>input_sequence_68704
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----------------------------------------------------------CCCTCCTTCCACTCGCTTGCCA
AGAAGCGCGAGGCAGAGAGAGAGAG---------------------------CGAGAGCAACCGCACG----GAGATGAA
GGCGGAGAAGGCAGCGGTGGCCGCGGCCGCCGGC---GGCGACGAGTGGCGGTGCCGGAAGCACCCCGCGGCGAGATCCG
GCGGCGGGGTGTGCCCGTACTGCCTCCGCGACCGGCTGCTGCGGCTCTGCCCCAACTGCGCTCGCGTGCGGCCCTGCCCC
TGCACCTGCGCCTCCCCGTCCTCCTCCTCCTCGGCGTCCGGCGACGCCGTCGGCCGGGTGCACAGCCTCATCGAGCGGGA
GCACCGGGTGGCGCGCTCGCGCTCCGTCGCCGCGTCATCCTCCGCCGCGATGGCCTCCGTTGCC------------GCCT
CCGGGAGGCGAAAGGCGAGGGTCTGGGGGTGGGCGCCGTTCTGGAAGTCCTCTGCCAAGGACGGGGGCGCGGCGGAGGAG
GACGAGGAGGAGGAGAGGCTGGGGCTGGCGAGGTCCAGCTCGGTCTCCGCGACGGCCGTGGAGGCGAAGGCGGTGGCGGC
CAAGGCGGCGGCGACCAAGGCGCGGTGGGGGTGGCACTTCCCGAGCCCCATGAAGGCGTTCCGGCACCGGAGGTCGTCGG
CGAGCATGCCGGAGCGGGGGTGAGATTCCTCGCCACCAGTGGGGAGATCTGTCTG----TTGCTTTTAGGAGGTGGCTAT
AGTATAATCAATTAACTATATGGGGGTTCTTCTTTTCCACTTTTGTGGCTCGCGTGCTAATGTGCTATGATGTTTAAGCT
AGATTAAAACT-GAAAGCCTGTG---------------------------------------------------------
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>chr6D_1_TraesCS6D01G250400
ATTTCTTCTTTTAGTACGTATTGCACAAGACCGACTAC---TACAAGTGATGCAGGTGAAGTGCACTCCTCGTACT----
---AATCTCTTTTTCTAGGGAATAC----AGTAGTAAGAGTTACTAGTACTAATATTAACACCTCGAAGGTGGTAATAAC
TAGTAATAAATCTC-AAAAAATGCAAAATGGTGGCCTAATCG-TTTTGACTTTGCCGGGCGCCCGAAGGCGAGACAACAC
GGCTCTGCGCCCCGACGCAGGCGATGCCGTTCGTCAACCACACGTGCAGAAGCGGACAGCACCTCGACGGCGGTACGCTG
GGCTGCGGCCGT---AGTCAGTCAGTCAGTAGCGCCCTGTGCGACGTGCGTGTAGAATA---GACGCGATACCTACGATT
CGCGCTACGAACCAGATCTGCGAGATTGCAACCGCTCT--------GCAGGTGCACTCCACACGGGCACCAAAGTTTCAT
TCAATAAATAATTAAAGTTAAACTCATTGAGAGAAATAAAGGAACAGCCGTCTCGGTCGCATCGTCATAAACCGACACGC
GGGCCCCGCGTAACTGACCCAAGCACGGCTCATTCCCGCCCCGCACGTGCGCGGGCAGCCTTATCTTTCGAGCACCCTCG
GGATCCTCTGCGGCCGACGACACAGCAGGTGCTCCTCGCCGTTGCTCAGAATCGGGCTGGAGATTTTTCTAGCCAGATTT
GTGCTACAAACA--------------------------------------------------------------------
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-----------------------------------------------------------------------------AAA
CAAATCAGAAGCTGTTTCTTTGCTCAGTTGTATGCTCC--CTACACGTCCTGAATGATGCATTCTCATGCGGTGGTTCTA
GGCTACAGC-AGTTGAGGTGCAACCGCACAAGATCCCGCAGCAACTACTGCCCAGCTGTACCCAATGGCACCCTCGTGAA
TAACCGCAAGCTACGTGCCTTGTCTCCGTGCCCGAAAAACCACACGCCGTTAAGCCCCGCCGGGAATTGCCTCCTTTATT
