>input_sequence_68816
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---------------------------------ATGGTGATGGCGGAGCCGGAGGAGACCCCGGGATCCCAAAGGCCGTC
GGCGGACCGTGGCTCCGTCGCCGGGGAGCCGTCCCCGCCCGCAGCGGCGACGCCTCGGCGGCTGACGGTGTGGTGCAAGT
CGCTGGTGTTCCGCGGCGACGGGTACGCGGTGTTCGACGACGTGGACGGCCGGATGGTGTTCCGCGTGGACAACTACGGC
GTCGGGCCGGGAAGCATGGCGCTCATGGACCACGCCGGCCGCGTCCTCCTCACCCTCCGCCGCCGCCAACGCAAGGTGAT
CGCTGGTCG------ACCGAGTAGATCTACTCTA----TCTACTTTTTTTTGGC-------TATTATACATTACACGCTC
TGATTAGTTTGCTTCGTGCATGACATGAACCCGTTCGACAATTGGCCGCATGCAGATGCTGAGCTTGATGCCGGAGACAT
GGGAGGTGTACAATGGCGACGTCGACGACGACTCGGCCGCGAACGACGGCCACGGTGAGCCGCACCTCATGATGAGAGCC
ACCAAGGACCTGGGCAGGTCCAGCTGCACCGCCTCCATGCTTGCCGTGGACAAGCCAGAACTCTACCGCCTGAGCTGGTC
CCGGCGGGAGGAGTGGTCGAGGATCCACCGGCGCAGCTCGACCGGCAACGAGACACTCATCGCCGAGGTGCGACGGAAAC
GAGGGGGGCCAGAGAAGGCGACATTGCTGGGCAAGGACGTGCTGTCGCTGGTGGTGCAGCCGGGGATGGACCTTGCCATC
ACCATGGCCATGCTCATGATCTCCAACTCGTACCGATGA-----------------------------------------
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>chr1B_1_TraesCS1B01G122900
GTTCCCCAACTGAATTATTATTCCGATCCTGGGATATCTTC---TAATATCGTAGCCATAAACTATTTGTACACGTGAAT
CACAACCCAAATGTCAACTCTAGGGAGAATATTACATATTTACACCAAAAAATGGCAAAGAAATACATCCACGGGACCAC
CGCCCTGCGCAAGGATACATTTGCAGACTTCAACAATCAAGTTTGTTTACATATCCATGGCCAATCTAACAGTATCATTT
GTATCTGGCCATTTGAAACAATTAATTTTTTCGTCAATTGTCAAAGCTAGAGAAATCTGATGGCCCAACC-TTTTCTTTT
CTGAGTAGATATTGAGCTATTTTATTTGGTTGAAATTTTCCATGTTGATCTGATGTTCCAACTGAATTGGAGTTGCGCAA
TCACACGAGTTGCATCTGATATATTGCAGGAGTTTT--TTTTTTTTGAGAGTTATATTGCAGGAGTATTTGAAAGATAAG
ATAGCACAAAA---ATAT--------------------------------------------------------------
-------------------------------------------------------TATTAGTAGATTTATTTTAGGATTT
CTGGCGACGCGCGTTCAGTGGGAAGAGACGCCTCGTCGACTACGAGGCGTTTTTGGTGACTTCGTCAATCTTAAGATGAT
ATGTCGGCTCGGTCTCTCGGAGGTGCTCATAAGGATAAGGCATGCGTATGCATTCATAGGGATGAGTGTATGCATGTATA
GTGCCTAAAAAAAACTATGTGTTAGATAGCTAGCTGGTCTAGCTAGGTCAACTATGGGATCCCCATAAATTAACTCCGAC
GCGCAAAATT---------------------ATGGTCCCAAAGAATCAGCAGTATCCATTAAT---TTACCAAAAAAATG
CAAAAAAAA-TGCAATCAATGTTCTCAAAAATAATTTTATGCATAAATGGATCTGATAATAAAAATCGAGCAATCCAGAG
TCAAAACAGTGTCGCATCCATGCAGACGCAACGGAGTCCAGATA--GGCTTATAAAGAACAGCAGCACGCGCAGGCGCGC
ACGTCGTCGGAGCTAGCTTGGCAACGACCGACCATGGTGATGGCGGAGCCGGAGGAGACCCCGGGATCCCAAAGGCCGTC
GGCGGACCGTGGCTCCGTCGCCGGGGAGCCGTCCCCGCCCGCAGCGGCGACGCCTCGGCGGCTGACGGTGTGGTGCAAGT
CGCTGGTGTTCCGCGGCGACGGGTACGCGGTGTTCGACGACGTGGACGGCCGGATGGTGTTCCGCGTGGACAACTACGGC
GTCGGGCCGGGAAGCATGGCGCTCATGGACCACGCCGGCCGCGTCCTCCTCACCCTCCGCCGCCGCCAACGCAAGGTGAT
CGCTGGTCG------ACCGAGTAGATCTACTCTA----TCTACTTTTTTTTGGC-------TATTATACATTACACGCTC
