>input_sequence_68728
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---------------------------------------------ATGG-AGCCTCATTTTTTTACTGGATGTAGTAAGC
TAGGT-GCGGATGCTCTTGATCCCTTGTATTTTCTCACCACTACGTATGTCTTGGATGTAAAATGTAAGTTTTTAAAGAG
AGAAAGTTTATTAGTTATCTCTTGCCTATGTATAACTTTGTCAACGTCCATGTTTTTCCAAGTTCTAACCTCTATCTTTT
CACAACAACAGAAGTATGTCCCAGAGATTAAGATAGTCAGCTGAAGATAAATGTTGTATCAGCTATTTCTTGTCTGC-AG
ATAAAAATTTCGCCATGCATGTCTTGTTCTTCGAAATTCCAACCCCTATGTCTTCTTGATGCTCTAGCACTAAATCATGC
ACCTTGCTAGTTCTGTATTTCCCCGCTTCTGTTTAACCCTTATCTTTCTTATAGTGGATCTTAACTGATGAGTTCATGAA
ATGACCATGATGTAACATGTGCATTTGCTTGCATTCGTGCAGTGATTGTTTCCAAGATGGCCAGTGATGAGGATTCACTA
GATGATCAAAACCCTAGATCTTGGACCGTTAGCAACACTAGTGCTGTGAGTTAATGCTACCTTTACTTTCAGAAAGGAAA
GAGTGTACCATGCACCTACCGTTTTGATGTTACTATGTATTCTTTTTATTTTGATTTCTCAGATTAACAAGACAGAAGAA
GCATCCAGCA------CGGTCCAGGATCATCACCCACAAAAAGCAGTAGTGAACTTCTTAAAGGATGAGAATACCACCAA
AACGATCCATGAGCAATGGCAAGCAAAAGCTAAGGTTGCGTCGTAG----------------------------------
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>chr1A_1_TraesCS1A01G076300
TTGAAGCTATTCCTTGATCATGTGGCGAAGCCTTATAGTGAAATAACATTCGAAGAAAAGGTGGTCCTCGCACTTGCAAT
GCGGGCATAATCCGCAATTTGGTCAACCCCGGTTGGG-CAATCTATCGGCAGTCCGAATGCAATTTTGGATGGACAACCA
AGCAAAGAACTTCACCTTCGGGGTGCCCAAGATTTCCAAACGGAGTCACTGATGATCGATCTAGTAGCTCCGAGGAATTG
AGCATGACCGATCTAGTAGCTCTGAGGAATAGAGCTATTAATTCCTCCATTAATTAGATATGTTTTTTGAGGTTGCTTTA
GCCATTGATAACATTAGTAATACCGTATGATATAACACCTCTATTAATAATGGTTGCTCAGATGTTGCTAACAAGCTGAT
CCAATCATGCTAATTCCTTCATCCAAATATATAGGCCTAATACGTTTTTTGAGGTTGCCTTTGGCCATTGATAAGATTAG
TAATATATGGGTTATATGATACAAACATTTACAAACTCCTTTCACATACAAATTTAACGGTA-ACTTCTGTAACATGCAT
GTCATAT-TTATTGTTCTAAATGGTGATCAAAGACAACCTCAAAAAATATATTAGACCCTATATATGTGGATGGAGGGTG
TACACTAATATAATTATATTCTAAACACTATCGAGACAAAAAGATCGAGAGCAGGAAGAAAGAAAAGGACAGAGATTCCC
CTCCTGAAAGCCAAGCTAAAAGGGGCCGCATG--TCCCCACCTCCAGGTCAAGGCAGGCCCTCTATACCAATCCATAAGA
TATCCCACTACCCTTTGTTTTTCCAGTATAAATCTGCGCCCAGGCCTCAGGTGAGCAACATGGAGATGAGCCTTCTGTAC
CACTAGTAGTGGTACTACTACATCTCCGAAGAATCTACAGAGATCTTCATCCCCAACTCGGCGGCAGGCAAGATCTAACG
CACCATCCATTTCCTTTCCTCCTCTCAAGGCTATTGTTCTTCATGATGG-AGCCTCATTTTTTTACTGGATGTAGTAAGC
TAGGT-GCGGATGCTCTTGATCCCTTGTATTTTCTCACCACTACGTATGTCTTGGATGTAAAATGTAAGTTTTTAAAGAG
AGAAAGTTTATTAGTTATCTCTTGCCTATGTATAACTTTGTCAACGTCCATGTTTTTCCAAGTTCTAACCTCTATCTTTT
CACAACAACAGAAGTATGTCCCAGAGATTAAGATAGTCAGCTGAAGATAAATGTTGTATCAGCTATTTCTTGTCTGC-AG
