>input_sequence_68837
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-------------------------------------------------------------------------ATGCTCG
GCCTCTGCGTCCTCTGCGGCGCGCCACCGGCCACCGTCTCGGCACCGCCGCCGAGAGCCCGCTGCAGCGCGCCGGAGAAG
AGCGGCCGGGCGTTCCTCCTGGGCGTCCCTGCGGCCGTCTCGCTCTCGCTCGCCCTCTGGTCCACCCCAGGTAGAGTGCA
AATTCCTCACACAGTCAA----TCACGTATGTTTCCATTCCACGTACGACAACGGCCAAC---------ACCGTTGAAAT
TTGTGTGCGGACTTGCAGTGAGCGCCGGCATCCTGTCAGGGTCCACCGGGCTGGAGTCGGTTCCAGCGCCCCCGATGCCC
CGGCTCGAGTTCCTGGACAAATGGAATGGTTGGTTCAGCTAGCTAAT---------------------------------
------------------------------------------------------------------------AGCTCTAC
ACTATCTCATCTAATACA------TATCAA--------------------------------------------------
--------------TTTATTTATTTTCCGTTAATTTGCACTGAATGAATTCTGAAGCGGAGAACCAGAGGAAGTACGCGG
AGAATGACTCGAGGTTCAAGTCCTCCAAGGTGCTCAAGGAGCTGCTGGAGAAGTCCAAGCAGAACAAACAGAAGTATGTG
CTCGTGCTCACGTCTGTTTGCTCACTCCTGTGCTGGAACCAAGCTCTCTAACTGACTCC--------GTCCCATGTTCAT
GTGATCAATCTCTTTCGGGGCAAAATTTGTTGTTGATATCAGGAACGAGAGGGAGATCCAGGACAAGTACTGCCTGCGGG
GCGCCGAGTGGGGCGTCGGCGACTGCTCCACGGTGGGGATGACGGACCAGGAGAAGGAGGACTTCATCACAGAGCTCAGG
AAAAGAGTTGGGGAATGA--------------------------------------------------------------
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>chr4A_1_TraesCS4A01G052600
AGTAAGAGCTCATAGAAAAGTACGTGGAGGGTGGTAGATTTGCATGCGTTTGGTTGTGATGCCGTGAGGGAATATTTCTT
CATTAGTGTTGGTCAATTTGAGCGTTTAGCCAGGTTTTAAGGTGACTTTAACACCATGCAGGCTAAGTCATCTATATCTA
TCTATATCAATATAAAAAGACCCAAAGAGGCAGGTCCAATTAATCTCGGCCATCAAATCATGTCAATCCAACGACATAGA
CTGCTTCAATATCGAGCGATCAACACGTTTAGCGTGCAGTTAATTTCATGCCAAATATAGTACTAATCACATAATAACAC
GCAAATAATATCTTATTTAATATCTGCATGCACTTAATATACTTTCAGATTAACGTGCATTGCACATAGTAAAAAAAGAA
AAGAAAAAAACAACCGAGCAAGCTAGAACGTGGAGCCACGTAGATAGCCAAACAGGCGAAAAAGTAAAGATTTCGCTTAC
ATTATGAAACGAACGAAGGGAGTATCTGCCAACTTCCTTGCAATCCCACCAAGTTTTCTACGCGAACAGTGGCGTAGCTA
GGGGGTGGCAGGATGGTCCATGGACCACCCTGGAATTTCCCCATAGCTTGTATATAATGTAGTAAACAATATTTTTTTGA
AAATAAATAAATTTATGTAAATATTTCTATTGATGGACCACCCTGATCTATTGGGCTGGCTACGCCACTGTACGCGAACC
AAACAAACTCCGAGCGTATCGTTTGATCGCCGCTGCAAGACTCGCATACATACACA--GAAGAAAAAGATCCAAAGGGCA
ATCTCCGGGATCACCCCCATCGTTCGTGGCTGACAAGAGAACAGGTAGTGAGAGTGGCGCCCACCCTTCCCCAATCCGCC
CACCAGCAACCTCCCAC---------GTCAGTCAGAGTAGCTCAACGGCTCATCCATCCATTCATC--------CTCTCG
CCTACGTTGAGGCAGCCCACCAGCACGAGCAAGAAACCACTGAACACTAGCGAGGCG--------------CCATGCTCG
GCCTCTGCGTCCTCTGCGGCGCGCCACCGGCCACCGTCTCGGCACCGCCGCCGAGAGCCCGCTGCAGCGCGCCGGAGAAG
AGCGGCCGGGCGTTCCTCCTGGGCGTCCCTGCGGCCGTCTCGCTCTCGCTCGCCCTCTGGTCCACCCCAGGTAGAGTGCA
AATTCCTCACACAGTCAA----TCACGTATGTTTCCATTCCACGTACGACAACGGCCAAC---------ACCGTTGAAAT
TTGTGTGCGGACTTGCAGTGAGCGCCGGCATCCTGTCAGGGTCCACCGGGCTGGAGTCGGTTCCAGCGCCCCCGATGCCC
