>input_sequence_68764
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--ATGGCGGCGTCGTGCCACGACGTGGACGTGCCGGGGAAGCCGACGGAGACGGGGACGGCGCTGCTGGAGACGGCGACG
GGCGCCATCCAGGGGTTCGCGCCGATCAACCAGATCCACCAGCACCTCTGCGCGTTCCACTTCTACGGGGACGACATGAC
GCGGCAGGTGGAGGCGCACCACTTCTGCGCGCACCTCAACGAGGACGTGCGGCAGTGCCTCATCTTCGACGGGCCGGAGG
CCGGCGCGCGCCTCATCGGCCTCGAGTACATCGTCACCGAGGAGCTGTTCCTCACGCTGCCCGACGAGGAGAAGCCGCTG
TGGCACACCCACGAGTTCGAGGTCAAGGGCGGCGTCCTCTTCATGCCCGGCGTCCCCGGCGTCGTCGAGCGCCGCGACCT
CGAGCAGGTCGCCAGGACATACGGCAAGACCGTCCACTTCTGGCAGGTCGACCGCGGCGACGCCCTCCCGCTCGGCCTCC
CGCAGATCATGATGGCGCTCACCCGCGAGGGCCAGCTCCGGCAGGATCTCGCCGACTGTATGCGCGCCGCGG---GTTCA
CCGTGA-TTT------------------TCGTTCACCTAG----TGTCAGTGTTGGCTTACTGATTAGTATTATGTGGGT
GCAGGTGTGGAGAAGAAGTTCAGCGTGTCGTTCCAGAAGGAGAGGGAGAACCGGGCGTACATGAGCGGGCCGGCGCACGG
CATCCACCCGCTGGCCAATGCTGCTGGCAAGGGCTTGAAGACGGAGATCCGCGAGGTTGATCTTCCGGCTGCCAATACTG
GAGCCAGGATTTTCACCTGA------------------------------------------------------------
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>chr5D_1_TraesCS5D01G250600
TCATCTGCTGCCATTGTGATCTACATATACAGCTTTCTTGGGAAATGGTGATATTTAGTAGTAAATGCTTGCAATCCTAG
TATTTGAGTGGTTTGAACAAAGTTTTTGTGCTACGTACACTTCGGATTTTAGAATGGTGCATATATGGATCATTATTAAG
CTTTCCTTTTTTTTTGCGAGGATTAGTAAGCTTTCATGTAGATAAACTAGAGCCCCCTATCTCTCTTCAAAACGCCGACA
TTAACATATTTTAAACCGGTTCTGATTTCTGAAATACACTCACATTTGGTCATATTTCAAGCATTAAATGGGTTTTTGTT
CACTCTGATTATAATGGCACAGAAGATTAATCAAATATAGGGATGCCGAAGATGATTCCTCAAACATCAATGATCAGGAA
TGAACAAGAATGTTAAGAGCTCACTGCCAGGCGTTATGTGGATATGCAAGACGCAGCTATTGCAGGTTTTAACCAAGTGG
TCACTTGCATTGACAAGCTAATATAGAGATTACATGTATGCACCTCAGATGACATTTATCGAGAG-----AGTGGCGTAT
TTTGGTGATACGAAATCTACATTTTACACGGCGCGTGTGGTGCGTGAGCAGCGTGACACGGTAGTCCCCGGAGAAAACTG
CACACAACGCCAGGAGAAGTTACACGAGAAACTCTTACACGCTCCATCGTTGA---------------------------
------ACTGCATTTTGTCTCACCGCTCCACGTGCCATACATCATGCGTTAGACGACTCTAGTGTCCTCGTCCG----GA
ACTAGCAGCTTCTCTCATGCGTGTCCCTTCATCCGCATTCTCGTGGCCCCTTCTCAACACGTAGGTGGACTGTCACGGAC
ACGCGCCACCTCAAGGATCACACGTGTGCAGCTGCATGAGCCCACCCACGCCTTAAAAACAGCTGAACCAGCCCGCACCT
GTCCAGAGATTCGAGTACACTCACCTGAGCCACCAGCCTACCAGTACCCCAACACAAACACACAGTCTACGCAGGATCGA
AGATGGCGGCGTCGTGCCACGACGTGGACGTGCCGGGGAAGCCGACGGAGACGGGGACGGCGCTGCTGGAGACGGCGACG
GGCGCCATCCAGGGGTTCGCGCCGATCAACCAGATCCACCAGCACCTCTGCGCGTTCCACTTCTACGGGGACGACATGAC
GCGGCAGGTGGAGGCGCACCACTTCTGCGCGCACCTCAACGAGGACGTGCGGCAGTGCCTCATCTTCGACGGGCCGGAGG
CCGGCGCGCGCCTCATCGGCCTCGAGTACATCGTCACCGAGGAGCTGTTCCTCACGCTGCCCGACGAGGAGAAGCCGCTG
TGGCACACCCACGAGTTCGAGGTCAAGGGCGGCGTCCTCTTCATGCCCGGCGTCCCCGGCGTCGTCGAGCGCCGCGACCT
CGAGCAGGTCGCCAGGACATACGGCAAGACCGTCCACTTCTGGCAGGTCGACCGCGGCGACGCCCTCCCGCTCGGCCTCC
