>input_sequence_68685
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------------------------------------------------------------AGTAGCTCTTTCTAAAGACA
CATCTGAACTGCCTCAATTCTAATCGAATTGATTATCAATATCCAAA-AGA-CCCACACGTATGCTCTTTTCCCAAGATT
CGTTCATGCATGTTCATATTGTCATTTCAGCGTAGCAGCATTTGCCAACCAGCATCTAGTCCAGTCCAAACATTTTTAAT
TGTCTTTTTTATA-TTTCATTTCATCAAGAGCTATGCACATGCAGAGCAAACCACCAAACGCACAGCCCATCC-------
------------CCTGACCCCCTCTCCTCCTCCCTCTTTATATACCACACGCGAACACGAGAGCGGTTGAGAAAACCAGA
AAACCCAA-CGAGCTGAGCCTACTGTACTGCCTCTGCCTGCAGTCCTGCGCCAACCAAGAAAGCAAAGCCCCAGTTCAAA
AAAAGAAAAAGAAAGCAAA-GCCCAATCAAGCAGAAGGAGAAGAGGAAGAATGGGGGAGGCGCCGTGCAGCGTGGTGGCC
GCGCCGCGCCGTTCCCCGGCGCGCTTCCGCCTGCCACGCCACGGGCTGCGCCGCAAGGTCCACGTCGTCCGTCTCGGGAA
CGGCGGTGCCGGCGCCGGCGCGCGGGCTGGCGGGGTCCGCCGCCTCTGCGGCCTCCGGCGTCGGATCAAGCTCCGGTGGT
TCCGGAGCACCATGTGGCGCCTGGCCGAGCTCTGCGTGGCGGTGCTGTCGGGCCCCCCGGGGACGGCCGACGCCCCGTCG
TCGTGGACCGGCGTGGAGCCGTGCTTCGCCGCGCCCTTCCTGCCGGCCGCGCTGGTGAGGCGCGCGGGGCAGGAGTAG--
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>chr2B_1_TraesCS2B01G332500
AAATAAAAATATATTTGCCTCTACAACTGCAGA--GCTATTTAATTTCTGCAGAG--GCACGAAAGGTTGAAGCCTGATA
CATCCAAGCAGCCACATTTTCTTCTTAAGGCTGGTTGTAATGGGAGTATCATATACTAGTATCATGCATATGATACTAGT
GTATGATACTACATCTGTAATGCAAAGTATCATATGTTGGTATCATAGAGTACTACATTTATTGGCATGCATGACACAAA
GTAGCACATCATTTAATATGATACGGTATCATGATATGATACTCAAACATCTCTTTCTTCATTTAATTCTATGTCATCTC
ATTAAAATTGCTTAGTTGGCATGCATGATACTACGTATGATACTATCATTACGGTCAGCCTAAGAAAAGAAACTGAGGTG
TGGTCGTACAAAAGGAAAATAAAAGACTTAATGCATGCACATGGTCCGTTACTC-TTTTTTAAGCAGCTTTTCGTTTCTT
TCTTTTCTCCCTTGTTCCATTTCACCTACCGTGAGCAT--GCATATGGTCTGTCCTGACAAACGTGTTTGAACCACTACC
AGTTGCCTGGACGTGTCAAGCGTACGGTGAGCAAGCATGAAGCATCTGATCGACAACTGAAAACAAATGTACTGCTTTCT
GGA---TATTAATGTTTTAGCTTCGAGCTTTACCTGAACTGTACGCTACACAAACAGTAC---AGTACTGCTTAATTGGG
ATAAGTGTGGCTTTTTAGTTTAAATACGTTTGGCTATTCCACACTCCATGCCATCCTCAAGCACTCTTAACTAAAATCTA
ACATATGAGACTAGAACAAATGCAATTAGGAAGCCAACTTTTGTAGGAGAATATGGTTCAGCTCTACGGCTCTACCAACA
ATTATGAGCTAGTACAAACTAGTGTAATACTTATCAATATAATCGGACAGGTGCGT---AATAAGAATTACCAAAAAAAG
CAAAGAGAGGCAGGTATGTATAAAGTCACCTTCCGGTGAAACTCAATGCAATTGTC----AGTAGCTCTTTCTAAAGACA
CATCTGAACTGCCTCAATTCTAATCGAATTGATTATCAATATCCAAA-AGA-CCCACACGTATGCTCTTTTCCCAAGATT
CGTTCATGCATGTTCATATTGTCATTTCAGCGTAGCAGCATTTGCCAACCAGCATCTAGTCCAGTCCAAACATTTTTAAT
TGTCTTTTTTATA-TTTCATTTCATCAAGAGCTATGCACATGCAGAGCAAACCACCAAACGCACAGCCCATCC-------
------------CCTGACCCCCTCTCCTCCTCCCTCTTTATATACCACACGCGAACACGAGAGCGGTTGAGAAAACCAGA
AAACCCAA-CGAGCTGAGCCTACTGTACTGCCTCTGCCTGCAGTCCTGCGCCAACCAAGAAAGCAAAGCCCCAGTTCAAA
AAAAGAAAAAGAAAGCAAA-GCCCAATCAAGCAGAAGGAGAAGAGGAAGAATGGGGGAGGCGCCGTGCAGCGTGGTGGCC