ACACACTCCGGCGCGCCCCTTCCCGCAGCGACGCTGTGAGTTCGTATCCGTAACGCCCCCCTCCTTCCACTCGCTTGCCA
AGAAGCGCGAGGCAGAGAGAGAGAG---------------------------CGAGAGCAACCGCACG----GAGATGAA
GGCGGAGAAGGCAGCGGTGGCCGCGGCCGCCGGC---GGCGACGAGTGGCGGTGCCGGAAGCACCCCGCGGCGAGATCCG
GCGGCGGGGTGTGCCCGTACTGCCTCCGCGACCGGCTGCTGCGGCTCTGCCCCAACTGCGCTCGCGTGCGGCCCTGCCCC
TGCACCTGCGCCTCCCCGTCCTCCTCCTCCTCGGCGTCCGGCGACGCCGTCGGCCGGGTGCACAGCCTCATCGAGCGGGA
GCACCGGGTGGCGCGCTCGCGCTCCGTCGCCGCGTCATCCTCCGCCGCGATGGCCTCCGTTGCC------------GCCT
CCGGGAGGCGAAAGGCGAGGGTCTGGGGGTGGGCGCCGTTCTGGAAGTCCTCTGCCAAGGACGGGGGCGCGGCGGAGGAG
GACGAGGAGGAGGAGAGGCTGGGGCTGGCGAGGTCCAGCTCGGTCTCCGCGACGGCCGTGGAGGCGAAGGCGGTGGCGGC
CAAGGCGGCGGCGACCAAGGCGCGGTGGGGGTGGCACTTCCCGAGCCCCATGAAGGCGTTCCGGCACCGGAGGTCGTCGG
CGAGCATGCCGGAGCGGGGGTGAGATTCCTCGCCACCAGTGGGGAGATCTGTCTG----TTGCTTTTAGGAGGTGGCTAT
AGTATAATCAATTAACTATATGGGGGTTCTTCTTTTCCACTTTTGTGGCTCGCGTGCTAATGTGCTATGATGTTTAAGCT
AGATTAAAACT-GAAAGCCTGTGATTTGGGCGCAACGCGCTCAATTACCCTCTGGGCGGCGTCATTTCCTCCCTGCTTCT
GTTGTCCCTTGGTGTCGTGTCTGTACACTTACTACTCCACCGTGTAGTACCATC-AAATTGGACATTTTAAGCTCCCCGA
TTTGATCTGCGCTACTTTCTTTCCAGCACCATCTGTGAATCTGCAATCTCGTTGCCTTGCATCCTTGATTGT-TTTTTTT
TTTGGTATTCAGGATAAAAATTAGAAATCCTAGGCATGTGAGACAGTTAAAT------------------CGACATCGAT
CAGCAGTTA---AGCACGACGGCACCACTATCATTAGCGTGTCTAGGAAAGGTGAAAAGCACCAGTGCGGCGGTGTGTTC
ATTGCTCAATTTATCTAGAGCTTTTGATGTCATGTATGGAGTGGGGGTACTAGGTCTAGGTGAGTAGTACGTGACGGGAT
AGCAGCTTGTGTGTCGTGCACACTGGTCTCGTCGTGCTGCTTTGGGTGGAGCAGGTTCAGGACTAGGAATA-GGCGGCTC
GAGCGCAGTGTCCTCGTCTCGCCGACATGTGGGCCCGTGCAGCACACGCTCGCCTACGTTGCAAGTGGTGAAGGAGAGGA
CCCTTCGCTC--TACTACCTGGTCTAGTGCGCTGGCCCTGTCGCCCGCCGCTGGCTGCACCCGCTGCCTCGACGGCAAAC
GCAGCGCATTGAGCAGTGAGCTCTCCCCTACCCTTCTTCACGTTGTGGTCTAGTACTGGTTCACCGCGGGCTGATGTTTC
AACTCCCGTCGAAATCATTTGGAGCTCACTGTTTGCACCGATGAGGTAATCATTGCCCAACAGCTCAAGCTTTGTTCGTG
GAATCTTTCGGAGAAGATTGCCCTC--TCCCGAAAGGAAAATGTCTCGCCTCGTCACTACTACTAGTAGAGTACTGCAGT
ATTTGAGCTGTTCACCGACCAAGAATAAATCATCATACAGGGAAACTGCTGTAGAGATAAAATGTAGTAGGGTTAAGTGA
GTCAATATCTG
>chr6A_1
ATTTCTTCTTTTAGT----ATTGCACAAGACCGACTAGTAGTACAAGTGATGCA---GAAGTGCACTCCTCGTACTTACT
ACTAATCTCTTTTTTTAGAGAATAC----AGTAAGAGT------TACTACTAATCTTAACACCTCGAAGGTG--------
--GTAATAAATCTC-AAAAAATGCAGAATGGTCGCCTAAATCCTTTTGACTTTGCCGGGCGCCCGAAGGCGAGACAACAC
GGCTCTGCGCCCCGACACAGGCGACGCCGTTCGTCAACCACACGTGCAGAAGCGGACAGCACCTCGACGGCGATACGCTG