CGCAGATCATGATGGCGCTCACCCGCGAGGGCCAGCTCCGGCAGGATCTCGCCGACTGTATGCGCGCCGCGG---GTTCA
CCGTGA-TTT------------------TCGTTCACCTAG----TGTCAGTGTTGGCTTACTGATTAGTATTATGTGGGT
GCAGGTGTGGAGAAGAAGTTCAGCGTGTCGTTCCAGAAGGAGAGGGAGAACCGGGCGTACATGAGCGGGCCGGCGCACGG
CATCCACCCGCTGGCCAATGCTGCTGGCAAGGGCTTGAAGACGGAGATCCGCGAGGTTGATCTTCCGGCTGCCAATACTG
GAGCCAGGATTTTCACCTGATCTGCCCGTGGCGTG----CGTACGTGTCTGCGAGATGGGTGTATGATAGCT--GGAG--
--ATAGGGTAGTTAATAAAGTGTCAACTACCC-TTTGTTTCGCCTCTTGGAAATGGAGTG----CTCGAAGAA-T----G
AGTTACGAATGACAGT-ATAGGCAGCGCCGGAGGGAGGAACCGTGTATCTAGACTTAGAAGGGGCCAAATGAAACCATCT
TCCACTCAAAGATATTGTTTTATTTTCAAAAAGGGAGCTCTCCGGCCTCTGCATCGGCCACATTTATTAATAAGCAAATA
AGTTCAACACAGGTTTTGATGTCTCAAACAAAAAAACAAAAAGGCAAACAAGCAAATAAGTTCAACACAGGTTTTGATGT
CTCAAACAAAAGAACAAAAAGGCAAATAAGTTCAACACAGGTCTTGATGTCTTAAACAAAAGAACAAAAAATGCTCACAA
AGAGAAAAAAGTAAAAGCAAAGCTAGGTCTTGATGTCTTAGCCATTCTTTCCAGTGAACTCAGACGATTCCTTTTATGCT
GAAACTAGGGAAACAAAAGAACAAAAAATGCTCACAAAGAGCAAAAAAAGTAAAAGCAAAGCCATAACCGGTTGGGAAAC
AAAAGAACAAAAAATGCTCACAAAGAGCAAAAAAAGTAAAAGCAAAGCCATAACCGGTTGGCATACGGAAGATAGCAAAA
CTAATTACCTATCCTATTAGCCACACCCACATCCGGCTGGCATACGAAAGATGGAAAAACTAATTACCTATTTTATTACA
TAACCGTCATCCAAACCGGTTGAAAATAAAAAAAATAACCGTCATTCAAACCGGTTGAAAATAAGAAAAAAAACTAATTA
ACCTATCCGTCATTCAAACCGGTTAAAAATAGTCCGTGCTACTATCTTCCATCGGATAGATCGACCACATATGAATCAAC
ACGGTTTGAAAGATAACCCGTAAAAAATGAGTATTTGTTGGTCTGTTAAAGACCAAATTATTTCTGCAGTTCCAGACTGC
C
>chr5B_520
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---------------------------------------GCACCTCAGATGACATTGATTTATCGAGAAAAGTGGCGTGT
TTTGGTGATACTAAGCGTAGATTTTGCACGGCCCGTGTGATGCGTGACATGTTT-------TAGTCCCTGGAAAAAACCG
CACACAACGCCAGCAGAAGCTGCATC---------------CTCCATCGTTAAAGTATATACTCCGCATCAATTGGGTAT
GAGTACACTGCATCTTGTCTCACCGCTCCACATGCCATTCATCGTGCGTTAGACGACTCTACTGTCCTCGTCCAGGACGA
ACTAGCAGCTTCTCTCATGCGTGTCCCCTCATCCGCATTCTCGTGGCCGCTTCTCAACACGTAGGCGGACTGTCACGGAC
ACGCGCCACCTCCAGTATCACACGTGTA----TGCATGAGCCTACCCACGCCTTAAAATTAGCTGACGCCGCGTCTCTCC
CCTCCTCTCCTCTCCACCATACTCTAGCGCTTTCCCGA---------------ACACAAAACTCGCA----CAGCATCGA
AGATGGCGGCCTCGTGCCACGACGTGGACGTGCCGGGGAAGCCGACGGAGACGGGGACGGCGCTGCTGGAGACGGCGACG
GGCGCCATCCAGGGGTTCGCCCCGATCAACCAGATCCACCAGCACCTCTGCGCCTTCCACTTCTACGGGGACGACATGAC
GCGGCAGGTGGAGGCGCACCACTTCTGCGCGCACCTCAACGAGGACGTGCGGCAGTGCCTCATCTTCGACGGGCCGGAGG
CCGGCGCGCGCCTCATCGGCCTCGAGTACATCGTCACCGGGGAGCTGTTCCTCACGCTGCCCGACGAGGAGAAGCCGCTG
TGGCACACCCACGAGTTCGAGGTCAAGGGCGGCGTGCTCTTCATGCCCGGCGTGCCCGGCGTCGTCGAGCGCCGCGACCT
CGAGGTCGTCGCCAGGACCTACGGCAAGACCGTCCACTTCTGGCAGGTCGACCGCGGCGACGCCCTCCCGCTCGGCCTCC
CGCAGATCATGATGGCGCTCACCCGCGAGGGCCAGCTCCGGCAGGATCTCGCCGACTGTAAGCGCGCGGCGCCGAGTTCA
CCGTGA-TTTCCTTTTTGGTTTCTTGGTTCGTGCACCGAG----TGTC-GTGTCGGCTTACTGATGATTGTAACGTGGGT