ATAAAAATTTCGCCATGCATGTCTTGTTCTTCGAAATTCCAACCCCTATGTCTTCTTGATGCTCTAGCACTAAATCATGC
ACCTTGCTAGTTCTGTATTTCCCCGCTTCTGTTTAACCCTTATCTTTCTTATAGTGGATCTTAACTGATGAGTTCATGAA
ATGACCATGATGTAACATGTGCATTTGCTTGCATTCGTGCAGTGATTGTTTCCAAGATGGCCAGTGATGAGGATTCACTA
GATGATCAAAACCCTAGATCTTGGACCGTTAGCAACACTAGTGCTGTGAGTTAATGCTACCTTTACTTTCAGAAAGGAAA
GAGTGTACCATGCACCTACCGTTTTGATGTTACTATGTATTCTTTTTATTTTGATTTCTCAGATTAACAAGACAGAAGAA
GCATCCAGCA------CGGTCCAGGATCATCACCCACAAAAAGCAGTAGTGAACTTCTTAAAGGATGAGAATACCACCAA
AACGATCCATGAGCAATGGCAAGCAAAAGCTAAGGTTGCGTCGTAGCCTATAAGCCGGTGTTATCCCGACTGAGCTTTCT
ATTATCCCTAAACTCTCCCATATGCCTATAGTTAAATCATTTTCTGGCCACTCCTCATGCCAGAATTAATGTTCTTGACC
TTGTAAGGCCTTTTCTTGACCTTGTAAGGCCCTCCCCTTACGTTTCTCGTGCCGCCGGGTGTCTCCAACCTCACACTTTC
TCCCCCCTTCTATCCCTCCTGAGCTATCTCCATGCATATTTTGTCTAGCAATCTAGATGAGACATGAGAGATGATATTGG
AATAAAAGTCTGTGGTAAATTAAATTTTTATTTCCATGTGAGTGCTACTATATTTTATGGCCTGATTTGTCCCTACAAAC
ACAAAATATAAGTGAACATATTCATCAATCGCCTCTCATTTGAATATGGGTGTGTGTGTGATCTTGCAACTTGTGCAAAG
GAACGGCTTTTCACACCTAGCTAATTGAGCTTTTAATTCTTGGGGTGATCATGTGTAAGCTTGTACTATATGCATGTGTG
TTCCCATGGATGTGTGCATGG--GGAGGCAGAGTGCAGGTTATCTTTTGTCTTGTTTATCAGGGCATATCAGGGGCGCAA
CATATATATGTAGGCTTTTCTAATCTTCTCCGGGGAAATCATTTTG-----TTGCATTAACTGCTTATACCTGCAGGCTT
TTCAAATCTTCCCCGGGGAAATCATTGCATTGCACTACGCCACTACCTGCATATAAGTTCAGGCTTTCCTGCTGCAGACT
TTTGTATCTCCGCATGTGGCTGTCAAACCGCTCGTGTGACACCACCAAATCATGCAATCTGATATGG-TATCCAAAGTTT
CAGGGACCGC-TATTTTGTCACGTTCTCAAAA-------ACAAATTCCACAATAGTT-AAAATCTAAGCCGTCGAATGAG
GAATGGACGGCTGGATGGTCTTCTTCTTCCTCGAACTGTTTCCTCCCCACGTCCGAATCTGTTT----------------
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---------------------------GAACGCTCTAATTTGTTTGAAGAAAGACTCCTACGTCCT
>chr1D_1
TTGAAGCCATTCCTTGATCATGTCGTGAAGCCTTATAGTGAAACAACATTGGAAGAAAAGGTGGTCCTCGCACTTGCAAT
GTGGGCATAATCCGCAATTTGGTCAACCCTGCTTAGG-CAATCTATCGGCGGTCCAAATGCAATTTTGGATGGACAAACA
AGCAAAGAATTTCACCTTCGGGGTGCCCAAGATTTCCAAACGGAGTCACTGATGACCGATCTAGTAGCTCCGAGGAATTG
AGCATGACCAATCTAGTAGCTCTGAGGAATTGAGCTATTAATTCCTCTATTAATTAAATATGTTTTTTGTGGTTGCTTTG
GCCATTGATAACATTACTAATACTGTATGATATAACACCTCTATTAATAATGGTTGCTCAGATATTGCTAACAAGCTGAT
CCAATCATGCTAATTCTTCCATCCAAATATATATGCCTAATACGTTTTTCGAGGTTGCCTTTGGCCATTGATAAGATTAG
TAATATATGGGTTATATGATAAAAAATTTTACAAACTCCTTTCACATACAAATTTGGCGGTATACTTCTGTAACATGCAT
GTCATAT-TTATTGTTCAAAATGGTGATCAAAGACATCCTCAAAAAATATATTAGACCCTATATATTTGGATGGAGGGTG
