>input_sequence_68720
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----------ATGTCGGAGCCGGTGGTGGTTGTAGGCGGGTGGGCGAGCCCGTTCGTGACGCGAGTGTGCATCGCGCTCA
GGCTCAAGGGCGTGGAGTACGAGTTCCTCCAGGAAGCGGTGGGCAGGAAGAGCGAGCTGCTGCTCAGGTCCAACCCCGTG
TACAAGAAGATGCCCGTGCTCCTCCACGGCGGTCGCCCCGTCTGCGAGTCCCTGGTCATCCTGCAGTACGTCGACGAGGC
TTTCTCCGCTGCCGGGAAGCCCATCCTCCCAGCCGACCCCTATCGCCGCGCCGTCCACCGGTTCTGGGCAGAGTATGCCG
ACGCCAAGGTGAGCCAGCCATTCGATCGTGACCACTGGATCTGGAACGCAAGTTATTTTACTGTTCTGGTAATTGACCAT
GGCTATCGGTTCCGAGAGGTTGCAGCTCCATTCACCACTTCGGACATTGAGAGGCATGGTCGGCGGCGACAAGGCCGACG
CCGCGGAGCAGGTGTCCGCCGCGCTCCGGCAGCTCGAGGAGGCCTTCGTGGAGTGCAGCGGCGGGAAGCCCTACTTCGGT
GGGGATGACGTCGGCTTCCTGGACATCGTCGTTGGCTCCTACATCGGGTGGTTCGGAGCCGCGGAGAGGATCGCTGGGCT
TCCCGTCCTCGACGAGGCGAGAACGCCGCGGCTGGCGGCCTGGGCGGTGCGGTTCTGCGCGCACGAGGCCGTCGGGGACC
TCGTGCCCGACGCCGCCAGGCTCGTTGAGTTCGGCGAGGTGCTCCGCGCGGCGCTGGCGGCCAACGCTTCCTCCCGGCCG
TGA-----------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G200100
AATATTTTATATTCTCATAATTTGAAATGCTTGATCATTTAAAAAATATTTGCAACGATTTTTATAAAATCCTAAAGATT
TTTCAAAATTTCATGAACAAAGTTTAGTAAGAAACAACTAGCACCACCACACCTAGCTGTCACTACGGTGCCCAACAGCC
GCCGAGGCCCGACGTCGCCATGCCTGTCGGTAGCCACGAACCAAGCCCCATTGACCAGATCCAGATCAGGCAAGCCCATG
ACTCCTAGACGGACCAATTCCTGTCGGTTGCTGCTACCAAGGCAACACCACTAGACGTAAGCATGCACCACCAGCGCTGC
CATTGAGCAGAGCCACCACCGGAACTTCACTGCGCTTCGCTGCCAAGTACTCCTTCTAAAGAGAACCATGCCACCGCCAG
GGATACGGAGGCGGGCCTAGGGGAGGCCCCGCCACCACCGGCACTGCACGGGCTTCGCCCGACAGTGACTCGGCAGCGGC
AATGGAAGGGGAGGGAGAGGAGGGCTGGCGGTTGGGGGAGTTAGGGATCCCCCGTATCGCCTCGGGAAGGGATACGGGTT
GAAAGGGGATGATATAGATTTGAAGTTTTCTCAAAAAAAAATTGTTACCGTGTTAGAAAAA-TATATGCTTTGTCGTTCT
GGTGAGATGTTCAAATATTTTGCGTTGGCGAGTCAAATGCACCCTGGAACGCTAGTGGACATGTCAAGCCACGTGCACCA
TCACAACGCCCAACAACCACATTGCCCCTACTTCGGCTGCTGGTCCAATTTGGTTATTATTAATTCGATCACACACCGCA
CCAACTAGTACTCCCTTTACACC--------------------AAGATGTCTGGATCCGACGCCTCCGGCCGCGCTCCGA
TGGCGTCGATCGGTCTCTGACGCCGTTGACGGCGTTGCTT---ATCTTGCTGCTCCGGAAGACAAAGCAAAATTACCACT
GGTTCACAGTGG-TTCCACTAAGTGGGCCTATAAGGGCTTCTGTGAAGAAGCC-------------------------GC
GGCGGCGGCGATGTCGGAGCCGGTGGTGGTTGTAGGCGGGTGGGCGAGCCCGTTCGTGACGCGAGTGTGCATCGCGCTCA
GGCTCAAGGGCGTGGAGTACGAGTTCCTCCAGGAAGCGGTGGGCAGGAAGAGCGAGCTGCTGCTCAGGTCCAACCCCGTG
TACAAGAAGATGCCCGTGCTCCTCCACGGCGGTCGCCCCGTCTGCGAGTCCCTGGTCATCCTGCAGTACGTCGACGAGGC
TTTCTCCGCTGCCGGGAAGCCCATCCTCCCAGCCGACCCCTATCGCCGCGCCGTCCACCGGTTCTGGGCAGAGTATGCCG
ACGCCAAGGTGAGCCAGCCATTCGATCGTGACCACTGGATCTGGAACGCAAGTTATTTTACTGTTCTGGTAATTGACCAT
GGCTATCGGTTCCGAGAGGTTGCAGCTCCATTCACCACTTCGGACATTGAGAGGCATGGTCGGCGGCGACAAGGCCGACG
CCGCGGAGCAGGTGTCCGCCGCGCTCCGGCAGCTCGAGGAGGCCTTCGTGGAGTGCAGCGGCGGGAAGCCCTACTTCGGT