GCAGGTGTGGAGAAGAAGTTCAGCGTGTCGTTCCACAAGGAGAGGGAGAACAGGGCGTACATGAGCGGCCCGGCGCACGG
CATCCACCCGCTGGCCAATGCGGCTGGGAAGGGCTTGAAGACAGAGATCCGCGAGGTCGATCTTCCGGCTGCCAATACCG
GAGCCAGGATTTTCACCTGATCTGCCCTTGGCGTG----CGTACGTGTCCGCGAGATGGGTGTATGATAGCC--GGAGAT
ATATAGGGTAGTTAATAAAATGTCTCCCACCC-TTTGTTTTTCCTCTTGGAAATGGAGTGAGTGCTCGAAGAATT----G
ACTTTCGAAAAACAGT-ATAGGCAGTGGCGGAGCGAGGAACCG--GATGTAGAGTTAGAAGGAATCAAATGAA-------
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>chr5A_671
TA------------------------------------------------------------------------------
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----------------------CATT---------------CTCCATCGTTGA---------------------------
------ACTGCGTCTTGTGTCACCGCTCCACGTGCCATACATAGTGCGCTAGACAACTCTGGTGTCCTTGTCCA----GA
ACTAGCAGCTTCTCTCATGCGTGTCCCTTCATCCGCATTCTCGTGGCCGCTTCTCAACACGTAGGTGGACTGCCACGGAC
ACGCGCCACCTCAAGGATCACACGTGTGCAACTGCATGAGCCTACCCACGCCTTAAAAACAGCCGAACCAGCCCGCACCG
CTCC--AGATTCGAGCGAACTCACCCGAGCCACCAGCCCACCAGTACCCCAACACACAAAACTTGCA----CAGGATCAA
AGATGGCGGCGTCGTGCCACGACGTGGACGTGCCGGGGAAGCCGACGGAGACGGGCACGGCGCTCCTGGAGGCGGCGACG
GGCGCCATCCAGGGGTTCGCCCCGATCAACCAGATCCACCAGCACCTCTGCGCCTTCCATTTCTACGGGGACGACATGAC
GCGACAGGTGGAGGCGCACCACTTCTGCGCGCACCTCAACGAGGACGTGCGGCAGTGCCTCGTCTTTGACGGGCCCGACG
CCGGTGCGCGCCTCATCGGCGTCGAGTACATCGTCACCGAGGAGCTGTTCCTCACGCTGCCCGACGAGGAGAAGCCGCTG
TGGCACACTCACGAGTTCGAGGTCAAGGGCGGCATGCTCTTTATGCCCGGCGTCCCCGGCGTCGTCGAGCGCCGCGACCT
CGAGCAGGTGGCAAAGACGTACGGCAAGACCGTCCACTTCTGGCAGGTCGACCGCGGCGACGCCCTCCCGCTCGGCCTCC
CGCAGATCATGATGGCGCTCACCCGCGAGGGCCAGCTCCGGCAGGACCTCGCCGACTGTAAGCACGCCGCGC---GTTCA
CCGTGA-TTT------------------TCGTTCACCTAGCTAGTGTCAGTGTTGGCTTACTGATTAGTATTATGTGGGT
GCAGGTGTGGAGAAGAAGTTCAGCGTGTCGTTCCAGAAGGAGAGGGAGAACCGGGCGTACATGAGCGGGCCGGCGCACGG
CATCCACCCGCTGGCCAACGCTGCTGGGAAGGGCTTGAAGACGGAGATCCGCGAGGTCGATCTTCCGGCTGCCAATACTG
GAGCCAGGATTTTCACCTGATCTGCCCTTGGCGTGTTCTCGTACGTGTCCGAGAGATGGGTGTGTGATAGCT--GGAG--
--ATAGGGTAGTTAATAAAATGTCTCCCACCCCTTTGTTTTTCCTCTTGGAAATGGAGCGAGTGTTCGAAGAA-TGATGG
ACTTCCGAATAACAGTCATAGGCAGTGGCGGAGCGAGGAACCGAGGATGTAGAGTTAGAAGGGATCAAATGAA-------
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>chr5A_990
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-----------------------------------------------------------------------CAGCATCGA
AGATGGCGGCCTCGTGCCACGACGTGGACGTGCCGGGGAAGCCGACGGAGACGGGGACGGCGCTGCTGGAGACGGCGACG
GGGGCCATCCAGGGGTTCGCCCCCATCAACCAGATCCACCAGCACCTTTGCGCCTTCCACTTCTACGGGGACGACATGAC
GCGGCAGGTGGAGGCGCACCACTTCTGCGCGCACCTCAACGAGGACGTGCGACAGTGCCTCATCTTCGACGGGCCGGAGG
CCGGCGCGCGCCTCATCGGCCTTGAGTACATCGTCACCGAGGAGTTGTTCCTCACTCTGCCCGACGAGGAGAAGCCGCTG