GCGCCGCGCCGTTCCCCGGCGCGCTTCCGCCTGCCACGCCACGGGCTGCGCCGCAAGGTCCACGTCGTCCGTCTCGGGAA
CGGCGGTGCCGGCGCCGGCGCGCGGGCTGGCGGGGTCCGCCGCCTCTGCGGCCTCCGGCGTCGGATCAAGCTCCGGTGGT
TCCGGAGCACCATGTGGCGCCTGGCCGAGCTCTGCGTGGCGGTGCTGTCGGGCCCCCCGGGGACGGCCGACGCCCCGTCG
TCGTGGACCGGCGTGGAGCCGTGCTTCGCCGCGCCCTTCCTGCCGGCCGCGCTGGTGAGGCGCGCGGGGCAGGAGTAGCT
-AGCCTAGCTGGTGACGGTGCTACCCTGCGA------TCATGAAGACATCAGCACTAATGTATATACCACTACTCACTAC
TGCTCAATGGAGATTGCAGAAGTAGATTCAT---ATGTAACGATTTCTTTTAACCGCGGCTCAAGCGATTCGTTGATGTC
TGAAAATCTGGAGATTGCATTGCTTACATTCCCCCTGCTCTTTCTCTGGATTTCCTTTAGGTCTCTTCTTTTTAAGAT--
TT-----TTTTCTTCTTCCAAAGCAGAGGCAAGTTTGGTGCTGTATGATAGTACTGTGCTATAGCAATTCCAA-------
TCATGTTGGGAGTACAAACCATAGTTTGCTTGTGATCTA---GTGGACTTGAGTAGTACTAGTATATTTGTACTACTGCG
AAGCGATAAGTGATCCGTGATTCCGTGCCCGGCCGATATTCTCGGAGGATTATGTTGAGAGTTTGCTCCATGCTCACCAA
TAATGCCG--------GAGACTACAAGCAA--------AGCAAGGGTTGCCGAAATTCCGTGATCGTAAACTGCAAGCAA
AA-TAGTCGGCAAAGTTGTTGCAGAAATCCCATGTTCTGGTACACGGCACACCGACCGATCCGCCATCGGCGCCGGCCTC
CATTCTGCACAGTACAGTCTGTGCATGTGTGTTTGGCAGGCAGAGGCAGGAGTGATGTCACGCCCGTCTCTCGCAGAAAA
AAGG----------AAAAGGAAAGGATTGAAGTCGGGCAG-------------------------TGAACGAAGCCGAGC
CAACAGG----------------------------------AGATAGACGAGTTATCGGGTGGAGCACGCATGCGGCATG
TTGCATTGTTGTCGCCATGAATGCCAGGATAGGGATAGGGATTTCCTAGGGATTAGGGAGAGGTGCCCTGCCCGCCTTGC
ACTGCCATGTGCAGTTGTGCACCGCCCTTCTCTGCTGCTTGCCAATGCTAATGCT---CGGCCGGGGTGGGCAGGGCA--
-TGCATGATGCGTCCTCATCGACGCCAGCCAAAACCTACTACCCTCATCACGGGGCCGGCCGTTGCATCCGCCCAGG
>chr2A_18
-----------------CCTCTACAACTGCAAAACGCTACTTAATTTCTGCAGAGAGGCACGAAAGGGTGAAGCCTGATA
CATCCAAGCAGCCACATTTTCTTCTTAAGT--------------------------------------------------
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-----------------------------------------------------------------AAAGAAAATGAGTTG
TGGTCGTACAAAAGGAAAATAAAAGACTTAATGCATGCACATGGTCCGTTACAC-TTTTTTAGCAGCTTTTTCGTTTCTT
TCTTTTCTCCCTTGTTCCATTTCACCTACCGTGAGCATGAGCATATGGTCAGTACTGACAAACGTGTTTGAACCACTACT
TGTTGCCTGGACGTGTCAAGTGTACGGTGAGCAAGCATGAAGCATCTGATCGACAACTGAAAACTAATGTACTGCTTTCT
GGATATTATTAATGTTT--GCTTCGAGCTTTACCTGAACTGTACGCTACACAAGCAGTACAGTAGTACTACTTAATTTGG
ATAAGTGTGGCTTTTCAGTTTAAATACGTTTGGCTATTCCACACTACATGCCATCCTCAAGCACTCTTAATTAAAATCTA
ACATGTGAGGCTAGAACAAATGCAATTAGGAAGCCAACTTTTCTAGGAGAATATGGTTCAGCTCTATGGCTCTACCAACA
ATTATGAGCTAGTACCAACTAGTGTAATACTTATCAATATAATCGGACATGTGTGTAATTACAAAAAAT---AAAAAAAA
CAAAGAGAGGCAGGTATGTATAAAGTCACCTTCTGGTGAAACTCAGTACAATTATCA----GTAGCTCTTTTCAAAGACA
CATCTGAACTGCCTCAATTCTAATCGAATTGATTACCAATATCCCAAGAGA-CCCACACGTATGTTCTTTTCCCAAGATT
CGTTCATGCATGTTCATATTGTCATTTCAGCGTAACAGCATTTGCCAACAAGCATCTTAATATAGTACACTTT-------
------------------ATTTCATCAAGAGCTATGCACATGCAGAGCAAGTCACCAAACGCACAGCCCATCATCCCCTG