CGCTGCCCCGCTCC------------------------------CGTGCGTGTAGAATACTAGACGCGATAACTACGATC
CGCGCAACGAACCAGATCTGCGAGATTGCAACCGGTGACTCTGCAGGCAGGTGCACTCCACACGGGCACCAAAGTTCCAT
TTAATAATTAATTAATTA-------ATCGAGAGAAATAAAGGAACAGCCGTCTCGGTCGCATCGTCGTAAACCGACAGGC
GGGCCCATCGTAACTGACCCCAGCACGGCTCATTCCCGCCCCGCACGTGCGCGGGCAGCCTTATCTTTCGAGCCCGAGCG
GGATCCTCTGCGGCCGGCGACACCGTAGGTGCTCCTCGCCGTTGCTCAGAATCAGAGTGGAGATTTGTGCTAGTACTCCT
CCGGTCATTTTTATTCTGCATATTAGAGATTTGATCATATTTATATGAAAAATTATCAACATCTGCCATGCTAAAGTTAT
ACAATACTATGAAACTTTAAGTCATGACACATCTTTTTATATTGATTTCAGATTGTGAATATTGATACTTTTTCTTATAA
AATTGGTCAAACTTTACGAGACTTGACTTCAGTCAAATCTTATATGCGAACTAAAAAGGCCCGGAGGAAGGGAGTACAAA
CAAATCGGAAGCTGATTCTTTGCTCAGTCAGATGTGTGATCTACACGTCCTGAATGATGCGTTGTCATACGGTTCTAGTA
GACTATAGCAAGTTGAGGTGCAACCGCAGAAGATCCCGCGGCAACCGCTGCCCAGCTGTACCCGATGGCACCTTCGTGAA
TAACCGCGAGCTACGTGCCTTCTCTCCGTGCCCGGAAAACCACACGCCGTTAAGCCCCGCCGG----TGCCTCCTTTATT
ACACACTCCGG-----------------CGACGCTGTGAGTTCGTATCCGTAACGCCCCCCTCCTTCCACTCTCTTGCCA
AGAAGCGCGAGGCAGAGAGAGAGAGAGAGAGAGAGAGCGAGCGAGTCATCAGCGAGAGCAACCGCACGGAGGGAGATGAA
GGCGGAGAAGGCAGCGGTGGCCGCGGCCGCCGTCGGGGGCGACGAGTGGCGGTGCCGGAAGCACCCCGCGGCGAGATCCG
GCGGCGGGGTGTGCCCGTACTGCCTCCGCGACCGGCTGCTGCGGCTCTGCCCCAACTGCGCGCGCGTGCGGCCCTGCCCC
TGCACCTGCGCCTCCCCATCCTCCTCCTCCTCGGCGTCCGGCGACGCCGTCGGCCGGGTGCACAGCCTCATCGAGCGGGA
GCACCGGGTGGCGCGCTCGCGCTCCGTCGCCGCGTCCTCCTCCGCCGCGATGGCCTCCGTCGCCGCGGCCGCCTCCGCCT
CCGGGAGGCGAAAGGCGAGGGTCTGGGGGTGGGCGCCGTTCTGGAGGTCCTCTGCCAAGGACGGGAGCGCGGCGGAGGAG
GAGGACGAGGAGGAGAGGCTGGGGCTGGCGAGGTCCAGCTCGGTCTCGGCGACGGCCGTGGAGGCCAAGGCGGTGGCGGC
CAAGGCGGCGGCGACCAAGGCGCGGTGGGGGTGGCACTTCCCGAGCCCCATGAAGGCGTTCCGGCACCGGAGGTCGTCGG
CGAGCATGCCGGAGCGGGGGTGAGATTCCTCGCCACCAGTGGGGGATCTGTCTCTTGCTTTCCTTTTAGGAAGTGGTTAT
AATATAATCAATTAACTATATGGGGGTTCTTCTTTTCCACTTTTGTGGCTCGCGTGCTAATGTGATACGATGTTTAAGCT
AGATTAAAAACCGAAAGCCTGTGATCTGGGCGCAATGCGCTCAATTACCCTCTGGGCGGCGTCATTTCCTCCTTGCTTTT
GTTGTCCCTCGGTGTCGTGTCTGTACACTTGCTGCTCCACCGTGTAGTACCATC-TAATTGGACATTTTAAGCTCCCCGA
TTTGATCTGCGCTACCTTCTTTCCAGCACCATTTGTGAATCTGCAATTTCGTTGCATTGCATCCTTGATTGTCTTTTTTT
TTCGGTATTCAGGATAAAAATTAGAAAACCCAGGCCTGTGAGACAGTTAAACACGATGGTACTACCAGCACGACATCGAT
CAGCAGTTAAGCAGCACGACGGCACCACTATCATTAGCGTCGATC-GAAAGGTGAAAAGCACCGGTGCGGCGGC--GTTC
ATTGCTCCATTTATCTAGAGCTTTTCATGTTGTGTA-------------CTAGGC------GATTAGTACGTGACGGGAT
AGCAGCTTGTGTGTCGTACACACTGGTCTAGTCGTGCTGCTTTGGGTGGAGCAGGTTCAGGACTAGGAATAGGGCGGCTC