TGATTAGTTTGCTTCGTGCATGACATGAACCCGTTCGACAATTGGCCGCATGCAGATGCTGAGCTTGATGCCGGAGACAT
GGGAGGTGTACAATGGCGACGTCGACGACGACTCGGCCGCGAACGACGGCCACGGTGAGCCGCACCTCATGATGAGAGCC
ACCAAGGACCTGGGCAGGTCCAGCTGCACCGCCTCCATGCTTGCCGTGGACAAGCCAGAACTCTACCGCCTGAGCTGGTC
CCGGCGGGAGGAGTGGTCGAGGATCCACCGGCGCAGCTCGACCGGCAACGAGACACTCATCGCCGAGGTGCGACGGAAAC
GAGGGGGGCCAGAGAAGGCGACATTGCTGGGCAAGGACGTGCTGTCGCTGGTGGTGCAGCCGGGGATGGACCTTGCCATC
ACCATGGCCATGCTCATGATCTCCAACTCGTACCGATGACCCTGGCCCCGTCCAAATCGCCAGGGCAACAAATGTTCATG
CATATAGAAGCATCTAGAACATTCCAGAGGTTGTAGAAGAA---GCACGTCGGTATACCCATTGTACATCCCCATATTCT
TTGGGATT-CATTTCAATGTTGCATTCATCCTTCCAGAACAGTTGCAATGTAAACCTTGCAGTGTTGCTGAAGTACTGAA
CGGGTTC--------GCTACCATTTCATCTAAGGCCACACACCATGTTCCCAATAGAGATACCAATAACATGGGAAAGGT
AGGCAAGCAACGCAAAGACGTGCACATCACAACACTAGTCAAACAGACATCACCAAGTGTTTACTTCCCAGGGCAAAACA
ACTCACATGCTACAGCTAATTTACAGATCCTACAGATTCTTCCTCCCCTTCTTGTGTGACAGGTTTGCGCCATTGTCAGT
ACGTAGCAGCATTGTCGTGCAAATCACGGCGAGAACAGCCGCTGTGGCGATAGGCTTACAGCTGGGTACTCGCTGTGCCT
GGCCGCAGCCTGCCTGAATTCATCACACCCCTCGCAGTTGTCTAGCATAGGGAGAAAAATGTATTAAGTACAAGGGCAAT
ACAATGTCTATAGATAATTAACTAATCCCTAATTGGAAGAGCTTACCTCAAAGAAAGAGTTGAAGTTTAGTCTCATCAGA
AACTGCCTCAGGAAAGGTGCTCTCTGACTTCCAGCAAGTCGACTACTCCTTAGGATGGTGTACAGCGAATTTGATTTCTT
GTTGAACTCCTGAATATCGCCAAAT-----GTATGTAAGTTTATGCTACATATACTAGGAAACTAAGCAAAAAGCTGGCT
AGCTAAGACATCCATGAGTGATGTGCCAAGCGCTGGCACGTCACTATTTGTTCACAGAAGGCCGATAGTGTTGGGTGGGA
CAATACCTCAGTTATGTGATCAATCTCAAACATGTTTGAGCCTGTTTCGTATTGCTCGATACTCCAGCAGAACTGCAAGC
AGAGCTTCATTATACT
>chr1D_1
GTTCCCCAACTGAATTATTATTCCGATCCTGGGATATCTTC---TAATATTGTAGCCATAGACTATTTGCACACGTGAAT
CACAACCCAAATGTCAACTCTAGGGAGAATATTACATATTTACACCAAAAATTGGCAAAGAAATACATCCACGGGACCAC
CGCCCTGCGCAAGGATACATTTGCAGACTTCAACAATCAAGTTTGTTTACATATCCATGGCCAATCTAACAGTATCATTT
GTATCTGGCCATTTCAAACAATTAATTTTTT-GTCAATTGTCAAAGCTAGAGAAATCTGATGGCCCAACA-TTTTCTTTT
CTGAGTAGATATTGAGCTATTTTATTTGGTTGAAATTTTCCATGTTGATCTGATGTTCCAACTGAATTGGAGTCGCGCAA
TCACACGAGTTGCATCTGATATATTGCAGGAGTTTTTATTTTTTTTGAGAATTATATTGCAGGAGTATTTGAAAGATAAG
ATAGCACAAAA---ATATCACAAACTTTAGAGAAAGTTCTAACTATGTGTTAGCTGCGAATCAACCTGTAGTTAGATGGT
TAGGTAGACAGTGGTATCCCTAACCCATCAGGGTTTAAATCTTGATGCTCGCATTTATTAGTAGA-TTACTTTAGGATTT
TCGGCGACGCGCGCTCAATGGGAAGAGACGCCTCGTCGACTATGAGGCGCATTTGGTGACTACGTCAATCTCAAGATGAT
ATGTCGACTCAGTCTTTCGGAGGTGGTCATAGGGGTAGAGCATGCGTATATGTTTATAGGAATGAGTGTATGCGCGTATA
GTGTCTAAAAAAAACTATGTGTTAGCTAGCTAGCTGGTCTAGCTAGGTCAACTATGGGATCCCCATAAATTAACTCCGAC
GCGCAAAAAT---------------------ATGGTCCCAAAGAATCAGCAGTATCCATTAAT---TTACCAAATAAAAA
TGCGAAAAATTGCAATCAGTGATCTCAAAAATAATTTTATGCATAAATAAATCTGATAATAAAAATTGAGCAATCCAGAG