CGGCTCGAGTTCCTGGACAAATGGAATGGTTGGTTCAGCTAGCTAAT---------------------------------
------------------------------------------------------------------------AGCTCTAC
ACTATCTCATCTAATACA------TATCAA--------------------------------------------------
--------------TTTATTTATTTTCCGTTAATTTGCACTGAATGAATTCTGAAGCGGAGAACCAGAGGAAGTACGCGG
AGAATGACTCGAGGTTCAAGTCCTCCAAGGTGCTCAAGGAGCTGCTGGAGAAGTCCAAGCAGAACAAACAGAAGTATGTG
CTCGTGCTCACGTCTGTTTGCTCACTCCTGTGCTGGAACCAAGCTCTCTAACTGACTCC--------GTCCCATGTTCAT
GTGATCAATCTCTTTCGGGGCAAAATTTGTTGTTGATATCAGGAACGAGAGGGAGATCCAGGACAAGTACTGCCTGCGGG
GCGCCGAGTGGGGCGTCGGCGACTGCTCCACGGTGGGGATGACGGACCAGGAGAAGGAGGACTTCATCACAGAGCTCAGG
AAAAGAGTTGGGGAATGAACGGACCACGCTGCAGCATCCGACTCAATTGCTCGCCAGAAACAGAGTTCTGGCACTGCAGA
GCTGCTTCTTGCCACAGCGGCAGGATGTAGTGGTAGCATAGTTATTACTAGAGAAAGAGAGATTTGATCTGAGGGGGGGA
TG------------------------------------------------------------------------------
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----------------------------------------AACAGTTGGCAAATACACAATCTAGTTCAGAACAGCT---
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-------GATGGTTTAAAAAGGTCAATGGGAATAGTGGCCTCTTGTTATGTCAGTAGTACTCCATGCGAAATTTGAATTT
TCTCCGTCAGTTA--------------------ACTGTTAGTGTAAGCCTTACCACCAACAAACCCA---TAAGGAAAAG
TAACTGGTGGCGCACTTCGATAGTTCAAAAATCCATTTGAATACCGACGGATATGAAACTCGATTGACAGAGCATCAGAT
TGCTCAACACAAGAGATGAGCATACAACCGACATTCTCCCTGTACCAAAATCAAACTGCACGTGAGTAAAACCATCACAG
AGAGCACGTCTGAAAAGGAAGTTGATCAAACGAAG----CGATCGATCTTTTCATTAGCCGAAGAGTAATACAGATAATC
ATATTCCTCGAAGCTAGAAACTCAACTTCAAGATTCTTAAACCCTAATACATCTAACGTGAAAAGTTTTCCATATGTGAA
AACATGATTACATGATCTTGCTTCTGCCAAGTGACACGAGTTCACTATTAGCTTCCGGCTCTGGATGGGTGTCCAGGCAG
TACTAGTAGAATCCGATGATTTCCCAGTCTTGTCTCTGATATCGAGATGGCAGTACAAGGGCTGGCATTCTCGCTTAACC
CTTCCTTGATCATATCCTTTGGGTCAATAAGAGGATATATTCCCGTCTTCCCGGTTCCATGGTTTATTCAGAAGATAATT
CTGCTTTAGTCTGAAAAAGCCCAGTAAAGCATGTTGAGATGACTGATGCGTCTTTCCATGGAACTAAATATTCCCGAGGC
ATCTCAAAGTATCATCAGCTGCTTGCCAGTAAAATGACCTGCTGCTGACTGAT
>chr4D_728
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-------CTCCAAACGTATCGTTTGATCGCCGCTGCAAGACTCACATCTACTCCTACTGAAGAAAAAGATCCGAAGGGCA
ATCTCCGGGATCACCCCCATCGTTAGTGGCTGACAAGAGAACAGGTAGTGAGAGTGGCGCCCACCCTTCCCCAATCCCCC
CACCCGCAACCTCCTCACTCGA----------CAGAGTAGCTCAACGGCTCATCCATCCATCCATC--------CTCTCG
CCTACGTTGAGG----CCACCAGCACGAGCAAGAAACCACTGAACACTAGCGAGGCAGCCAGGCCAAAGCACCATGCTCG
GCCTCCGCGTCCTCTGCGGCGCGCCACCGGCCACCGCCTCGGCACCGCCGCCGAGGGGCCGCTGCAGCGCGCCGGAGAAG
AGCGGCCGGGCGCACCTGCTGGGCGTCCCCGCGGCCGTCTCCCTCTCGCTCGTCCTCTGGTCCACCCCAGGTAGAGTGCA
AACTCTTCACACAT------AGTCACGCATGTTTCCATTCCACGCACGGCAATGGGCAAC---------ACCGTTGAAAT
TCGTGTGCGAACTTGCAGTGAGCGCCGGCATCCTGTCAGGGTCCACCGGGCTGGAGTCGGTTCCAGCGCCCCCGATGCCC