GAGCGCACTGTCCTCGTCTCGCCGACATGTGGGCCCGTGCAGCACACGCTCGCCTACGTTGCAAGTGGTGAAGGAGAGGG
CCCTTCGCTCAGTACTGCCTGGTCTAGTGCACTGGCCCTGTCGCCCGCCCG---------CCGCTGCCTCGACGGCAAAC
GCAGCGCATTGAGCAGTGAGCTCT--------CTTCTTCACGTTGTGGTCTAGTACAGGTTCACCGCGGGCTGTTGTTTC
AACTCCCGTCGAAATGATTTCGAGCTCACTATTTGCGCCGATTAGGTAATCATTGCCCAGCAGTTCAAGCTTTGTTCGTG
GAATCTTTCGGAGA------------------------------------------------------------------
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>chr6B_21
--------------------TTGCACAAGACCGACTTCAAGA------GATGCAGGTGAGGTGCACTCCTCGTACT----
---AATCTCTTTTTTTAAGGGAATACAGTAGTAAGATT------TACTACTAATATTAACACCTTGAAGCTG--------
--GTAACAGAACTCAAAAAAATGCAAAATGGTCGCCTAATCG-TTTTGACTTTGCCGGGCGCCCGAAGGCGAGACAACAC
GGCTCTGCGCCCCGACACAGGCGACGCCGTTCGTCAACCACACGTGCAGAAGCGGACAGCACCTCGACGGCGATACGCTG
GGCTGCGTCCGGGTCAGTCAGTCAGTCAGTAGCGCCCTGTGCGACGTGCGTGTAGAATA---GACGCGATACCTACGATT
CGCGCTGCGAACCAGATCCGCGAGACTGCAACCGGCCT--------GCAGGTGCACTCCACACGGGCACCAAAGTTTCAT
TTAATAAATAATTAATTA-------ATCGAGAGAAATAAAGGAACATCCGTCTCGGTCGCATCGTCATAAACCGACACGC
GGGCCCCGCGTAACTGACCCAAGCACGGCTCATTCCCGCCCCGCACGTGCGCGGGCAGCCTTATCTTTCGAGCACCCTCG
GGATCCTCTGCGGCCGACGACACAGTAGGTGCTCCTCGCTGTTGCTCAGAGTCGGACTGGAGATCTGTCAAGCCAGATTT
GCGCTACAAATA--------------------------------------------------------------------
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-----------------------------------------------------------------------------AAA
CAAATCGGAAGCTGTTTCTTTGCTCAGATGTACGCGC--TCTACACGTCGTGAATGATGCATTCTCATACGGTGGTTCTA
GGCTACAGC-AGTTGAGGTGCAACCGCACAAGATCCCGCGGCAACCACTGCCCAGCTGTACCCGATGGCACCCTCGTGAA
TAACCGCAAGCTACGTGCCTTCTCTCCGTGCCCGAAAAACCACACGTCGTTAAGCCCCGCCGG----TGCCTCCTTTATT
ACACACTCCGGCGCGCCCCTTCCCGCAGCGACGCTGTGAGTTCGTATTCGTAACGCCCCCCTCCTTCCACTC----GCCA
AGAAGCGCGAGGCAGAGAGAGAGAGAGAGCGGGCG---------------AGCGAGAGCAACCGCACG------GATGAA
GGCGGAGAAGGCAGCGGTGGCCGCGGACGCCGTCGGGGGCGACGAGTGGCGGTGCCGGAAGCACCCCGCGGCGAGATCCG
GCGGCGGGGTGTGCCCGTACTGCCTCCGCGACCGGCTGCTGCGGCTCTGCCCCAACTGCGCGCGGGTGCGGCCCTGCCCC
TGCACGTGCGCCTCCCCATCCTCCTCCTCCTCGGCGTCCGGCGACGCCGTCGGCCGGGTGCACAGCCTCATCGAGCGGGA
GCACCGGGTGGCGCGCTCGCGGTCCGTCGCCGCGTCCTCCTCCGCCACGATGGCCTCCGTCGCG------------GCCT
CCGGGAGGCGAAAGGCGAGGGTCTGGGGGTGGGCGCCGTTCTGGAAGTCCTCTGCCAAGGACGGGGGCGCGGCGGAGGAG
GAGGACGAGGAGGAGAGGCTGGGGCTGGCGAGGTCCAGCTCGGTCTCCGCGACGGCCGTGGAGGCGAAGGCGGTGGCGGC