TCAAAACAGTGTCGCATCCATGCAGACGCAACGGAGTCCAGATA--GGCTTATAAAGAACAGCAGCACGCGCAGGCGCGC
ACGTCGTCGGAGCTAGCTTGGCAACGACCGACCATGGTGATGGCGGAGCCGGAGGAGACCCCGAGATCCCAGAGGCCGTT
GGCGGGCGGTTGCGCCGTGGCCGGCGATCCGTCCCAGCCCGCGGCGGCGACACCTCGGCGGCTGACGGTGTGGTGCAAGT
CGCTGGTGTTCCGCGGCGACGGGTACACGGTGTTCGACGACGCGGACGGACGGATGGTGTTCCGCGTGGACAACTACGGC
GTCGGGCCGGGAAGCATGGCGCTCATGGACCACGCCGGCCGCGTCCTCCTCACCGTCCGCCGCCGCCAACGCAAGGTGAT
CACTGATCGTGATCGATCGGGTAGATCTATTCTA----TCTACTTTTTTTTTGC-------TATTATACATTACACGCAC
TGATTAATTTGCTTCATGCATGACTTGAACCCGTTCGACAATTGGCCGCATGCAGATGCTGAGCTTGATGCCGGAGACAT
GGGAGGTGTACAATGGCGACGTCGACGACGACTCGAACTCGAACGACGGCCACGGTGAGCCGCACCTCATGATGAGAGCC
ACCAAGGACCTGGGCAGGTCCAACTGCACCGCCTCTGTGCATGCCGTGGACGAGCCACAACTCTACCGCTTGAGCTGGTC
CCGGCGGGAGGAGTTTTCGAGGATCTACCGGCACAGCTCGACCGGCGACGAGACGCTCATCGCCGAGGTGCGGCGGAAAC
GAGGGGGTCCAGAGAAGGCAACATTGCTGGGCAAGGACGTGCTCTCGCTGGTGGTGCAGCCGGGGATGGACCTTGCCATC
ACCATGGCCATGCTCATGATCTCCAATTCGTACCGATGACCCCAACCCA-CCTGAATCACCAGGCGAACAAATGTTCATG
CATATAGAATCTTCTAGAACATTTCGGAGGTCGTGGAAGAAGAAACACGTCAGTATACCTATTGTAAATCCCCATATTCT
TTGGCATT-CATTTCAATGTTGCATTCATCCTTCCAGAACAGTTGCAATGTAAACCTTGCAGTGTTGCTGAAGTACTGAA
CAGGTCTGCTATTCTGCTACCATTTCATCCAAGGCCACACACCATGTTCCCAATAGAGATACCAATAACATGGAAAAGGT
AGGCAAGCAA-GCAAAGACGTACACATCACAACACTAGCCAAACAAACATCACCAAGTGTTTACTTCCCAGGGCAAAACA
ACTCACATGCTACAGCTAATTTACAGATCCTACAGATTCCTCCTCGTCTTCTTGTGTGATGGGTTTGCGCCATGTCGA-T
ACGTAGCAGCATTGTCGTGCAAATCACGGCGAGAACAGCCGCTGCGTTGCTAGGCTTACAGCTGGGTACTCGCTGTGCCT
GGCCGCAGCCTGCCCGAATTCATCACGCCCCTCGCAGTTGTCTAACATAGGGAGAAAAATGTATTAAGTACAAGGGCAAT
-----GTCTATGGGTAGTTAACCGATCCCTAATTGGAAGAGCTTACCTCAAAGAAAGAGTTAAAGTTCAGTCTCATCAGA
AACTGCCTCAGGAAAGGTGCTCTCTGACTTCCCGCAAGTCGACTACTCCTTAGGATAGTGTACAACGAATTTGATTTCTT
GTTGAACTCCTGAATATCACCAAATACTAGGTATGTAAGTTTATGCTATATA--CTAGGAAACTAAGCAAAAGGCTGGCT
AGCTTAGACATCCATGAGGATGTGCCA-------------TCCCTATTTGTTCACAGAAGGCCGATAGTGTTGGGTGGGA
CAATACCTCAGTTATGTGATCAATCTCAAACATGTTTGCGCCTGTTTCGTATTGCTCGATACTCCAGCAGAACTGCAAGC
AGAGCTTCATTATACT
>chr1A_1
GTTTCCCAAGTGAATTATTATTCCGATCCTGGGATATCTTCACGTAATATCGTAGCCATAAACTATTTGTACACGTGAAT
CACAACCCAAATGTCAACTCTAGGGGGAATATTACATATTTACACCAAAAATTGGCAAAGAAATACACTCACAGGACCAC
CGCCCTGCGCAAGGATACATTTGCAGAGTTCAACAATCAAGTTTGTTTACATATCCATGGCCAATCTAACGGTATCATTT
GTATCTGGCCATTTCAAACAA---ATTTTTT-GTCAATTGTCAAAGGTAGAGAAATCTGATGGCCCAACCTTTTTCTTTT
CTGAGTAGATATTGAGTTATTTTATTTGGTTGAAATTTTCCATGTTGATCTGATGTTCCAACAGAATTGGAGTTGCGCAA
TCACACGAGTTGCATCTGATATATTGA---------------------------------AGGAGTATTTGAAAGATAAG
ATAGCACAAAATATATCTCACAAACTTTAGAAAAAGTTCTACTATATGTTAC----------------------------