TACACTAATATAATTATATTCTAAACACTATGAAGACAAAAAGATCGAGAGCAGGAAGAAATAAAAGGACAGAGATTCCC
CTCCTGAAAGCCAAGCTAAAAGGGGCCACACATATCCCCACCTCCAGGTCAAGGCAGGCCCTCTATACCAATCCATAAGA
TGTCCCACTACCCTTTGTTTTTCCAGTATAAATCTGTTCCGAGGCCTCAGGTGAGCAACAAGGAGATGAGCCTTCTCTAC
CACTAGTAGTAGTACTACTACATCTCCGAAGAATCTACAGAGATCTTCATCCCCAACTCGGCGGCAGGCAAGATCTAACG
CACTATCCATTTCCTTTCCTCCTCTTAAGGCTGTTGTTCTTCATGATGA-AGCCTCACTTTTTTACTGGATGTAGTAAGC
TAGGTCGCGGATGCTCTTGATCCCTTGTATTTTCTCACCACTACGTATGTCTTGGATGTAAAATGTAAGTTTTTAAAGAG
AGAAAGTTTATTAGTTATTTCTTGCCTATGTATAACTTTGACAACGTCCAGGTTTTTCCAAGTTCTAACCTCTATCTTTT
CACAACAACAGAAGTATGTCTCAGAGATTAAGATAGTAAGCTGAAGATAAATGTTGTATCAGCTATTTCTTGTCTGCCAG
ATAAAAATTTGGCCATGCATGTCTTGTTCTTCAAAATTTCAACCCCTATGTCTTCTTGATGCTCTAGCACTAAATCATGC
ACCTTGCTAGTTCTGTATTTCCCCCCTTCTGTTTAACCCTTATCTTTCTTATAGTGGATCTTAACTGATGAGTTCATGAG
C-GACCATGTTGTAACATGTGCATTTGCTTGCATTCCTGCAGTGATCGTTTCCAAGATGGCCAGTGATGAGGATTCACTA
GATGATCAAAACCCTAGATCTTGGACCGTTAGCAACACTAGTACTGTGAGTTAATGCTACCTTTACTTTCAGAAAGGAAA
GAATGTACCATGCACCTAGCGTTTTGATGTTACTATTTATTATTTTTATTTTGATTTCTCAGATTAACAAGACGGAAGAA
GCATCCAGCATGTTCTCGGTCCAGGATCATCACCCACAAAGAGCAGTAGTGAACTTTTTAAAGGATGACAATACCACCAA
AACGATCCATGAGCAATGGCAAGCAAAAGCTAAGGTTGCCTCGTAGCCTATAAGCCGGTGTTATCCCGACTGAGCTTTCT
ATTATCCCTAAACTCTCCCATATGCCTCTAGTTAAATCATTTTCTGGCCACTTCTCATGCCAGAATTAATGTTCTTGACC
TTGTAAGGCCTTTTCTTGACCTTGTAAGGCCCTCCCCTTACGTTTCTCGTGCCGCCGGGTGTCTCCAACCTCACACTTTC
TCCCCCCTTCTATCCCTCCTGAGCTATCTCCATGCATATGTTGTCTAGCAATCTAGATGAGACATGAGAGATGATATTGG
AATAAAAGTCTGTGGTAAATTAAGTTTTTATTCCCATGTGAGTGGTACTATATTTTATGGCCTGATTTGTCCCTACAAAC
ACAAAATATAAGTGAACATATCGGTCAATCGCCTCTCATTTGAATATGGGTGTGTGTG--ATCTTGCAACTTGTGCAAAG
GAACGGCTTTTCACACCTAGCTAATTGAGCTTTTAATTCTTGGGGTGATCATGTGTGAGCTTG---CATATGCATGTGCG
TTCCCATGGATGTATGCATTAGAGGAGACAGACTGCAGGTTATCTTTTGTCTTGTTTATCAGGGCATATCAGGCGCGCAA
CATATACATGCAGGCTTTTCTAATCTTCTCGGGGGAAATCATTGCATTGCATTGCATTACCTGCATTTACATGCAGGCTT
TTCTAATCTTCCCGGGGGAAATCATTGCATTGCACTACGCCACTACCTGCATATAAATTCAGGCTTTCCTGCTGCAGGCT
TTTGTCTCTCCACATGTGGCTGTCAAACCGCTCGTGTGACACCACCAAATCATGTAATCTGATATCG-TATCCAAAATTT
CAGGGACCGCCTATCTTGTCAGGTTCTCAAAATAAAAATAAAAATTCCACAGTAGTTAAAAATCTAAACCGTTGAATGAG
GAATGGACGGCTGGATGGTCTTCTTCTTCCTCGAACGGTTTCCTCCCCACGTCCGAATCTGTTT----------------
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---------------------------GAACGCTCTAATTTGTTTGAAGAAAGACTCCTACGTCCT