TGGCACACCCACGAGTTCGAGGTCAAGGGCGGCGTGCTCTTCATGCCCGGCGTCCCCGGCGTCGTCGAGCGCCGGGACCT
CGAGGTCGTCGCCAGGACCTACGGCAAGACCGTCCACTTCTGGCAGGTCGACCGCGGCGACGCCCTCCCGCTCGGCCTCC
CGTAGATCATGATGGCGCTCACCCGTGAGGGCCAGCTCCGGCAGGATCTCGCCGACTGTAAGCGCGCCCCGCCGAGTTCA
CCATGGTTTTCTTTTGGGGTTTCTTGGTTCGTTCACCGAGATTG--------------------------TTATGTGGGT
GCAGGTGTGGAGAAGAAGTTCAGCGTGTCGTTCCAGAAGGAGAGGGAGAACCGGGCGTACATGAGCGGGCCGGCGCACGG
CATCCACCCGTTGGCCAATGCGGCTGGGAAGGGCTTGAAGACGGAGATCCGCGAGGTCGATCTTCCGGCTGCGAATACCG
GAGCCAGGATTTTCACCTGATCTGCTCTTGCCGTG----CGTACGTGTCCGCGAGACGGGTGTATGGATAGCTGGGTG--
--ATAGGGTAGTTAATAAAATGTCTCCCACCC-TTTGTTTTTCCTCTTGGAAATGGAGTGAGTGCTCGACTAA-T----G
ACTTCCCAAAAATAAT-ATAGGCAGTGGCGGTGTGAGGAACCGAGGATGTAGAGTTAGAAGGAATCAAATGAA-------
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>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S--SS-SS--------------S-
-----------S--SSS--S-----S------S------S-------SSS-SS-SSSSSSS-------S---S-----S-
-------------S-----S-S--SSSSSSSSSSSSSSSSS---------------------------------------
-------------S-----------------------------S-----------------------------S------
------------------------------------------------S-------------------------------
------------------------------S-----------S------------------------------------S
S---SS---------SS--------S------------S-----------------S-S-SSSS-SSSSSS---------
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--------------------S--------------------------------S--------------------------
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-----------------------------------S--------------------------------------------
------------------S-------------------------------------------------------------
------------------------------------------------------------S----------S--------
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---------------------------S-----------------------------S----------------------
---------------------------S---------------------S------------------------------
-------------------S----SS-S------------SS--------------------------------------
-S--S-----S--------------S-S-----S---------S-S--S----S---------SS--------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_432
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------------TTAAGAGCTCACTGCCAGGC------------------------------------------------
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>reverse_2456
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-------------------------------------------------------GCAAAGCCATAACCGGTTGG-----
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