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----------------------TAGCTAGCTAGCTGGTCCAGCTAGGTCAACTCTGGCATCCCCACAAATTAACTCCGAC
GCGCAAAAATAAATAAGTTATTATCTCATGCATGGTCCCAAAGAATCAGCAGTATCCATTAATAATTTACCAAATAGAAA
TGCAAAAAA-TGCAATCGGTGATCTCAAAAATAATTCTATGCATAAAAAAATCTTATAATAAAAATTGAGCAATCCAGGG
TCAAAACAGTGTCGCATCCATGCAGACGCAACGGAGTCCAGATATTGGCTTATAAAGAAGAGCAGCACGCGCAGGCGCGC
ACGTCGTCGGAGCTAGCTTGGCAACGACCGACCATGGTGATGGCGGAGCCGGAGGAGACCCCGAGACCCCAGAGGCCGTC
GGCGGGCGGTGGCGCCGTCGCCGTCGAGCCGTCCCCGCCCGCGGCGGCGGCGCCTCGGTGGCTGACGGTGTGGTGCAAGT
CGCTGGTGTTCCGCGGCGACGGGTACGCGGTGTTCGACGACGCGGACGGCCGGATGGTGTTCCGCGTGGACAACTACGGC
GTCGGCCCGGGAAGCATGGCGCTCATGGACCACGCCGGCCGCGTCCTCCTCACCGTCCGCCGCCGCCAACGCAAGGTGAT
CACTGATCG------ATCGGGTAGATCTATTCTACTCATCTACTTGTTTTTTGGCTACTGGTAATATACATTACACGCGC
TGATTAGTTAGCTTCGTGCATGACATGAACCCGTTCGACAATTGGCCGCATGCAGATTCTGAGCTTGATGCCGGAGACAT
GGGAGGTGTACAATGGCGACGTCGACGACGACTCGAACTCGAACGACGGCCACAGTGAGCCGCACCTCATGATGAGAGCC
ATCAAGGACCTGGGGAGGTCCAGCTGCACCGCCTCCGTGCTTGCCGTGGACGAGCCAGAACTCTACCGCCTGAGCTGGTC
CCGGCAGGAGGAGTGGTCGAGGATCCACCGTCGCAGCTCCACCAGCGACGAGACGCTCATCGCCGAGGTGCGGCGGAAAC
GAGGGGGGCCAGAGAAGGCGACATTGCTGGGCAAGGACGTGCTGTCGCTGGTGGTGCAGCCGGGGATGGACCTTGCCATC
ACCATGGCCATGCTCATGATCTCCAACTCGTACCGATGACCCC-GCCCCGCCCGAATCGCCAGGCCAACAAATGTTCATG
CATATAGAAGCTTCTAGAACATTTCGGAGGTTGTAGAAGAAGAAGCACGTCGGTATACCTATTGTAAATCCCCATATTCT
TTGGCATTTCATTTCATTGTTGCATTCATCCTTCCAGAACAGTTGCAATGTAAACCTTGCAGTGTTGCTGAAATACTGAA
CGGGTCTGCTAGTCTGCTACCATTTCATCTAAGGCCACACACCATGTTCCCAATAGAGATACCAATAACATGGGGAAGGT
AGGCAAGCAACGCAAAGACGTGCACAGCACAACACTAGCCAAACAAACATCACCAAGTGTTTACTTCCCAGGGCAAAACA
ACTCACATGCTACAGCTAATTTACAGATCCTACAGATTCTTCCTCCCCTTCTTGTGTGACGGGTTTGCGCCATTGTCAGT
ATGTAGCAGCATTGTCATGCAAATCACGGCGAGAACAGCCACTGTAGCTATAGGCTTACAGCTGGGTACTCGCTGTGCCT
GGCCGCAGCCTGCCTGAATTCATCACACCCCTCGCAGTTGTCTAACATAGGGAGAAAATTGTATCAAGTACAAGGGCAAT
-----GTCTATGGATAGTTAACCGATCCCGAATTGGAAGAGCTTACCTCAAAGAAAGAGTTAAAGTTCAGTCTCATCAGA
AACTGCCTCAGGAAAGGTGCTCTCTGACTTCCCGCAAGTCGACTACTCCTTAGGATAGTGTACAGCGAATTTGATTTCTT
GTTGAACTCCTGAATATCACCAATT-----GTATGTAAGTTTATGCTACATATACTAGGAAACTGAGCAAAAAGCTGGCT
AGCTTAGACATCCATGAGTGATGTGCCAAGCACTGGCATGTCCCTATTTGTTCACAGAAGGCCCATGGTGTTAGGTGGGA
CAATACCTCAGTTATGTGATCAATCTCAAACATGTTTGCGCCTGTTTCGTATTGCTCGATACTCCAGCAGAACTGCAAGC
AGAGCTTCATTATACT
>SNPs
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---------------------------------------------------S----------------------------
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--------------S----------------S------------------------------------------------
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--------------------------------------------------S-----------------------------