GGGGATGACGTCGGCTTCCTGGACATCGTCGTTGGCTCCTACATCGGGTGGTTCGGAGCCGCGGAGAGGATCGCTGGGCT
TCCCGTCCTCGACGAGGCGAGAACGCCGCGGCTGGCGGCCTGGGCGGTGCGGTTCTGCGCGCACGAGGCCGTCGGGGACC
TCGTGCCCGACGCCGCCAGGCTCGTTGAGTTCGGCGAGGTGCTCCGCGCGGCGCTGGCGGCCAACGCTTCCTCCCGGCCG
TGACGCGCCGCCGCGCCGGGG-CCTCGGCGATCGGATCCAGCTGCAATGCTCCAGTCTGGTTGGTTGGGTTCACTTGTCC
CTACAGACCCGCACATACGTCTCTGAATAAACAAGG--------------------------------------------
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GCAATCAGCGAATG-TTCGCCGGAGGTGCATGTTAAAACAAAAGTTTTCACGGCAATTTATGGCAATTTTTTT-------
-------CAAGTGAACTTGGGAAATTTCACATAAAATCCTCTGTTTGCAAGAAGTTGACATGTGTTTGTGAAGAAATTAT
CATGTGCTTTC-GAAAAATTTGCCATACAAAACATTCGCAATTGACATGTCCCACAACAAACGTTTGCTAGTCATTAGGG
TCCATAAACAATTGCCATACTCCGATGGTCACAATCCTAAATGGTTTAAGAATAAATTTTAATTCAGTGGTATTTTAAAT
GGTTTTATGTTTTATAGTTCGTTTCCGTTGTAACTTTTGCCTGTTTATAATATCAATACGCATTGTTGCGACGAGTTGCG
TTGGTATGCTTAACATTACGCACGGCCCCAAACTTCCACCCCTAGCCGCCAATGCAAGAGCGTTTCTACACTTCAACACG
CTGATGGCTCTATCCCTCTCCTTTTCTCCCTCCGGCGACCTCGTTGGCAGCAAGAAATGTGGGGACCCTTCCATCTCATT
TTCTTTTTCTTATGTCTTTTTCCTGAGGACGTCGACGAGATGATGGGGCAATGATGTGTTGGAATAAGATCTCTTCATTT
TTTTTTACCTCGACAAAGTCTGAGCTGGCACCGTGAAGAGCCTGTAAGAGTCTATGTCCCCATATATGTTGACTCCATTC
AAATCTTGGCGGTTGGTGTATTTAGTTGTTGGTGTAGCGGCTACGACATCTTTTTCAGTGTTCTTTTGGTCCAATTTCTC
CTCCCCTCTGAATTGGTGGCATGGAATTGCAAGTCTACATTGCTTTGCTAGTGGTGACACCCAATCAATGTTTGCTTCCA
CGATTTCTATATCTCGTCTCAAGA
>chr5A_583
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----------------------AAGTTTTCTTGGACAAAAAATGTTACCGTGTTAGAAAAAGTATATGATTTGTCGTTCT
GGTGACATGTCCA------------------GTCAAATCCACTCTGGAACGCTAGTGGACATGTCAAGCCACGTGCACCA
TCGCAACGCCCAACAACCACATTGGCCCTCCTTCGGCCGCTGGTCCAATTTGGTTATTCTTAATTCGATCACACACCGCA
CCAACC---ACTCCCTTTACACCAAGATTTCAAAAAAAAAAAAAAGATGGCTGGATCCGACGACTCCGGCCGCGCTCCGG
TGGCGTCGATCGGTCTCTGACGCCGTCGACGGCGTCGTTCAGAACCTTGCTGCTCCAGAAGACAAAGCAAAATTACCATT
GATTGACAGTGGTTTCCACTAAGTG--------------------------GCTTGTGTGTTAGAAGAACCAGCGGCGGC
GGCGGCGACGATGTCGGAGCCGGTGGTGGTCGTGGGCGGGTGGGCGAGCCCGTTCGTAACGCGAGTGTGCATCGCGCTCA
GGCTCAAGGGCGTGGAGTACGAGTTCCTCCAGGAAGCGGTGGGCAGGAAGAGCGAGCTGCTGCTCAGGTCCAACCCCGTC
TACAGGAAGATGCCCGTGCTGCTCCACGGCGGCCGCCCCGTCTGCGAGTCCCTGGTCATCGTGCAGTACGTCGACGAAGC
TTTCTCCGCCGCCGGGAAGCCCATTCTTCCGGCCGACCCCTACCGCCGCGCCGTCCACCGGTTCTGGGCAGAGTACGCCG
ACGCCAAGGTGAGCCAGCCATTCGATCGTGACCACTGGATCTGAAACGCGAGTTATTTTACTGTTCTGGTAATTGATCAT
GGCTATCTGTTCCGAGAGGTTGCAGCTCCATTCACCACTTCGGACACTGAGAGGTATGGTCGGCGGCGACAAGGCCGATG
CCGCGGAGCAGGTGTCCGCCGCGCTCCGGCAGCTCGAGGAGGCCTTCCTGGAGTGCAGCGGCGGGAAGCGCTACTTCGGT
GGGGATGACGTCGGCTTCCTGGACATCGTCGTTGGCTCCTACATCGGGTGGTTCGGAGCCGCGGAGAGGATCGCTGGGCT
