAGCGAAACCGAGCCACGATCATCGATCTGCTTTCTGGCTCCT
G---AGCCCAGCTCTCTCCACTCCCCATCGATCTCCACCGATCAAGCGACCATGCTGCACCATTACCACCATGGCGAAGT
GGCCAGCCTGCACTGCCTCTCGCCCCCGAACCCGCCGTTCCACACCCACTACCACCACCCCGGCATGATCGCCGCCAGCA
TGACGCCCCCTCCGCCCTTCCACTTCTCACCGGCAGCCTACGAGTATGAGGACGAGCCTATGCTGCAGGAAGCGCTGGCT
GCCATCGGCAATAACAGCCCGCCCGGCTCCGGCGGGGC---TGGTGATGACATCCATGGCCAGACGCTGGCTTCGGCGGC
GGAGGAAGAGCGGAGGCGGCGGAGGATGGTGTCCAACCGCGAGTCAGCGAGGCGGTCGCGCATGCGCAAGCAGCGGCAGC
TCAGCGAGCTGTGGGCACGGGTGGCCCACCTCCGCGGCGCCAACCGCCGCCTCCTTGACGAGCTCAACCGCGCAATGAGG
AGCTGCGGCGACGTCCGCCGCGACAACGACCGGCTCAGCGCCGAGAAGGCCGAGCTGGAGGCCAGGCTCGAGCAGCTCAT
GCAGCAAGCACAACAGAGCAACAACGCCTCCTCAGAGCCATGCGAGAAAAACACCACTGCTGCTGCTGCTGCCGCTGCTG
AATAAACCATTCTTATCTTCTCAATTTAACTACCAGGGTCGTTAATTATTACTGTAGTATACTCAAATAAGGCGTGCGTT
GAGGGGTTTGATCGGCTTAATCGTTTCTTAATTTTATTAAGATTGGGGTAATGATACATACCCTTAGCTACGTACTACTA
CTGCCCATTACTGTCATCTTTTTTGGCAAGGTGCAAGTGGCTAGATGAATATGGATTGGGTGTTACTGACGAGTTGCCAT
CAGTGGACAAATTATAGTGCAACATGATCATACGGATGATGAAACAAGAAACCGCTCAAAACCAGTGTGTAATGAGAAAC
CATACAAT------------------------------------------------------------------------
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>chr4A_2236
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--------------------------------------ATCTCTACTCCTAATGGACGGATTGGTTGAATAGT-CCCCCC
-ACTTTCAACCGGTTTATTTTCAACCGGTTTATTTTCAACCGGTTTTTCTTCGTCCCACCTCCCACCAGCCCCTCCCACC
GGTTTTTCTCTTTTCTCGTCTGACCGGCAATACCCAACGTATTTATGGTAATCAATCATAATTAATCCATGTATATTAAT
T-ATCAATCCAGGTATGGTAAGGTCATAATCTCTACTCCTAATGAACGAATTGGTTGAATAGTCCCCCCCACTTTCAACC
GGTTTATTTTCAACCGGTTT---------------TTCTTCGTCCCACCTCCCACCAGCCCCTCCCACCGGTTTTTCTCT
TTTCTCGTCTGACCGGTAATACCCAATGTATTTATGGTAATCAATCATAATTAATCCATGTATATTAATT-ATCAATCCA
GGTATGGTAAGGTCATAACTCAAGAAATTTTGAATATGGCAATTATATGGTAATAAATTTAAATTACCCCAAAGGTTATC
AATCCAGATATGGTAAGGCCATAACTCGGGAAATATCGAATATGGTAATAAATTTAAATTACCACCAGGTATGGT
>chr4A_2237
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---------------------------------------TCTCTACTCCTAATGGACGAATTGGTTGAATAGT-CCCCCC
CACTTTCAACCGGTTTATTTTCAACCGGTTTATTTTCAACCGGTTTTTCTTCATCCCACCTCCCACCAGCCCCTCCCACC
GGTTTTTCTCTTTTCTCGTCTGACCGGCAATACCCAACGTATTTATGGTAATCAATCATAATTAATCCACGTATATTAAT
T-ATCAATCCAGGTATGGTAAGGTCATA-TCTCTACTCCTAATGGACGAATTGGTTGAATAGT-CCCCCCACTTTCAACC
GGTTTATTTTCAACCGGTTTATTTTCAACCGGTTTTTCTTCGTCCCACCTCCCACCAGCCCCTCCCACCGGTTTTTATCT
TTTCTCGTCTGACCGGCAATACCCAACGTATTTATGGTAATCAATCATAATTAATCCACGTATATTAATT-ATCAATCCA
GGTATGGTAAGGTCATAACTCAGGAAATTTTGAATATGGCAATTATATGGTAATAAATTTAAATTACCCCAAAGGCTATC
AATCCAGATATGGTAAGGCCATAACTCGAGAAATATCGAATATGGTAATAAATTTAAATTACCACCAGGTATGGT
>SNPs
S------------------------------------------------S------------------------------
------------------S-----------------------------------------S-------------------
-------S------------------------SSSSSSSSSSSSSSSS--------------------------------
----------S-----------------------------------------------------S---------------
-------------------------------S------------------------------------------------
S-------------------------------------------------S-----------------------------
-----------------------------S-----------------------------------------------S--
----------------------------------SS---------------------S----------------------
---------S--------------------------------------------S---S---------------------
-----------SSSSSSSS------------------------------------------S------------------
-----------------S------------------------------SS------------------------------
--------------------------------------------------------------------------SSSSSS
SSS-----------------------------------------------------------------------------
----------------------------------S-------------------S-------------------------
-----------------------------S----SSS-------------------------------------------
----------------------------------------------------------------------------S---
----------------------------------S---------------------------------------------
--------------------------------------SSS---------------------------------------
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-----------------------------------------------------------S--------------------
--------------------------------------------------S-----------------------------
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-----------------------------------------------------------------------S--------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------S------
-------------------------S------------------------------------------------------
---------------------------------S-----------------------------------------S----
SS------------------------------------------------------------------------------
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----------------------------------------------------------------S----SS---------
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-------S--------------------------------------------------------S----------
>forward_205
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-------------------------ATGCATGCATCCTTCCTCGT-----------------------------------
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>reverse_2215
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------------------------------------------------------TCTTTTCTCGTCTGACCGGC------
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