>input_sequence_68760
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-------------ATGGTGGTGTGGAGGGAGAGCTACCTGGACCTCATCCTGATCCCGCTGGGGCTGCTCCTCCCGGCGC
TGTACCACGCCTGGCTGTGGCGGGCCGTGCGGCGCCGCCCGCTCACCACGGCCTTCGGGGTCTACTCGGCGGCACGCAGG
CTGTGGGCGGCCGGCATGATGCGAGACAACGACGACAAGAAGGGGGTGCTGGTGGTGCAGTCCATCCGGAACGTCATCAT
GGGGTCCACGCTCATGGCCACCACCTCGGTGCTCTTCTGCACCGGCATCGCCGCCGTGCTCAGCAGCACCTACTCCGTCA
AGAAGCCGCTGAGCGACGCCGTGTTCGGCGCGCACGGGGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTGCTCGTC
TTCCTCTTCTCCTTCCTCTGCCACACCCTCACCATCTGCTTCCTCAACCAAGCCAGCTTCCTCATCAACACCTCCTGCCT
CCCCCTCCCCGACGCCGAAAAGGACGACGACGGCGCCCGCCTGGTCGGCCTGCAGCTGCCGGCCGGCGCCGTGGGCGACT
ACGTGGGCGAGATCCTCGAGAGGAGCTTCACGCTCAACTTCGTGGGCAACAGGCTCTTCTACGCCGGGGTGCCCCTCCTG
CTCTGGATCTTCGGCCCGCTGCTCGCCTTCCTCTCCGCCCTGGTCATGATCCCCATACTCTACAACCTCGACATGGTGCA
CGTCGCCGCCGACAGAGGAACGAAGGAGCACAGCAGCGGCTGCGTCAACGGCAAGGCGAAGGGGAATGGCTGCATGCAAG
TCTGA---------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G273300
CATGGTGGGACAAAGTTGGACGTGGTCGTCCATGACAGAGGAGATGGCCGGCTGGGTGGGTGCCAAGCCATAGGCGCCCA
CGCGCCGATGCTGACCGGAGTTGTCACCGCCACGGGAAGAGGTGGTGTAGGCGCGGCCGGCCACACGGCTCCCGCGCGCG
CCTCCAGCCCACCTCTGGATGCCGCCACCGTACATCCACTACACCATGGACAATGACGAGAATAGCAGGGCATGAAGACA
ACGGCAACAGTTTTCTTTTTTTCTTTTTTAAGTTTAAGTTAAGTTT-AACTATGCACCCGGAACTTGTTTCGACTGTTTT
AAGTACATGTTACTATATAATTATGTTTTAAG---TTTTTTTTATGTGCGGCTGCTATTTTTGAAATTGGATGCGGACAT
GTTGCAATACGGTCGCGCGTTGGATGCACCGACCGACGGAC-GGCAAAACCAAACACCGGTGTCCGTTTTGTCGCTCCAT
ATGAATGAAATCCGAGTAAAACGCACA----TCTGTTTAGGGTCGTGTCGTTAGGGTTGGCCGAATAACCATTGATCGAA
CCAGAAGACGAACGAAGGGCGACATACGTACGCAACTTGCGATCGATCGAT-GGCATTCCGTTTGTTA--GTCTGGGCA-
---GTGACTCACGAAGGAGGTCGATCGATCGATCAGTCTGCGCCTGGTCGTGTGTGTGTCTGCCTTTAGTCCACTGCTTG
CTGCTTTTAGCTGATTGACCACCAGCAAAAAGGATCCTCGTGGCCGTTGTGTAAGACACCACTATCTCTT----------
CCCCCACCTCAGCTCACCTCAACTCCCTT----------------CCCTATATAACGCACCCATCCATGGACAGGTAGAT
AGAGAGCCACCTCCACACGGTTCATCGCCAGAAAG-GAGCAACGCCTCTCCCCCAAATTCAGGAGCTAGCTTAGC-----
CATCGATCGACAAGCAAGCGTGCTAGTGCCACACGCTTACGCTTTGTTGG-TTCTT----GCTCGATCGTCGTCGTCGGC
CGATCGATCGACCATGGTGGTGTGGAGGGAGAGCTACCTGGACCTCATCCTGATCCCGCTGGGGCTGCTCCTCCCGGCGC
TGTACCACGCCTGGCTGTGGCGGGCCGTGCGGCGCCGCCCGCTCACCACGGCCTTCGGGGTCTACTCGGCGGCACGCAGG
CTGTGGGCGGCCGGCATGATGCGAGACAACGACGACAAGAAGGGGGTGCTGGTGGTGCAGTCCATCCGGAACGTCATCAT
GGGGTCCACGCTCATGGCCACCACCTCGGTGCTCTTCTGCACCGGCATCGCCGCCGTGCTCAGCAGCACCTACTCCGTCA
AGAAGCCGCTGAGCGACGCCGTGTTCGGCGCGCACGGGGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTGCTCGTC
TTCCTCTTCTCCTTCCTCTGCCACACCCTCACCATCTGCTTCCTCAACCAAGCCAGCTTCCTCATCAACACCTCCTGCCT
CCCCCTCCCCGACGCCGAAAAGGACGACGACGGCGCCCGCCTGGTCGGCCTGCAGCTGCCGGCCGGCGCCGTGGGCGACT
ACGTGGGCGAGATCCTCGAGAGGAGCTTCACGCTCAACTTCGTGGGCAACAGGCTCTTCTACGCCGGGGTGCCCCTCCTG
CTCTGGATCTTCGGCCCGCTGCTCGCCTTCCTCTCCGCCCTGGTCATGATCCCCATACTCTACAACCTCGACATGGTGCA
CGTCGCCGCCGACAGAGGAACGAAGGAGCACAGCAGCGGCTGCGTCAACGGCAAGGCGAAGGGGAATGGCTGCATGCAAG
TCTGATCGATCGGTGAACCACCGAAGAAGCGTGAAGTGCAGTCCAGTCAGTTAGAGTAAGCCGAAGGCGTTTCGATCTTT
ACATGTCGAACGACGCTGCCGTACAAGATCAGAGACTAGCTTGACGGGACACAAGATCTAGCCTGACCGAAGCTTCTCGC
CGGGCCGAGGACACGGCGAGAATATCTTCTTTTTTCACGAGAAACTTTCAATCTATTTATTATCAATCCGAACAGTATAA
AGAATAAGATAGATAATAAAAACTATAACCATGTCCATAAACCATCTAGCGAGGACTACAAGCAATGAAGTGAGCCGACC
AAAGAGCTAAACCGAGCTCTAGCCAGAGATAGGGTGACCCAAACATAGCGACCTGAGACCGGGTTTCCCGCACCCAGTCA
GCAGAGAAGGCCCCCGATCCCACCTGCGATACTTTTATAGTACAACTAAAATAGATAGAGAAAATTAGCACATATAGAAA
GCACGAACCTATGATTTCAAACAACTCAAGTCTAAATTTGAATAATAAAATCCAAAAAAAGGTAAAACTTAAATTTATTA
TCAATTGCGGTGGTGGGCCAAAATTAAAGCTCAGCTTACATGTACATTAGGTACTATCCACTGCCGAATTTGTCTATTTT
TTCTCTCGGCACGTGTTATGAATTTTGATTGACATCTTTAGATACCAATGTTATATGTCATATTTATATTTCAGAATCTT
TTAGAAATTAACCTATAAAGTATTAACTATGGATGGTGCAATGTGTACACAACAAATCCGCGATGTACACACGTCGTTTG
TGATGTAGTCCCTCCGTTTCGGAATCAGATTATATAGAGATATTGTAGTATGTTTGTTCACCTATTTCAGTCTGTATGTA
GTCCATACTGAGAGGAGTAAGAAAGATGGACAAAAGTGTGCACCGAGAATCCCCCACCTCCCCCCCTCTCTCTCTCTCAC
GGCATGCTTCCTACGCTGCAATGTATTGTTTGAAACAGAATATAC
>chr5A_1
CATGGTGGGCCAGAGGTGAACGTGGTCGTCCACGACGGAGGAGATTACCGACTGGGTGGGCGCCGAGGCATGGGCGCCCA
CGCACCCACGTTCACCGGAGCCGTCGCCGCCACCAGCAGAGGTGGTGCAGGCGCGACCGGCCACGCGGCTCCCGCAGGCG
CTTCCAGCCCACCTCTGGACGCCGCCACCGTACATCGACCTCATCATGGACAACGATGAGAACGGCAGGGCGTGGAAACG
ACGACGAC----ATTTTTTTTTCTTTTTTAAGTTTAAGTTAAGTTT-A-CTATGCACCTGAGACCTGTTTCAACAGTTTT
AAGTACATGTTAATGCATAATTATGTTTTAAGTG-TTTTTTAAATGCGTGGCTGCTTTTTTT--AATTGAATGCCGACAC
GTTGCGATGTGACCGCGCGTTGGATGCACCGACCGACGAACGGGCAAAACCGAACATGGATGTCCGTTTTGTCGCTTCAT
ACAAATGAAATCCGAACAAAACGAACGTTCGTCCGTTTGGAGTCATG-CGTTAGAGTTGGCCTAATAACCATTGACCGAA
CCAGCAGACGAATGAAGGGCGACGTACGTACGCAACTTGCGATGGATCGATTGGCATTCTTTTTGTTA--GTCTGGGCA-
---GTGACTCACGAAGGAGGTCGATGGATCGGGCAGTGACTCACGAAGGAGGTA-------GCCTTCAGTCCACCGCTTG
CTACTTTCAGCTGATTGACCACCAGCAAAAAGGATCCTCGTGGCCGTTGTGTAAGACACCACTATCTCTCTCTCTCTC-C
C-ACCGCCTCAGCT----TCAACTCCCTTCCCCCAGCTCAGCTCACCCTATATAAAGCACCCATCCACGGACAGGTAGAC
AGATAGCCAGCTCCACACGGTTCATCGCCACAAAGCAACCAACGC--CTCCCCCAAATTCAGGAGC--------------
CATCGATCGACAGAGAAGCGTGCTAGTGCCACACGCTTACGCTTTCTTGG-TTCTTGTTCGCTCGATCATCGTCGTCTGC