CGGCTCGAGTTCCTGGACAAATGGAATGGTTGGTTCAGCTAGCTGCT---------------------------------
------------------------------------------------------------------------TGCTCTAC
GCTATCTCATCTAGTTCTAGATACATCCATTTTCGAGACAAGTAATTCCGAACGGAGGGAGTATATGAGAATCCTTTTCT
TTTTGCTCAGTATGTTTATTCATCTCTCCTTGATTTGCACTGGATTTATTCTGAAGCGGAGAACCAGAGGAAGTACGCCG
AGAATGACTCGAGGTTCAAGTCCTCCAAGGTGCTCAAGGAGCTGCTCGAGAAGTCCAAGCAGAACAAAGAAAAGTATGTG
ATGCCATGGGCTGATTTTGAAGCTCTAGCTGCCGTTCTTTTCCTCTTGTACTTGTGTGATAGCTTTGGTGCCACGTTCAT
GTGATGAGCCTCTCTTGGGCGAAAAAATGGCATTGCTTTCAGGAACGAGAGGGAGATCCAGGACAAGTACTGCCTGCGGG
GCGCCGAGTGGGGCGTCGGCGACTGCTCCACGGTGGGGATGACGGACCAGGAGAAGGAGGACTTCATCACGGAGCTCAGG
AAAAGAGTTGGGGAATGATCAGACCACGCTGCAGCATCCGACTCAATTGCTCGCCGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAGTTGGCAAATACACAATCTAGTTCAGAACCG-----
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-----CAGATGGTTTAAAAAGGTGAATGGGAATTGTGGCCTCTTGTTCTGTCAGTAGTACTCCATGCGAATTTTAAATTT
TCTCCGTCAGTTCTTGAACCACAGCGGCCTGTTACTGTTAGTGTAAGTCTTACCATCACCAAACC-A---TAAGGAAAAG
TAACTGGTGGCGCACTTCGATAGCTCAAACATCCATTTGAATACCGACGGATATGAATCTGAATTGACAGATCGTCAGAT
TGCTCAACACAAGAGATGAGCATACAACCGATATTCTCCCTGTACAGAAATCAAACTGCACATGAATAAAACCATCACAG
AGGGCGCATCTGAAAAGGAAGTTGATCAAACGAAGCGATCGATCGATCTTTTCATTAGCCAAAGAGTAATACAGATAATC
ATATTCCTTGAAGCTAGAAACTCAACTTCAAGATTCTTAAACCCTAATACATCTAACGTGA-AAGTTTTCCATATGTGAA
AACATGATTACATGATCTTGCTTCTGCCAAGTGACATGAGTTCACTATTAGCTTTCGGCTCTGGATAGATGTCCAGGCAG
TACTAGTAGAATCCGATGACTTCCCAGTCTTGTCTCTGATATCGAGATGGCAGTACGAGGGCTGGCATTCTCGCTTAACC
CTTCCTTGATCATATCCTTTGGGTCAATAAGAGGATATATTCTCGTCTTCCCGGTTCCATGGTTTATTCAGAAGGTGATT
CTGCTTTAGTCTCAGAAAGCCCAGTAAAGCATGTTGAAATGACTGATGCGTCTTTCCATGGAACTAAATATTCCCGAGGC
ATCTCAAAGTATCATCAGCTGCTTGCCAGTAAAATGACCTGCTGCTGACTGAT
>chr4B_728
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-------CTCCAAACGTATCGTTTGATCGCCGCTGCAAGACTCACAT----ACACA--CAAGAAAAAGATCCGAAGGGCA
ATCTCCGAGATCAGCCCCATCGTTAGTGGCTGACAAGAGAACAGGTAGTGAGAGTGGCGCCCACCCTTCCCCAATCC-CC
CACCCGCAACCTCCTCACTCGACCAGGTCACTCAGAGAAGCTCAACGGCTCATCCATCCATCCATCCATCCCGTCTCTCG
CCTACGTTG----AGCCCACCAGCACGAGCAAGAAACCACTGAACACTAGCGGG--------------GCACCATGCTCG
GCATCCGCATCCTCTGCGGCGCGCCACCGGCCACCGCCTCGGCACCGCCGCCGAGGGGCCGCTGCAGCGCGCCGGAGAAG
AGCGGCCGGGCGTTCCTGCTGGGCGTCCCCGCGGCCGTCTCCCTCTCGCTCGTCCTCTGGTCCACCCCAGGTAGAGTGCA
AATTCTTCACACATAGACATAGTCACGTATGTTTCCATTCCACGCACGGCAATGGCCAACAGGCCCAACACCGTTGAAAT
TCGTGTGCGGACTTGCAGTGAGCGCCGGCATCCTGTCAGGGTCCACCGGGCTGGAGTCGGTTCCAGCGCCCCCGATGCCC
CGGCTCGAGTTCCTGGACAAATGGAATGGTTGG-TCAGCGAGCTACTCTCTCCGTTCCAAATTACTCGTCGCTGAAATGG
ATGTATCTAGAATTTAAATACATCTAGATACATCCATACGTGCGACAAGTAATTCGGAACGGAGGGAGTACCTGCTCTAC
ACTATCTCATCTCATACAGTAGTATATCAA--------------------------------------------------