ATCCCCTCTCCTCCTCCCG------------CCCTCTTTATATACCACACGCCAACACGAGAGGGGCCGAGGAAAACAGA
AACCACGGTCGAGCTGAGGCTACTGTACTGCCTCTGCCTGCACCAACC--------------------------------
--------AAGAAAGCAAAAGCCCAATCAAGAAGGA---------GAAGAATGGGGGAGGCGCCGTGCAGCGTGGTGGC-
--GCCGCGCCGTTCCCCGGCGCGCTTCCGCCTGCCGCGCCACGGGCTGCGCCGCAAGGTCCACGTCGTCCGGCTCGGGAA
CGGCGGTGACGGTGCCGGCGCACGGGCTGGCGGGGTCCGCGGCCTCTGCGGCCTCCGGCGTCGGATCAAGCTCCGATGGT
TCCGCAGCGCCATGTGGCGCCTGGCCGAGCTCTGCGTGGCGGTGCTGTCGGGGCCCCCGGGGACGGCCGACGCCCCGCCG
TCGTGGACCGGCGTGGAGCCGTGCTTCGCCGCGCCCTTCCTGCCGGCCGCGCTGGTGAGGCGCGCGGGGCAGGAGTAGCC
-AGCCTAGCTGGTGACGGTGCTGCCCTGTGACTGTGGTCATGAAGACAACAGCACTAATGTATATA-CACTACTCACTAC
TGCTCAATGGAGA-------AGTAGATTGATTATATGTAACGAA-TTTTTTAACCGCGACTCAAGCGATTTGTTGATGTC
TGGAAATCTGAAGATTGCATTGCT-ACATTTCA--------------------------------TTCTTTTTAAGACCC
TT-----TTTTTTGCTTCCAAAGCAGAGGCAAGTTTGGTGCTGTATGGTACGACTGTGCTATAGCAATTCCAAATTCCAA
TCATGTTGGGAGTACAAACCATGGTTTGCTTGTGACCTACTAGTGGACTTGAGCAGTACATTTG---------TACCGCG
AAGCGATAATTGATCCGTGATTCCGTGCCCGGCCGATATTCTCGGAGGATTATGTCGAGAGTCTGCTCCATGCTCACCAA
TAATGCCG--------GAGAGTAGAAGCAATGAAGCAAAGCAAGGGTTGCCGAAATTCCGCGTTCGTAAACGGCAAGCAA
AGCTAGTCGGCAAAGTCGTTGCAGAAATCCCAAGTTCTGGTATACGGCACACCGGCCGATCCGCCATGGGCGCCGGCCCC
CGT--------------TCTGTGCATGTGTGTTTGGCAGGCAGAGGCAGGAGTGATGTCAGGCCAGTCTCTCGCAAAAAA
GAAAGAAAAGGAG--------GAGGATTGAAGTCGGGCCAGCCGAGGTGATGATGGAGTCGTAGCTGAACGAAGCCGAGC
CAACATTCGTTTCAAAAAAAAAAGCCGAGCCAACAGGAGATAGATAGACGAGTTACCGGGCGGAGCACGCATGCGGCATG
TTGCACTGTTGTCGCCATGAATGCGAGGATAGGGA------------------TAGGGAGAGGTGCCCTGCCCGCCTTGC
ACTGCCATGTGCA--------CCGCCCTGCCCTGCTGCTTGCCGATGCTAATGCT---CGGCCGGGGTGGGCAGGGCATG
CTGCATGATGCGTCCTCGTCGACGCCAGCCAAGACCTACTACCCTCATCACGGGGCCG----TTGCATCCGCCCAGG
>chr2D_378
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-------------------------------------------------------------AAGAAAAGAAACCGAGTTG
TGGTCGTACAAAAGAAAATTAAAGAT-----TGCATGCACATGATCCGTTGCACTTTTTTTAGCAGCTTTTTCGTTTCTT
TCTTTCCTCCCTTGTTCCATTTCACCTACCGTGAGCATGAGCCAATGGTCTGTCCTGACAAACGTGTTTGAACCACTACC
GGTTGCCTGGACGTGTCAAGCGTACGGTGAGCAAGCATGAAGCATCTGATCGACAACTGAAAACAAATGTACTGCTTTCC
TGA---TATTAATGTTTTAGCTTCGAGCTTTACCTGAACTGTACGCTACACAAACACTG--------CTACTTAATTGGG
ATAAGTGTGGCTTTTTAGTTTAAATACGTTTGGCTATTCCACACTCCATGCCATCCTCAAGCACTCTTAAAATCTGTTCG
CTTA-TGAGGCCAGAA------CAATTAGGAAGCCAACTTTTGTAGGAGAATATGATTCAGCTCTACGGCTCTACCAACA
ATTATGAGCTAGTACCAACTAGTGTAGTATTTATCAATATAATCAGACAGGTGCGTAATAATAATAATTACC-AAAAAGG
CAAAGAGAGGCAGGTATGTATGAAGTCACCTTCTGGTGAAATTCAGTACAATTATCAAGTAGTAGCTCTTTTCAAAGACA
CATCTGAACTGCCTCAATTCTAATCGAATTGATTATCAATATAAAAA-AGACCCCACACGTATGTTCTTTTCCCAAGATT