CGATCGATCAATCATGGTGGCGTGGAGGGAGAGCTACCTGGACCTCATCCTGATCCCACTGGGGCTCCTCCTCCCGGCGC
TGTACCACGCCTGGCTGTGGCGCGCGGTGCGGCGCCGCCCGCTCTCCACGGCCTTCGGCGTCTACTCGGCGGCGCGCCGG
CTCTGGGCGGCCGGCATGATGCGGGACAACGACGACAAGAAGGGGGTGCTGGTGGTGCAGTCGATCCGGAACGTCATCAT
GGGGTCCACGCTCATGGCCACCACCTCGGTGCTCTTCTGCACCGGCATCGCCGCCGTGCTCAGCAGCACCTACTCGGTGA
AGAAGCCGCTGAGCGACGCCGTGTTCGGCGCGCACGGGGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTGCTCGTC
TTCCTCTTCTCATTCCTCTGCCACACCCTCACCATCTGCTTCCTCAACCAAGCCAGCTTCCTCATCAACACCTCCTGCCT
CCCCCTCCCCGACGCCGAAAAGGACGACGACGGCGCCCGCCTGGTCGGCCTGCAGCTGCCGGCCGGCGCCGTGAGCGACT
ACGTGGGCGAGATCCTCGAGAGGAGCTTCACGCTCAACTTCGTGGGCAACAGGCTCTTCTACGCCGGGGTGCCCCTCCTG
CTCTGGATCTTCGGCCCGCTGCTCGCCTTCCTCTCCTCCCTCGTCATGATCCCGATACTCTACAACCTCGACATGGTGAA
CGTCGCCGGCGACAGAGGGACGAAGGAGCACAGCAGCGGCTGCGTCAACGGCAAGGCGAACGGGAACGGCTGCATGCAAG
TCTGATCAATCGATGATCGTCGGAAGCAAGTGC-AGTGCAGTGCAGTCAGCCAGAGGAAGACGAAGGCGTTTCGATC---
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>chr5D_1
CATGGTGGGACAAAGTTGGACGTGGTCGTCCACGACGGAGGAGATGGACGACTGGGTGGGCGCTGAGCCATGGGCGCCCA
CGCGTCCACGCTCACCGGAGCTGTCACCGCCACGTGAAGAGGTGGTGCAGGCGCAGCCAGCCACGCGGCTCCCGCAGGCG
CCTCCGGCCCACATCTGGACGCCCCCACCGTACATCGACCTCATCATGGACAATGACTAGAACAGAAGGGAGTGAA----
--GACGAG----TTATTTTCTCGTTTTTTAAGTTTGAGTTAAGTTTAA-CTATGCACCCGCGACCTGTTTCAACAGTTTT
AAGTGCATGTTAATATATAATTATGTTTTAAGTGCTTTTTTAAATGTGCGGCCGCTATTTTTGTAATTGGATGCGAATAC
GTTGCGATGCGGTCGCGCCTTGGATGCACCGACCGACGGAC-GGCAAAACCGAACACGGGCATCCGTTCTGTCGCTTCGT
ACGGACGAAATCCGAATAAAACGCACA----TCCCTTTAGGGTCATG-CGTTAGAGTTGGCCTACT----ATTGATCGAA
GCAGCAGACGAACGAAGGGCGACGTACGTACGCAACTTGCGATCGATCGA-TGGCATTCTTTTTGTTA--GTCTGGGCA-
---GTGACTCATGAAGGAGGTCGATGGATCGATCAGTCCGGCC--GGTCGTGTGTGTGTCTGCCTTTAGTCCACAGCTTG
CTGCTTTCAGCTGATTGACCACCAGCAAAAAGGATCCTCGTGGCCGTTGTGTAAGACACCACTATCTCTCTCTC------
C-CCCACCTCAGCT----TCAACTCCCTT----------------CCCTATATAACGCACCCATCGACGGACAGGTAGAC
AGAGAGCCACCTCCACACGGTTCATCGGCACAAAGCGAGCAACGC--CTCCCCCAAATTCAGGAGCTAGCTTAGCTTACC
CATCGATCGACAAGCAAGCGTGCTAGTGCCACACGCTTACGCTTTCTTGG-TT----TTCGCTCGATCATCGTCGTCGGC
CGATCGATCGACCATGGTGGTGTGGAGGGAGAGCTACC------------------------------------------
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>chr5D_534
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--------------------------------------------------------------GAATAACCATTGATTCGA
ACG--AGACGAACCAAGGGCGACGTACGAAGG----TTGCGATCGATCGA-TGGCATTCTTTTTGTTATAGTCTGGGCGG