--------------CTTATTTATTTTCCATTAATTTGCACTGAATGAATTCTGAAGCGGAGAACCAGAGGAAGTACGCGG
AGAATGACTCGAGGTTCAAGTCCTCCAAGGTGCTCAAGGAGCTGCTCGAGAGGTCCAAGCAGAACAAAGAAAAGTATGTG
ATGCCATGGCCAGATTTTGAAGCTCTAGCCGCCGTTCTTCTCCTCTTGTACTTGTGTGATAGCTTTGGTGCCACGTTCAT
GTGATGAGCCTCTCTTGGGCGAAAATTTGCCATTGCTCTCAGGAACGAGAGGGAGATCCAGGACAAGTACTGCCTGCGGG
GCGCCGAGTGGGGCGTCGGCGACTGCTCCACGGTGGGGATGACGGACCAGGAGAAGGAGGACTTCATCACGGAGCTCAAG
AAGAGAGTTGGGGAATGAACAGACCACGCTGCAGCATCCGACTCAATTGCTCGCCGGAAACAGAGTTCTGGCACTGCGGA
GCTGCTTCTTGCCACAGCGGCAGGATGTCGTGGTAGCATAGTT---ACTAGAGAAAGAGAGATTTGATTTGAGTGGGAAA
TG------------------------------------------------------------------------------
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----------------------------------------AACAGTGGGCAAACACACAATCTAGTTCAGAATTGCAGAG
AATGGCGTTTTGGCTCTCGGCCTTGATGGAGGCCGATTTTTTGAAAAAATTCAAATTCAAAAATTTCGGTTTCAAAAAAA
TATGACAAAAATTGTACCAAGTAAACAACAATGTGAAGCATATGTGTGTAAAATTTCAGGATGAAATAGTTGAAATGCGA
CATGTACAAAAATGACAACATGATCTGGGAGGATGAATAGTATCACGTTTTATTAAGCCCCAAATTTGTCTTTTCTGCAC
AACCCCCATTTCATCGTATTTCATTCTGAAAATTTACACGGTTGTACACTATGCCTTCATCTATCTCTATATTTTTTCAC
ATGATTTTTTACATGTAAAAATATGAATTTTCAAGAATTTTGAATTTTGCATTTGGAGGCCTCCAAAAGCAATTTCCAAG
AATTACAGATGGTTTAAAAAGGACAATGGGAATAGTGGCTTCTTGTTCTATCAGTAGTACTCCATGCGAAATTTGAATTT
TCTGCGTCAGTTCTTGAACCACAACTGTCTGTTACTGTTAGTGCAAGCCTCACTTACCATCAACAAATCGTAAGCAAAAA
TAACTGGTGGCGCATTTCGATAGTTCAAGAATCCATTTGAATACCAACGGATATGAAACTCAATTGATAGAGCATCAGAT
TGCTCAACACAAGAGATGAGCATACAACCGACATTCTCCCTGTACCAAAATCAAACTGCACAAGAATAAAACCATAACAG
AGAGCACATCTGAAAAGGAAGTTGATCAAACGAAGCGATCGATCGATCTTTTCATTAGCCGAAGAGTAATACAGATAATC
ATATTCCTCGAAGCTAGAAACTCAACTTCAAGATTCTTAAACCCTAATACATCTAACGTGAAAAG-TTTCCATATGTGAA
AACATGATTACATGATCTTGCTTCTGCCAAGTGACATGAGTTCACTATTAGCTTTCGGCTCTGGATAAGTGTCCAGGCAG
TACTAGTAGAATCCGATGATTTCCCAGTCTTGTCTCTGATATCGAGATGGCAGTACGAGGGCTGGCATTCTCGCTTAACC
CTTCCTTGATCATATCCTTTGGGTCAATAAGAGGATATATTCTCGTCTTCCCGGTTCCATGGTTTATTCAGAAGGTGATT
CTGCTTTAGTCTCAGAAAGCCCAGTAAAGCATGTTGAAATGACTGATGCGTCTTTCCATGGAACTAAATATTCCCGAGGC
ATCTCAAAGTATCATCAGCTGCTTGCCAGTAAAATGACCTGCTGCTGACTGAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS----S-S-----------------------------S---SS-S---------------------S-------
------------------------S----------------------------------------------------S--
----S---------SSS-------------S------------------------------S------------------
------------S-------------------------------------------S-----------------------
-----S------------------------------S------------------S-S----------------------
-----------------S-----------S-----------S----------S---------------------------
-----S-------SSS-S--------------------------S---S---S---------------------------