CGTTCATGCATGTTCACATTGTCATTTCAGCGGAGCAGCATTTGCCAACCAGCATCTAGTCCAGTCCAAACATTTTTAAT
TATCTTTTTTTTTGTTTCCTTTCATCAAGAGCTATGCACATGCAGAGCAAATCACCAAACGCACAGCCCATCC-------
------------CCTCCGC------------CCCTCTTTATATACCACACGCGAACACGAGAGCGGTTGAGGAAAACAAA
AACCACAC-CGAGCTGAGCCTACTGTGCTGCCTCTGCCTGCACCAACC--------------------------------
--------AAGAAAGCAAA-GCCCAATCAAGAAGAAGAAGG------AGAATGGGGGAGGCGCCGTGCAGCGTGGTGGC-
--GCCGCGCCGTTCCCCGGCGCGCTTCCGCCTGCCGCGCCACGGGCTGCGCCGCAAGGTCCACGTCGTCCGGCTCGGGAA
CGGTGGTGCCGGTGCCGGCGCACGGGCTGGCGGGGTCCGCCGCCTCTGCGGCCTCCGGCGTCGGATCAAGCTCCGGTGGT
TCCGGAGCGCCATGTGGCGCCTGGCCGAGCTCTGCGTGGCGGTGCTGTCGGGGCCCCCGGGGACGGCCGACGCCCCGCCG
TCGTGGACCGGCGTGGAGCCGTGCTTCGCCGCGCCCTTCCTGCCGGCCGCGCTGGTGAGGCGCGCGGGGCAGGAGTAGCT
AAGCCTAGCTGGTGACGGTGCTGCCCTGTGAC------CATGAAGACAACAACACTAATGTATATA-CAGTACTCACTAC
TGCTCAATGGAGA-------AGTAGATTGAT---ATGTAACGATTTTTTTTAACCGCGACTCAAGCGATTCGTTGATGTC
TGAAAGTCTGAAGATTGCATTGCT-ACATTCCCCCTGCTCTTTCTCTGGATTTCCTTTAGCTCTGTTCCTTTTAAGATCT
TTCTTTTTTTTTTGCTTCCAAAGCAGAGGCAAGTTCGGTGCTGTATG---GTACTGTGCTATAGCAATTCCAA-------
TCATGTTGCGAGTACAAACCATAGTTTGCTTGTGATCTACTAGTGGACGTGAGTAGTACATTTG---------TACTGCG
AAACGATAATTGATCTGTGATTCCGTGCCCGGCCGATATTCTCGGC-------GTTGAGCGTCTGCTCCATGCTCACCAA
TAAATAATGCTGGAGAGAGACTACAAGCAATGAAGCAAAGCAAGAGTTGCCGAAATTCCGTGATCGTAAACTGCAAGCAA
AGCTAGTCGGCAAAGTTGTTGCAGAAATCCCATGTTCTGCTATACGGCACACCGGCCGATCCGCCATCGGCGCCGGCCTC
CATTCTGTGCAGTACAGTCTGTGCATGTGTGTTTGGCAGGCAGAGGCAGGAGTGATGTCAGGCCAGTCTCTCGAAAAAAA
AGAGAGAGAGAGAAAAAAGGAGAGGATTGAAGTCGGGCCAGCCGAGGCGATGATGGAGCCGGGGTTGAACGAAGCCGAGC
CAACAGG----------------------------------AGATAGACGAGTTACCGGGTGGAGCACGCATGCGGCATG
TTGCATTGTTGCCGCCATGAATGCGAGGATAGGGA------------------TAGGGAGAGGTGCCCTGCCCGCCTTGC
ACTGCCATGTGCA--------CCGCCCTGCCCTGCTGCTTGCCAATGCATTGCTAGCCCGGGCGCGGTGGGCAGGGCA--
-TGCATGATGCGTCCTCATCAACGCCAGCCAA-ACCTACTACCCTCATGGC---GCCG----TTGCATCCGCCCAGG
>SNPs
SSSSSSSSSSSSSSSSS--------------S-------S---------------------------S------------
-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S--
----------------------------------------------------S---------SSSSSS------------
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S-------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
----------------------------------------------------------------------S---------
----S----S----------------------------------------------------------------------
---------------S------------------------------------------------S---------------
---------------------------------S-----------S-S-----S-----------------SS-------
----------------------------------------------------------------S---------------