TGGGTGACTCACGAAGGAGGTCGATGGATCGATCAGTCCGGCC--GGTCGTGTGTGTGTCTGTCTTTAGTCCACAGCTTG
CTGCTTTCAGCTGATTGACCACCAGCAAAAAGGATCCTCGTGGCCGTTGTGTAAGACACCACTATCTCTCTCTCTCTATC
C-CCCACCTCAGCT----TCAACTCCCTT----------------CCCTATATAACGCACCCATCCACGGACAGGT----
---------------------TCATCGGCAGAAAGCGAGCAACGC--CTACCCCAAATTCAGGAGCTAGCTTAGCTTAGC
CATCGATCGACAAGCAAGCGTGCTAGTGCCACACGCTTACGCTTTCTTGGGTTCTT----GCTCGATCATCGTCGTCGGC
CGATCGATCGACCATGGTGGTGTGGAGGGATAGCTATCTGGACCTGATCCTGGTCCCGCTGGGGCTGCTGCTGCCGGCGC
TGTACCACGCCTGGCTGTGGCGGGCCGTGCGGCGCCGCCCGCTCTCCACGGCCTTCGGCGTCTACTCGGCCGCGCGCAGG
CTCTGGGCGGCCGGCATGATGCGGGACAACGACGACAAGAAGGGGGTGCTGGTGGTGCAGTCGATCCGGAACGTCATCAT
GGGGTCCACGCTCATGGCCACCACGTCGGTGCTCTTCTGCACCGGCATCGCCGCCGTGCTCAGCAGCACCTACTCCGTGA
AGAAGCCGCTGAGCGACGCCGTGTTCGGCGCGCACGGGGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTCCTCGTC
TTCCTCTTCGCCTTCCTCTGCCACACGCTCACCATCTGCTTCCTCAACCAAGCCAGCTTCCTCATCAACACCTCCTGCCT
CCCGCTCCCCGACGCCGGTAAGGACGACGACGGCGCCCGCCTGGTCGGCGTGCAGCTTCCGGCCGGCGCCGTGAGCTACT
ACGTGGGCGAGATCCTCGAGAGGAGCTTCACGCTCAACTTCGTCGGCAACAGGCTGTTCTACGCCGGGGTGCCCCTCCTG
CTCTGGATCTTCGGCCCGCTGCTCGCCTTCCTCTCCTCCCTCGTCATGATCCCGATACTCTACAACCTCGACATGGTGAA
CGTCGCCGCCGACAGAGGAGCGAAGGAGCACAGCAGCGGCTGCATCAACGGCAAGGCGAACGGGAACGGCTTCATGCAAG
TCTGATCGAT----------------------------------------------------------------------
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>chr5B_557
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-----AGAAGAACGAAGTGCGACGTACGCAGC----TTG----CGATCGA-TGGCATTCTTTTTGTCA--CTCTAGGCC-
---GTGACTCACGAAGGAGGTCGATGGATCGATCAATCCGGCC--GGTCGTGTGTGTGTCTGCCTTTAGTCCACAGCTTG
CTGCTTTTAGCTGATTGACCACCAGCAA-AAGGATCCTCGTGGCCGTTGTGTAAGACACCACTATCTCTT----------
C-CCCACCTCAGCT----TCAACTCCCTT----------------CCCTATATAACGCACCCATCCACAGACAGGTAGAC
AGAGAGCCAGCTCCACACGGTTCATCGCCAGAAAGCAACCAACGC--CTCCCCCAAATTCAGGAGCTAGCC-----TAGC
CATCGATCGACAAGCAAGCTTGCTAGTGCCACACGCTTACGCTTTCTTGG-TTCTT----GCTCGATCATCTTCGGTT--
-----GATCGATCATGGTGGCGTGGAGGGAGAGCTACCTGGACCTGATCCTGATCCCGCTGGGCCTGCTGCTGCCGGCGC
TGTACCACGCCTGGCTGTGGCGGGCCGTGCGGCGCCGCCCGCTCTCCACGGCCTTCGGGGTCTACTCGGCGGCGCGCAGG
CTCTGGGCGGCCGGCATGATGCGGGACAACGACGACAAGAAGGGGGTGCTGGTTGTGCAGTCGCTGCGGAACGTCATCAT
GGGGTCCACGCTCATGGCCACCACGTCGGTGCTCTTCTGCACGGGCATCGCCGCCGTGCTCAGCAGCACCTACTCCGTCA
AGAAGCCGCTGAGCGACGCCGTGTTCGGCGCGCACGGGGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTGCTCGTC
TTCCTCTTCGCCTTCCTCTGCCACACCCTCACCATCTGCTTCCTCAACCAAGCCAGCTTCCTCATCAACACCTCCTGCCT
CCCCCTCCCCGACGCCGGTAAGGACGACGACGGCGCCCGCCTGGTCGGCCTGCAGCTGCCGGCCGGCGCCGTCGGCGACT
