>input_sequence_68684
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----------------ATGCAGCGCGCGTCCGCT------------CTGCTGCTCTGCTCCCTCTGTTGCCTCTTCGCGC
GGCCGTCGCAGGCGTTCCTCGACGGCACGCGCGGCGCCGGGGCGTACATTTCTCGGGTGAGTTCACGGTTTCACTTCGAG
TGCTATGCTAGT-------GGTGTTGTTCGTCGGTGGTGGCGGTTTCCGTGCTCTAACATTTCTTGTGC---------TC
GATTAACTAGCTGCTTAGCGAGGGATACGGCGAGGAGAAGATCCCCATGGCCGTCGTGGTGCCGTCGGTGCCAGATTACT
CCCCGCGGCCGGCACCGACCACTGTCGCTGTCGCCGCGCCCGCGCCCG------CGCCAACGCCAACGCCAACGCCGGTG
CCCGGCTCGGAGGAGTACATGCCGAAGCTGCCGTCGGACAGGCTGAGCCCTGGGGCGCCAGCCAGCGGCAATGCGGGCGC
ACCGGCACCTGCCGCGTCGGGCGAGGAGGCGAGCACCGCCTTCATCAGCAGCAACCCCGTGGTGCCGCTCCCCGCCGGCG
TCACCGACTCCGCAACCGTCCTGCCCATGCCCACCCCCGGTCAAGAGCAGCGGCAGGTA------ACCACTAGTACCAAT
CAGCAACTACT--TGCCTGCAGCTCTCGATTTCTTT-------------GCTCAAGGCTTTATCACAAGCTCGCTTTCCC
CGTGCCTCCGCATCTATTGAGCTTTGTTGACCTTGCTCTGACTTCTTTTGGTTCCACGCTTTCGCAGGACGTGGGGATGG
GCACCCTGCTTCAGGCCAGGGCGGTGCCGTTGGTCGCTCCTCTCCTCATGGTGCTCTACTTTTGA---------------
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>chr2B_1_TraesCS2B01G316900
ACAGTTGTAGTTGAGGGCAGAGCTTGACAGCAGGCGAACTTGCTTAAGGGTGAATTAGATAGTCTGTTTGAGTTGTTGTG
GGGGTGGGCGAGTAGCAAGTGATCCTTTGTATACACTTCAGATGAAGTTGTGGGCTGTAAGTGATGTTGTAGTGTTCACA
CTCTGTAACATTAACGGTGGTTTGGGTTCTATGCCCCTCTCCTCTTTATAAATATGATACGCACGAAGTATTTGAGAAAG
AAACAAAGCCGAGGAGCCCTGAATTCTGTACAAGTGAGGGTGAGCAGCCAG-----------GAAACGGCCGGGCTCAGA
TTTGACCGCATGGACCGACGAGTCATAAATATGGAGCAACTCCAAGCTTGGACCGCGCACCGCAGTATTGGAACTCACGT
GCACCGGCAACCGTGCCATGCCGGCCATTGATGCTGCCATTATCGGGCCCAAAAGCACCTCGGCCTCCGCCCAAAAGCTC
GACAGGGCTCCGCGCCCGGAACCAACACCGCATTGCTCCATTCCATCGTGCTGCTCGCGATGAGTCTCCCGACCCACACA
CACACACACACACTGACACGCAGAGGAAGAATGCGCGTCCTAGCGCGAGCAATCTGCTGGTAATCAGGCGCGTCC-----
--------TTGTGGCCTCGTCGTCACCACGCACGCCCAACCCAAAGCCTCCAAAGGTGGCCGCTTTGCCGCAGCCTTTTG
AGCACGACCAGCTGCTAGCCCGTACTAGGAGTAGCAGACTA-----ACCACCACCACCACCACC--------GTTTCCTT
TCGCAGTTTTGCATCGCTTTTTACCATGCACCGCCCCGCACTGACCTGCGGGCTAGGGAGAGCA--------GTGACCGT
TGCACCCCAC----AGACCCCACCCAAGGACCACGCACGTCCTACAAGGTCATGGCCGCACCGCACACGGCCTCGAGCC-
ACACTCAAACCAGACAGGACCGTCTGAGCAGACAACATAGGAAGTGAGAAAGGTGAGACGGGAGGCTCGCTGCCGACGCC
GACG------GGCAAGATGCAGCGCGCGTCCGCT------------CTGCTGCTCTGCTCCCTCTGTTGCCTCTTCGCGC
GGCCGTCGCAGGCGTTCCTCGACGGCACGCGCGGCGCCGGGGCGTACATTTCTCGGGTGAGTTCACGGTTTCACTTCGAG
TGCTATGCTAGT-------GGTGTTGTTCGTCGGTGGTGGCGGTTTCCGTGCTCTAACATTTCTTGTGC---------TC
GATTAACTAGCTGCTTAGCGAGGGATACGGCGAGGAGAAGATCCCCATGGCCGTCGTGGTGCCGTCGGTGCCAGATTACT
CCCCGCGGCCGGCACCGACCACTGTCGCTGTCGCCGCGCCCGCGCCCG------CGCCAACGCCAACGCCAACGCCGGTG
CCCGGCTCGGAGGAGTACATGCCGAAGCTGCCGTCGGACAGGCTGAGCCCTGGGGCGCCAGCCAGCGGCAATGCGGGCGC
ACCGGCACCTGCCGCGTCGGGCGAGGAGGCGAGCACCGCCTTCATCAGCAGCAACCCCGTGGTGCCGCTCCCCGCCGGCG