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-S--------S-S--------------------------------------S----------------------------
---------------SS--SSSSSSSSSSSS----------------------------------------S---S----
--S-S--S----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS-----------------------S-----S--SSSSS----------------------------------S
SS---------------------------------S-----------------------------------S--------
------------S--------S----------------------------------------------------------
--------S-------------------------------------------S------------------------S--
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----------------------S-----S-------------------S-----------------S-------------
-------------SSSSSSS--------S-----------------S-----------S---------------------
----------S-------------S-----------------------------------S---S---------------
-----------S-S---------------------------------S--------------------------------
-----------------------------------------------------------SSS-SSSSSSSSSS-------
---------S----------------------------------------------------S-----------------
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-S----------------------------------------S-----------S-------------------------
-------SS---------------------------------------------------S---S----------S----
--S------------------S----------------SS----------------------------------------
-------------------------------------------------------S------------------------
------------------------S----------SSSSSSSSSSSSSSSSSS---------------------------
-------------SSSSSSSS-------S-S-------------------------------------------------
--------------------------------S-------------------------SSSS---------------
>forward_242
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--------------------------------------------------------------TGGCATGCATGACACAAA
GT------------------------------------------------------------------------------
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>reverse_1415
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------------------------------------------------------CCAAGAAAGCAAAGCCCCAG------
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>forward_1352
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----------------------------------------------------GAACACGAGAGCGGTTGAGA--------
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>reverse_2768
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-----------------------------------------------AGGGATTAGGGAGAGGTGCC-------------
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