ACGTGGGCGAGATCCTGGAGAGGAGCTTCACGCTCAACTTCATCGGCAACAGGCTCTTCTACGCCGGGGTGCCCCTCCTG
CTCTGGATCTTCGGCCCGGTGCTCGCCTTCCTCTCCGCCGTGGTCATGATCCCCATACTCTACAACCTCGACATGGTTAA
CGTCGCCGCCGACAGAGGAACGAAGGAACACAGCAGCGGCTGCGTCAACGGCAAGGCGAACGGGAACGGCTGCATGCAAG
TCTGATCGATCGATGATCGTCCGAAGCAAGTGG-AGTGCAGTGCAGTCAGCCAGAGGAAGACGAAGGCGTTTCTATC---
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>SNPs
--------------------------------S---S-------------S---------S---S------S--------
------S-S---S-------S-------------S------------S----------------S----------SS---
-------------------S----------------S--SS--S------------------S--------S----S--S
---S-S--SSSS--S---------------------------------S-----------SS--S------S--S-----
------------S----------------------------SS--------------------S---------------S
-----S--S------------------------------------------S-----S------------------S---
-S-------------S-----------------S----------S--S------S-------------------------
----S------------------S-----------------------------------SS-------------------
-------------------------S------------S-SS--S-----------------------------S-----
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-S------------SSSS-------------------------------------------------S-----------S
---------------------------------------------SS---------------------------------
---------------------------------------------S----------------------S-----------
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--------------------------------------------S----------------------------S------
--S--------------------S--------------------------------------S-----------------
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------------------------------------------------------------------------------S-
------------------------------------------------------------S-----S-------------
------------S---S-SS------S-SSSS-S--------S-------SS----S---S----------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_249
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---------------------------------------------------------------------GCATGAAGACA
ACGGCAACA-----------------------------------------------------------------------
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>reverse_2191
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------------------------------AGGGTGACCCAAACATAGCG------------------------------
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