TCACCGACTCCGCAACCGTCCTGCCCATGCCCACCCCCGGTCAAGAGCAGCGGCAGGTA------ACCACTAGTACCAAT
CAGCAACTACT--TGCCTGCAGCTCTCGATTTCTTT-------------GCTCAAGGCTTTATCACAAGCTCGCTTTCCC
CGTGCCTCCGCATCTATTGAGCTTTGTTGACCTTGCTCTGACTTCTTTTGGTTCCACGCTTTCGCAGGACGTGGGGATGG
GCACCCTGCTTCAGGCCAGGGCGGTGCCGTTGGTCGCTCCTCTCCTCATGGTGCTCTACTTTTGAG-TTTCTTGTTGGGG
TACTAGACTA----GTAGTTCCTTTCTCT-----TATAAT-----CATCGAGTGATTAGTTGTCAGAATATGCGCTTGTA
ATCAG--CACCGTAGTGCTTTCGTTATCATCTAGTAGGCCGTTGTAAGCTCTAACCATCTGTAAACAGTGTCACCTCTGC
TCACTGCATGCTTCTTGTCTCTTGTTACAC--------TGCGTACGAGTGAAGTCTTAGGCATTGCAAATTTGCAATTCT
TAGACAGAGCATTGCATGATGCGACTTGTGGTGAAACTTTATGGGCCTGTTTGGTTGATTATTGGTCTCAGCAAGCCAGG
ATGTCGCAATCGCGTCGCTCGGATGCTGCAATGTGGTACCGGAGCCTTCCCGTGCGAATACCAGGACGGAGTGGCAACCC
ATGCTTGACCAGGTTCGGCACTTTGTCCCGGCTTGGCAGCGCGGGTTCATTCAGAGGTCTGGCAGACTCAACCTCGTCAA
GTCTGTCATCGCGCGCCCTATACACCATCTCATGATCTTGGAGGCGCCGCAATGGGTTTTATTTTATTTTCTTTTTGCGG
GAGGCCGCAACGGATTTTCGAGTTGTGGCTTCGCTCCTCCTTCTGGGCGGGCAAGGAAAAATAGCACGCTGGGCAGCGTC
TGGTCGCATGGAATTCGATATGCCGCCCGCATTGCTTCGGCGATCTGAGAGTGGATCAATAGGCGCGCCGCTGTTGAAAT
CGCCTCATCCATCGCCAGTCAAGCCCCAACGCGTACTCAGAACTTACGCACGATGCATCCAGCGTTAGGCAAAAGGAGAT
GGGAAATTGATATCCCAATGGGACTGAGCTTCGCAATGAAAATGCAGCTGTCGAAACGGACGTCGGGCGACAACTGTGGA
AAGGGACGACGGGCGACATGGTATCTTCGTCTCGCCTAGCGACGGCTCTGGTTACCTACAAGAGGTTGTGCATGGGCCAA
ACTACATTTGAATCGGCCACGTATATTTGGAAGTGTTTGTTGAACATGTG
>chr2D_246
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-----AAGCCGAGGAACCCTGAATACTGTACAAGTGTA----------CAG-----------GAAACAACCGGTCTGAGA
TTTGACCGCATGGACCGATCAGTCATAAATATGGAGCAACTCCAAGCTTGGACCGCACACCGCAGTATTGGAACTCACGT
GCACCGGCAACCGTGCCGTGCCGGCCATTGATGCTGCCATTATCGGGCCCAAAAGCACCTCGGCCTCCGCCCAAAAGCTC
GACAGGACTCCGCGCCCGGAACCAACACCGCATTGCTCCATTCCATCGTGCTGCTCGCGACTAGTCTCCCGACC------
----CACACACACTGACACACAGAGGAAGAAAATGCTGCCAAGCGCGAGCAATCTGCTGGTAATCAGGCGCGTCC-----
--------TTGTGGCCTCGCCGTCACCACGCACGCCCAACCCAAAGTCTCCAAAGGTGGCCGCTTTACCGCAGCCTTTTG
AGCACGACTAGCTGCTAGCCCGTACTAGGAGTAGCAGACTACCAGCACCACCACCACCACCACCCCTGTCGTGTTTCCTT
TGGCAGTTTTGCATCGCTTTTCACCGTGCACCGCCCCGCACTGACCTGCAGGCTAGGGAGAGCAGTGAGCCAGTGACCGT
TGCACCCCACAGGCAGACCCCACCCGAGGACCACGCACGTCCTACAAGGTCATGGCCGCACCGCACACGGCCTCGAGCC-
A-ACCCAAAGCAGACCGGACCGTCTGAACAGACAGCATAAGAAGCGAGAAGGCAGAGACGGGAGCCTCGC------CGCC
GACG------GGCAAGATGCAGCGCGCGTCGCTCGCGTCCGCCTTGCTGCTGCTCTGCTCCCTCTGTTCCTTCTTCGCGC
AGCCGTCGCAGGCGTTCCTCGACGGCACGCGCGGCGCAGGGGCGTGCATTTCTCGGGTGAGCTCACGGTTTCACTTCGAG
TGCTATGCTAGC-------GGTGGTGTTCGTCGGTGGCTGCGGTTTCCGTTCTCTAACGTCTTCTTGTTTCTTGTGGTTC
GATTAACTAGCTGCTTGGCGAGGGCTTCGGCGACGAGAAGATCCCCATGGCCGTCGTGGTGCCGTCGGTGCCAGATTACT
CCCCGCTGCCGGCACCGACCGCTGTCGCGGTCGCCGCGCCTGCGCCTGCGCCCACGCCCACGCCAACGCCAACGCCGGTG