TCCCGTCCTCGACGAGGCCAGAACGCCGCGGTTGGCGGCCTGGGCGGTGCGGTTCTGCGCGCACGACGCCGTCGGGGACC
TCGTGCCCGACGCCGCCAGGCTCGTTGAGTTCGGCGAGGTGCTCCGCGCGGCGCTGGCGGCCAACGCTTCCTCCCGGCCG
TGAGGCGCCGCCGTGCCGGGG-CCTCGGCGAGGGGATCCAGCTCCAAGGCTCCAGTCTGGTTGGTTGGGTTCACTTGTCC
CTACAGACCCGCACATACGTCTCTGAATAAACAAGGGTAATATTATTCAGCGAACTTTGCTAGACTTACAGACGCAAGCC
ACGGAAATTATTTACGGACTGAGCTGGACATGTTTAACTGGAAACTGGGGGCAGTGGGACCCATCCTTGAAATCAGCGGG
GGAGAGGGATTGGTCATTGGTTAGTGGGGTGCAGTCCGTAAGATTCATATGTATATTGCCCGTAAGTGTAGCATTTTTGA
TTATTCAGCGAATG-TTCGCCGGAGGTGCATGTTAAAACAGAAGTTTTCACGGCAATTTATGGCAATTTCTTT-------
-------CAAGTGAGCATGGGAAATTTCACATAAAATCCTCTGTTTGCAAGAAGTTGACATGTGTTTGTGAAGAAATTAT
CATGTGTTTTTCGAATAATTTACCATACAAAACATTCGCAACTGACATGTCCCACAATAGACCTTTGCTAGTTATTAGGG
TCCATAAACAATTGCCATACTCCGATGGGCACAATCTTAAATGGTTTAAGAATAAATATTAATTCAGTGGTATTTTAAAT
GGTTTTATGTTTTATATTTCGTTCGTGTCGTAACTTTTGCCTGTTTATAATATCAATACACATTGTTGCGACGAGTTGCG
TTGGTATGCTTAACATTACGCAAGGCCCCAAACTTCCACCCCTAACCGTCATTGTAAGAGTGTTTCTACACTTCAAC---
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>chr5B_680
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----------------------------------------ACTCTGGAACACTAATGGACATGTCAAGCCACGTGCGCCA
TCACAACGCCCAACAACCACTGT-----------------TGGTCCAATTTGGTTGTTCTTAATTCGATCACGCACCGCA
CCAACC---GCGCCCTTTACCCC--------------------AAGATGGATGGATCCGACAACTCCGGCCGCGCTCCGA
TGGCGTCGATCGGTCTCTGACGCCGTCGACGGCGTTGTTTCGAATCTTCCTGCTCCAGAAGACAAATCAAAATTACCGTT
GGTTTACGGTGG-TTCCACTAAGCTGGGTTATAAAAGTGAGTTAGTTGTGAGCTTGTGTGTTAGAAGAGCCGGCGGCGGC
GGCGGCGGCGATGTCGGAGCCGGTGGTGGTCGTGGGCGGGTGGGCGAGCCCGTTCGTGTCGCGAGTGTGCATCGCGCTCA
GGCTCAAGGGCGTGGAGTACGAGTTCCTCCAGGAAGCGGTGGGCAGGAAGAGCGAGCTGCTGCTCAGGTCCAACCCCGTG
TACAAGAAGATGCCCGTGCTCCTCCACGGCGGTCGCCCCGTCTGCGAGTCCCTGGTAATCCTGCAGTACGTCGACGAAGC
TTTCTCCGCCGCCGGGAAGCCCATCCTTCCGGCCGACCCCTACCACTGCGCCGTCCACCGGTTCTGGGCAGAGTATGCCG
ACTCCAAGGTGAGCCAGCCATTCGATCGTGACCACTGGATCTGGAACGCAAGTTATTTTACTGTTCTGGTAACTGATCAT
GGCTATCGGTCCCGGGAGGTTGCAGCTCCATTCACCACTTCGGACATTGAGAGGTATGGTCGGCGGCGACAAGGCTCATG
CCGCGGAGCAGGTGTCCGCCGCGCTCCGGCAGCTGGAGGAGGCCTTCGTGGAGTGCAGCTGCGGGAAGCCCTACTTCGGT
GGGGATGACGTCGGCTTCCTGGACATCGTCGTTGGCTCCTACATCGGGTGGTTCGGAGCCGCAGAGAGGATCGCTGGGCT
TCCCGTCCTCGACGAGGTCAGAACGCCGCGGCTGGCGGCCTGGGCGGTGCGGTTCTGCGCGCACGAAGCCGTCGGGGACC
TCGTGCCCGACGCCGCCAGGCTCGTTGAGTTCGGAGAGGTGCTCCGCGCGGCGCTGGCGGCCAACGCTTCCTCCCGGCCG
TGAGGCGCTGCCGCGCCGGGGGCCTCAGCGATCGGATCCAGCTCCAAGGCTCCAGTCTGGTTGGTTGGGTTCACTTGTCC
CTACATACCCGCACATACGTCTCTGAATAAATAATG--------------------------------------------
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TTATTCAGCGAACGTTTTGTCGGAGGTGCAAGTTATAACAAACATTTTTCATGTCAATTTATATGTTGGAAGCATTGACA