>chr1B_1
TTGAAGTCATTCCTTTATCATGTCGCAAAGCCTTATAGTGGAACGACATTTGAAGAAAAGGTGGTCCTCACACTTGCAAA
GCGGGCATAATCCACAATTTGTCCAACCCCCGCTTGGCCAATCTATCGGCGGTCCGAATGCAATTTTTGATGGACAGTCA
ATCAAAGAATTTCACCTTCGGGGTGCCCAAGATTTCCAAACGGCGTCACTGATGACCGATCTAGTAGCTCTGAGGAATTG
AGCATGACCGATCTAGTAGCTCCAAGGAATTGAGCTATTAATTCCTCTATTAATTAAATATGTT-TTTGAGGTTGCTTTG
GCCATTGATAATAATAGTAATACTATATGATATAACACCTCTATTAATAATGGTTGCTCAGATGTGGCTAACAAGCTGAT
CCAATCATGCTAATTTCTCCATCCAAATATATAGGCCTAATACGCTTTTCGAGGTTGCCTTTGGCCATTGATAAGATTAA
TAATATATGGGATATATGATACAAAAATTTAGGAACTCCTTTTACATACAAATTTGACGGTATACTTCTGTAACATGCAT
GTCATATATTATTGTTCTAAATGATGATCAAAGACAACCTCAAAAAATGTATTAGACCATATATATTTGGATGGATTGTG
TACACTAATTTAATTATATTCTAAACACTATCGAGACAAAAAGATCGAGAGCAGGAAGAGAGAAAAGGACAGAGATTCCC
CTCCTGAAAGCCAAGCTAAAAGGGGCCACATG--TCCCCACCTCCAGGTCAAGGCAGGCCCTCTATACCAATCCATAAGA
TATCCCACTACCTTTTGTTTTTCCAGTATAAATCTGCGCCCAGGCGTCAGGTGAGCAACAAGGAGATGAGCCTTCTCTAC
CACTAGTAGTAGTACTACTACATCTCCGAAGAATCTACAGACATCTTCACCCCCAACTCGGCGGCAGGCAAGATCTAACG
CACTATCCATTTCCTTTCCTCCTCTCAAGGCTGTTGTTCTCCATGATGAAAGCCTCATTTCTTTACTGGATGTAGTAAGC
TAGGTCGCGGATGCTCTTGATCCCTTGTATTTTCTCACCACTACGTATGTCTTTGATGTAAAATGTAAGTTTTTAAAGAG
AGAAAGTTTATTAGTTATTTCTTGCCGATGTATAACTTTGTCAACGTCCATGTTTTTCCATGTTCTAACCTCTGTCTTTT
CACAATAACAGAAGTATGTCTCAGAGATTAAGATAGTAAGCTGAACTGCTGAA--GTATCAGCTATTTCTTGTCTGC-AG
ATAAAAATTTCGCCATGCATGGCTTGTTCTTCGAAATTCCAACCCCTATGTCTTCTCGATGCTCTAGCACTAAATCATGC
ACCTTGCTAGTTCTGTATTTCCCCCCTTCTGTTTAACCCTTATCTTTCTTATAGTGGATCTTAACTGATGAGTTCATGAA
-TGACCATGATGTAACATGCGCATTTGCTTGCATTCATGCAGTGATTGTTTCCAAGATGGCCAGTGATGAGGATTCACTA
GATGATCAAAACCCTAGATCTTGGACCGTTAGCAACACTAGTGTTGTGAGTTAATGCTACCTTTACTTTCAGAAAGGAAA
GAATGTACCATGCACCTAGCGTTTTGATGTTACTATTTATTCTTTTTATTTTGATTTCTCAGATTAACAAGACAGAAGAA
GCATCCAGCATGTTCTCGGTCCAGGATCATCACCCACAAAGAGAAGTAGTGAACTTCTTAAAGGATGACAATACCACCAA
AACGATCCATGAGCAATGGCAAGCAAAAGATAAGGTTGCCTCGTAGCCTATAAGCCGGTGTTATCCCGACTGAGCTTTCT
ATTATCCCTAAACTCTCCCATATGCCTTTAGTTAAATCATTTTCTGGCCACTCCTCATGCCAGAATTAATGTTCTTGACC
TTGTAAGGCCTTTTCTTGACCTTGTAAGGCCCTCCCCTTATGTTTCTCGTGCCGCAGGGTGTCTCCAACCTCACACTTTC
TCCCCCCTTCTATCCCTCCTGAGCTATCTCCATGCATATTTTGTCTAGCAATCTAGATGAGACATGAGAGATGATATTG-
AATAAAAGTCTGTGGTAAAATAAGTTTTTATTTCCATGTGAGTGCTACTATATTTTATGGCCTGATTTGTCCCTACAAAC
ACAAAATATAATTGAACATATTGATCAATCGCCTCTCATTTGAATATGGGTGAGTGTG--ATCTTGCAACTTGTGCAAAG