CCCGGCTCGGAGGAGTACATGCCGAAGCTGCCGTCGGAGAGGCTGAGCCCTGGGGCGCCGGCCAGCGGCAATGCGGGCGC
GCCGGCGCCTGCCGCGTCGGGCGATGGGGCGAGCACCGCATTCATCAGCAGCAACCCCGCGGTGCCGCTCCCCGCCGGCG
TCACCGACTCCGCCACCGTCCTGCCCATGCCCACCCCTGGACAAGAGCAACGGCAGGTACT----ACTACTAGTACTAAT
CAGCAACTAGTAATTTCTGAAGCTCTCGATTTCTTTAGTTCGTAGCTTTGCTCAAGACTTTATGCAT-GCTTGCTTTCCC
CGTGCCTCCGCGTCTATTGAGCTTTGTTCACCTTGCTCTGACTTCTTTTGGTTCCACGCTTCCGCAGGACGTGGGGATGG
GCACCCTGCTTCAGGCTAGGGCGGTGCCGTTGGTCGCTCCTCTCCTCATGGTGCTCTACTTTTGAG-TTTCTTGTTGGGG
TAGTAGACTA----GT---TCCTTTCTCTTACTGTATAAT-----CATCGTGCGATTAGTTGTCAGAATCTGCGCTTGTA
ATCAG--CACCGTAGTGCTTTCGTTATCATCTAGTAGGCGATTGTAAGCTCTAACCATCTGTAAACAGTGTCACCTCTGC
TTACTGCATGCTTCTTGTCTCTTGTTACACCTGTATCCTGCGTACGAGT-AAGTC---TGCATTGCAAATTTGCAATTCT
T-------------------------------------------------------------------------------
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>chr2A_246
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-----AAGCCGAGGAGCCCTGTATTCTGTACAAGTGTA----------CAGTGAGGAGCCAGGAAACGGCCGGGCTGAGA
TTTGACCGCATGGATCGAGCAACTC----------------CAAAGCTTGGACCGCGCAGCGCAGTATTGGAACTCACGT
GCACCGGCAACCGCGCCGGCCT-----TTGATGCTGCCATTATCGGGCCCAAAAGCACCTCGGCCTCCGCCCAAAAGCTC
GACAGGACTCCGCGCCCGGAACCAACACCGCGTTCCTCCATTCCATCGTGCTGCTCGCGATGAGTCTCCCGACCC-----
---ACACACACACTGACACACAGAGGAAGAATGCACGTCCTAGCGCGAGCAATCTGCTGGTAATCACCGGCGGCCGACCG
CACGTCCTTTGTGGCCTCGCCGTCACCACGCACGCCCAACCCAAAGTCCCCAAAGGTGGCCGCTTTACCGCAGCCTTTCG
ACCACGACTAGCTGCTAGCCCGTACCAGGAGTAGCAGACTACCACCACCACCACCACCACCACCCCTGTTGTGTTTCCTT
TGGCAGTTTTGCATCGCTTTTCACCGTGCACCGCCCCGCACTGACCTGCAGGCTAGGGAGAGCAT---------------
--------------AGACCCCACCCAAGGACCACGCACGTCTTACAAGGTCATG---------------GCCTCGAGCCA
A-ACCCAAACCAGACCGGACCCTCCGAGCAGACAGCATAGGAAGCGAGAAGACAGAGACGGGAGCCTCGC------CGCC
GACGCCGACGGGCAAGATGCAGCGCGCGTCCCTTGCGTCCGCTCTGCTG------------CTCTGCTCCTTCTTCGCGC
AGCCGTCGCAGGCGCTCCTCGACGGCACGCGCGGCGCCGGGGCGTACATTTCTCGGGTGAGCTCACGGCTTCGCTTCAAG
TGCTTTGCTAGTGCCTACTGGTAGTGTTCGTCGGTGGTGGCGGTTTCCGTGCTCTAACATTTTCTTGCTTCTTGTGGTTC
GATTAACTAGCTGCTCGGCGAGGGCTACGGCGACGAGAAGGTCCCCATGGCCGTCGTGGTGCCGTCGGTGCCAGATTACT
CCCCGCTGCCGGCACCGACCGCTGTCGCTGTCGCCGCGCCCGCGCCTGCGCCCACGCCAACGCCGACGCCGACGCCGGTG
CCCGGCTCGGAGGACTACATGCCGAAGCTGCCGTCTGACAGGCTGAGCCCTGGGGCGCCGGCCAACGGCAATGCGGGCTC
GCCCGCGCCTGCCGCGTCGGGCGACGGGGCGAGCACCGCCTTCATCAGCAGCAACCCCGCGGTGCCGCTCCCCGCCGGCG
TCACCGACTCCGCCACCGTCCTGCCCATGCCCACCCCTGGACAAGAACAACGGCAGGTAGGAGTAACCGCCACTACCAAT
CAGCCACCACTAATGCCTGAAGCTCTCGATTTCTTTAGCTCGTAGCTTTGCT-------------CAAGCTTGCTTTCCC
CGTGCCTCCGCATCGATTGAGCTTTGTTCACCTTGCTCTGACTTCTTTTGGTTCCGCGCTTTCACAGGACATGGGGATGG
GCACCCTGCTTCAGGCCAGCGCGGTGCCGCTGGTCGCTCCTCTCCTCATGGTGCTGTACTTTTGAGCTTTCTTGTTGGGG