ATTCTTACAAGCGAACACAGGAATTTTCGCGCAAAATCCTCTGTTGAA----------------TTTGTGAAGAAATTGT
CACGTGCTTTT-GAAGAATTTGCCATACAAAACATTCACAATTT-CATGTCCCACGGCAAATGTTTGCTAGTTATTGGGG
TCCATAAACAATTGCCATACTCTGATGGTCACAATCTCAAATGGTTTAAGAACTCGAGGC----------TATTCTAAAT
TGTTTTATGTTTTACATTTCGTTGGCACCATAACTTCTGCCTATTTATAATATCAATATGCGCTACTACGACGAGTT---
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS---------SSS-S-----S--------------------------S-----------
-----S----S--SSSSSSSSSSSSSSSSSS-------S---S-------------------------------------
------------------------S----S-------S--------------------S---------------------
-----SSSS----------------------------------------S------------S-----------------
--------------------------S----------S------------------S---------------------S-
----S----------------------SS-----SS-SSSS-SS-SS-SSSS----------------------------
------------------------------S--S----------------------------------------------
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-----------------------------------------------------------------------------S--
---------S-----------------S--S-----------S-------------------------------------
----------------------------------------------------------------------------S---
------------------------------------------------------S-----------------------S-
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------------------S-----------------------------------------------S-------------
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---S---------------------------------------S---S--------------------------------
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SS-S-----------------------------------------------------------------S----------
----------------S---------------------------------------------------------------
----------S----S--------------------------------------------------------S-------
------------------------------------S--------------------S----------------------
----------------S------SS---S---------------------------------------------------
----------------------S---------------------S---S--S--S-----S----------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_220
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----------------------------------------CCAAGCCCCATTGACCAGAT--------------------
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>reverse_1888
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-----------------------------------------------TGCTCCAGTCTGGTTGGTTG-------------
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