-S------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
------------------------------------------------------------------------S-------
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----------------------------S---------------------------------------------------
----------------------------------------------S---------------------S-S---------
S-SSSSSSSS-SSS-S--SSSS-S--SSSSSS-SSSSSS-SSSSSS-S--SS--SS-SS----------S---S------
-----S-SS----S-S---SS--------SSS---S-S------------------------------------------
----------------------------------------------------------------------S---------
--------------------S----------------------------------S---------------------S--
----------------------------S--------------SSS----------------------S----S---SS-
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-------------------------------------------------------------------------S--S---
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-----------------------------------------------S--------------------------------
------------S------------------------------------------S---------S--------------
-------------------------------------------------------------S------------------
-------------------------------------------------------------S---S--------------
-------S------------------------------------------------------------------------
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------------------------------------S-----------------S-----------S-------------
--------------------------------------------------------S-----------------------
------------------------------------------S-------------------------------S-S---
------------S-S----------------------S------------------------------------------
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>forward_449
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-----------------------------GTGGAGCCACGTAGATAGCC-------------------------------
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>reverse_1790
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-----------------------------GTGCTGGAACCAAGCTCTCT-------------------------------
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>forward_705
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---------------------------------------------ATCTATTGGGCTGGCTACGC---------------
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>reverse_3507
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------------------------------------------------------------------GGGTGTCCAGGCAG
TACTAG--------------------------------------------------------------------------
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