TAGTAGAGCAGTACGTAGTTCCTTTCTCT-----TAGGACTGATGCATCGAGTGATTAGTTGTCAGCATCTGCGCTTGTA
ATCAGCACACCGCGGTGCTTTCGTC---------TAGGCTGTTGTATGCTCTAATCATCTGTATACAGTATCACCTCTGC
T-----------TCTTGTCTCTTGTCACACATGTATCCTGTGTACGAGT-AAGTCTCATGCATTGCAA------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS-------------------------------SSSSSSSSSSSS----------------------------S---
------------------SS------------------------------------------------------------
-----------------S--------------------------------------------------------------
------S--------------------------------------------------------------------SSSSS
SSS----------------S------------------------------------------------------------
-------------------S--------------------------S-------------------S-------------
--------S-----------------------------------------------------------------------
-S-------------------S---S-----------------------S------------------------------
--------------------------------------------------------------------------------
-S--S----------S------------------S---------S-----S-SS----------S-----SSSSSS----
-------------------------------SS-----------------------------------S-S---------
S------------------------------------------------------------S------------------
-----------------------S--------------------------------------SS-SSSS-----------
----------------S-------S--------S----------------------------------------------
------S-------------S-------------------------S---------------------------------
-----------------------------------------------------------S--------------------
S-----S-----------------S-S--------------------------------S--------------------
-------------S-----------------------S--S--------S------------------------------
-------------------S------------------------------------S------SS------S--------
----------------------------S---------------------------------------------------
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--S------------------------------------------------------------------S----------
---------------------------------------S----------------------------------------
-S-----------------------------------------------S------S-S---------------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_30
----------TTGAGGGCAGAGCTTGACAG--------------------------------------------------
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>reverse_1990
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---------------------------------------------------------------------ATGCGCTTGTA
ATCAGCACC-----------------------------------------------------------------------
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