CAAGGCGGCGGCGACGAAGGCGCGGTGGGGGTGGCACTTCCCGAGCCCGATGAAGGCGTTCGGGCACCGGAGGTCGTCGG
CGAGCATGCCGGAGCGGGGGTGAGATTCCTCACCACCAGTGGGGGGATCTGTCTG----TTGCTTTTAGGAGGTGGTTAT
AATATAATCAATTAACTATATGGGGGTTCTTCTTTTCCACTTTTGTGGCTCGCGTGCTAATGTGCTATGATGTTTAAGCT
AGATTAAAACT-GAAAGCCTGTGATTTGGGCGCAATGCGCTCAATTACCCTTTGGGCGGCGTCATTTCCTCCCTGCTTTT
GTTGTCCCTTGGTGTTGTGTCTGTACACTTACTGCTCCACCGTGTAGTACCATCAAAATTGGACATTTTAAGCTCCC--A
TTTGATCTGCGCTACTTCCTTGAA------------------------------------------------------TT
TTTGGTATTCAGGATAAAAATTAGAAATCCCAGGCATGTGAGACAGTTAAACACGATGGTAC---CAGCACAACATCGAA
CAGCAGTTA---AGCACGACGGCACCACTATCATTAGCGTGTATAGGAAAGGTGAAAAGCACCAGTGCGGCGGT--GTTC
ATTGCTCCATTTATCTAGAGCTTTTGATGTTATGTATGGAGTGGGGGTACTAGGT------GAGTAGTACGTGACGGGAT
AGCAGCTTGTGTGTCGTGCACACTGGTCTAGTCGTGCTGCTTTGGGTGGAGCAGGTTCAGGACTAGGAATAGG-CGGCTC
GAGCGCAGTGTCCTCGTCTCGCCGACATGTGGGCCCGGGCAGCACACGCTCGCCTACGTTGCAAGTGGTGAAGGAGAGGA
CCCTTCGCTC--TACTACCTGGTCTAGTGCACTGGCCCTGTCGCCCGCCGCTGGCTGCACCCGCTGCCTCGACGGCAAAC
GCAGCGCATTGAGCTGTGAGC-----------------------------------TGGTTCACCGCGGGCTGGTGTTTC
AACTCCCGTCGAAATCATTTGGAGCTCACTGTTTGCACCGATGAGGTAATCATTGCTCGACAGCTCAAGCTTTGTTCGTG
GAATCTTTCGGAGAAGATTGCACTTCTTCCAGAAACGAAAATGTCTCGCTTCGTCACCACTAC-------------CAGT
ATTTGAGCTGTTCACCGACCAAGAATAAATCATCATACAGGGAAACTGCTGTAGAGATAAAATGTAGTAGGATTAAGTGA
GTCAATATCTG
>SNPs
---------------SSSS-------------------------------------------------------------
--------------S------------------SS-SSSSSSSS--S-------------------------SSSSSSSS
SS------------------------------S-----------------------------------------------
----------------S-------S-----------------------------------------------S-------
-------S------------------------------------------------------------------------
----------------------------------S---------------------------------------------
-S-------------SSSSSSSSSS--S----------------------------------------------------
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-------------------------S-----------------------------S----------S--S----------
-S--------S---------------------------------------------------------------------
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------S----------------------------S-S------------------------------S-----------
---------------------------------------S-----S-----------------S----------------
---------------------S-----------------------------------------SSSS-------------
------------------------------------------------------------------------S-------
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--------------------------------S-----------------------------------------------
-------------------------------------------------------------S------------------
-----------------S--------------------------------------------------------------
------------------------------------S-----------------------S-------------------
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--S--S--------------------------------------------------------------------------
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--------------------------------------------S-------------------------------S---
-S------------------------------------------------------------------------------
-----------------------------------S------------------------------------------S-
---------------------------------S----------------------------------------------
--------------------------------S--------------S-------S------------------------
------------------------------S--------------------S----------------------------
------------------------------------------S-------------------------------SS----
-------S----------------------S------------------------SSSSSS-------------------
-----------------------------S--------------------------------------------------
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------------------------------S-------------------------------------------------
------------------------SSSSSSSS-----------------------------------------S------
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---------------------S--S-----S----S-------------S-------S-----SSSSSSSSSSSSS----
-----------------------------------------------------------------------S--------
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>forward_1086
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--------------------------CACAAGATCCCGCAGCAACT----------------------------------
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>reverse_2288
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-----------------------------------------------CTCGTTGCCTTGCATCCTTG-------------
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