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-----------------------------------------------------------------S---S----------
SS-----------S---S------------------------S------SS----------S---------S--------
------S---S----S---------S-----S--S--SS----------SSS--S-----S------------SS-----
---S---------------------S------------------------------------------------------
--------S-----------------------------------------------------------------S---SS
SSS---------------S--S--------------------------SS----------------S-------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S-------S--------
-----S-S-----S----------S-----------------S-------------------------------------
------------------------------------------S-------------------------------------
------------------------------------------------------S-------------------------
-S---S----------S--S---------S---------------------S--------------------------S-
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-----------------------------------SS-S-----------------------------------------
------------------------------------S--------------S----------------------------
----------------------------------------------S-------S-----------------S-------
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------------------------------------------SS------S--S----------S---------------
-----------S-----------S-S---------------------------------S------S-------------
----S---------------------------------------------------------------------------
-----SS-------------------------------------------------------------------------
--------------------------------------S------S----------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
SSSSS------S----S-----SS-------------------------------------S-----S------------
--------------------------------S-----------------------S-----------------------
------------------S-------------------------------------------------------------
----S--------------------------S------S---S-------------------------------------
--------------------------------------S-----------------------------------------
----------------
>forward_702
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------------------------------------------CGAGGCGTTTTTGGTGACTT------------------
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>reverse_2381
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------------------------------------------------------------AGGTTTGCGCCATTGTCAGT
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