GAACGGCTTTTCACACCTAGCTAATTGAGCTTTTAATTCTTGGGGTGATCATGTGTGAGCTTG---TATATGCATCTGTG
TTCCCATGGATGTGTGCATGG--GGAGACAGAGTGCAGGTTATCTTTTGTCTTGTTTATCAGGGCATATCAGGCGTGCAA
CGTATATTCATAGGCTTTTCTAATCTTCTCCGGGGAAATCATTACATTGCA-----TTGACTGCATATACCTACAGGCTT
TTCTAATCTTCCCCGGGGAAATCATTGCATTGCACTACGCCACTACCTGCATATGAGTTCAGGCTTTCCTGCTGCAGACT
TTTGTATCTCCGCATGTGGCTGTCAAACTGCTCGTGTGACTTCACCAAATCAAGCAATCTGATATGGGTATCCAAAATTT
TGGGGACAGC-CTATTTGTCAGGTTCTTGAAAAAAAATAGGCGATAATTG--------AAAATCTAAACCATTGGATGAG
GAATGGACGGCTGGATGA---TCTTCTTCCTCTAACCGTTTCCTCCTCACCCCTGAATCCAGTGGTGCACATGCGCGAGC
CCTTCTCTGACGCCGGTCAGAACATCCCCGTCTCCGGTGAGATCCTGACACGGCCTCTCAAGGGTGGACGCTCCTTGCAG
CCGCTCGTCACGTTGGCCCCGTCTTTGGCCTCGATGAGTTCAAGCGACGTGTCTAAAATTTCCAGGCAGATGAGATTTAA
GCCCTGTTCGGCAGTCATCCAACTCCGTGGAGTGCACGGAGCGACCCTTCGGCCACTCCGAGAAAGCAGGCTGCGGCCCG
CTCCGCGCCGGAACGGAGCACTGCCGAACAGGGCGTTAATAAAAGCAAAAAAAAAAGTAATATCATTTGTACGATTAGTT
TTCTTGGTTCAGAAAAAAATATTGATTTATTTAAAGCAACTTTCTGCCTACGAATGGGCCCAAAATATAAAATATATGCA
TGCACATTTACATGTCAAAGTAGCAAATAGAAAAACTTATATTCTAGTTTTCAAAATAACAAATCAACTAGCCTTGTACG
AAACCCTCATGATAATTAAATAAAAAGGAACGGTCTAATTTGTTTGAAGAAAGACTCCTACGTC--
>SNPs
-------S---------------S-------------------S------S-----------------------------
----------------------------------S---------------S--------------------------S--
---------S---------------------------------------------S------------------------
------------------------------S----------------S--------S----------------------S
-----------------------S--------------------------------------------------------
------------------S------------------------------S------------------------------
-------------------------S-----------------------------S------------------------
------------------------------------------------------------------S-------------
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---------------------------S----------------------------------------------------
------------------------------------------------------------S---------------S---
----------S---------------------------------------------------------------------
---S----------------------------S---------------S-------------------------------
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------------------S-------------------------------------------------------------
--------------------S----------------S------------------------------------------
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------------------------S-------------------------------------------------------
S-----------------------------------S-------------------------------------------
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--S---------------S-----------------S-------------------------------------------
----------------------------------------S---------------------------S-----------
---------------------------------------S----------------------------------------
---------------------------S----------------------------------------------------
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-----------------------S--------------------------------------------------------
----------------------S-----------------------------------SS--------------------
--------------------------------------------------------S------SSS--------------
---------------------------S---------------------------------------------S------
-------------------------------------------SSS------------------S---------------
---S----------------------------------------------------------------------------
----------------------------------------------------------------------------S---
---------------------S------------------S----------S---------------S----S-------
------------------------------------S-------------------------------------------
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>forward_131
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-------------------------------GGTTGGGCAATCTATCGGCA-----------------------------
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>reverse_1800
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---------------------------------------GTCGTAGCCTATAAGCCGGT---------------------
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>forward_861
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------------------------------------------GGCCTCAGGTGAGCAACAT-------------------
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>reverse_2713
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------------------------------------------------------------------------CGAATGAG
GAATGGACGGCT--------------------------------------------------------------------
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