>input_sequence_68676
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-----------------------------------------------------------ATGAAGACTGCCATTGCAGCA
GCCGCTCCCCTCCTCCTATTCCTGGCCCTGGCCGCCATGGCAGGCGCCGTGACGTTCGACGCGACGAACACGGTTCCGGA
CTCCGCCGGCGGGCAGAGATTCGACCAGGACGTTGGCGTCGACTACGCCAAGCAGGTGCTCTCCGAGGCCTCGTCCTTCA
TCTGGACCACCTTCAACCAGCCCAACCCGGAAGACCGGAGG------GACTACGACTCCGTCACCCTCGCTGTGGTTGAC
AACATCGAGCCTGTGGCCCAGACCTCCGGGAACGCTATCCAACTCCGAGCCCAGTATGTCGCCGGCTTCGACGAGGGCGA
CGTCAAGAAGGAGGTAATAAATCGAATTCTGCACCCAGGCCGCACGGCGCGACATACCTTCATGTATAGCTTCTTAAGTT
TCAAACACGAGATTGATGCGCGCGCTCGCAGGTGAAGGGCGTGCTGTACCACGAGGCGACGCACGTGTGGCAGTGGAACG
GGCAGGGCAGGGCAAACGGCGGGC---TCATCGAGGGGATCGCCGACTACGTGCGGCTCAAGGCCGACCTCGCGCCGACG
CACTGGCGCCCGCAGGGGAGCGGCGACCGTTGGGACGAGGGGTACGACGTGACGGCCAAGTTCCTGGACTACTGCGACTC
CCTCAAGGCCGGGTTCGTGGCGGAGATGAACAGCAAGCTCAAGGACGGATACAGCGACGACTACTTCGTGCAGATCCTGG
GGAAGAGCGTGGACCAGCTGTGGAACGACTACAAGGCCAAGTACCCCCAGCCCCAGGGCTGA------------------
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>chr1A_1_TraesCS1A01G166100
GCCGCGCCCGGGAGGAGGCCCGTGGACGGCTGCGCTCAGACTCCATCCGTCGAGAATCCATTGCTTCCGCCCAAATGGAG
CATGGATCCGGCGCTAGGCCGGCCATAGCTGCCTCACCGGAGGCCTTACGGTCCATCTGGCGTTCGAACGCGCTCGCGGA
CTCGCAACCCCTTCAATGGCGCGCCGAGCATCGGGACGCACCATGAGCCTCGTCCGCCGCGGCCATGGCACGACGTGCTC
GCCGTGCAAGGCACCGGGCGCGGGAGGCGGCGGCGGATGTCGGCAAGGCAGAGTCACATTCTCCGGTGCCCCGTATGGCG
CATCAGTCCAGGCGCCGCAACCGCATCGTGGTGGATGTCGGCGGCTCGTCCTCGGATGGATCTATCATCGATCTGACGTC
CACCGGCACCGTTCGGTTGCGGTCTACGATGAGAAAGTGTAGGGCAAGGGAGACGGCGGGGCCTTGAGTCCCATGAGCCA
GCTATTTATTTAGCTTGGAACCCCTACTTAATTTAGGGTAAACTTGATCGATCGTGAAAAGAAAAACTAAAAACCACAGA
AAACGAGTTCAACGGAAGACCTGACACGTAGGTACTTACACTGACAAGAATTTGAGCAGTCAAGCACGGCACAGAGACAT
CGACAGATTGGAAAAATATTGCCGCCGGCTGCCCCCTAGTGTAAGGAAGCCCTTCTGGCCTCATACCAAAATTTAACACC
ACCAAGACACGGCAGACACCATCATCATCAAACATTTAGCTTCCTCGCAGCTTCGCGAGTTCATTGACACCGCACATTGG
CA--AGTCGTCCAAAGATAAGTCAAAGCAAGTTTGGCCATGTTGGAAAGAACACGTCAAGCGAGGACTAGT---------
--------ACGCACCGGTGGTACCAATTCAAACGACTTGATGAGTTGATCACACTGCGGTCGTCCAGCCTATATAAATTT
GGCCCTCCACTGCCACTCACCGAAGCACTTAAGAGAAGCTCACTAGCTAGGCACGCACGATGAAGACTGCCATTGCAGCA
GCCGCTCCCCTCCTCCTATTCCTGGCCCTGGCCGCCATGGCAGGCGCCGTGACGTTCGACGCGACGAACACGGTTCCGGA
CTCCGCCGGCGGGCAGAGATTCGACCAGGACGTTGGCGTCGACTACGCCAAGCAGGTGCTCTCCGAGGCCTCGTCCTTCA
TCTGGACCACCTTCAACCAGCCCAACCCGGAAGACCGGAGG------GACTACGACTCCGTCACCCTCGCTGTGGTTGAC
AACATCGAGCCTGTGGCCCAGACCTCCGGGAACGCTATCCAACTCCGAGCCCAGTATGTCGCCGGCTTCGACGAGGGCGA
CGTCAAGAAGGAGGTAATAAATCGAATTCTGCACCCAGGCCGCACGGCGCGACATACCTTCATGTATAGCTTCTTAAGTT
TCAAACACGAGATTGATGCGCGCGCTCGCAGGTGAAGGGCGTGCTGTACCACGAGGCGACGCACGTGTGGCAGTGGAACG
GGCAGGGCAGGGCAAACGGCGGGC---TCATCGAGGGGATCGCCGACTACGTGCGGCTCAAGGCCGACCTCGCGCCGACG
CACTGGCGCCCGCAGGGGAGCGGCGACCGTTGGGACGAGGGGTACGACGTGACGGCCAAGTTCCTGGACTACTGCGACTC
CCTCAAGGCCGGGTTCGTGGCGGAGATGAACAGCAAGCTCAAGGACGGATACAGCGACGACTACTTCGTGCAGATCCTGG
GGAAGAGCGTGGACCAGCTGTGGAACGACTACAAGGCCAAGTACCCCCAGCCCCAGGGCTGATCGACGATGCATGCAGTT
TGTTGTTGTATGTGTACCGGTCTTCGTCTACATACAGATACATTATACTCCCTCTGTAAACTAATATAAGAGCGTTTAGA
TCACTAAAATAATAATCTAAACACTTTTATATTAGTTTACAGAGGGAGTACTTGTATTACTGTACAATTTATGTACTGCC
TGGAATGGAATAAATCAGCGTTGGCACGGTGTGTGTTAACGAATTGACGAGACAAAGGGACCGTCTATAGGTCATGTCAT
CGGTTGCCTGAAATACATTGAACATCAGTCACTTTCTTTACAGCATCTCCAAAGGTGACCCGCAAATTTTCTCTCACATT
TGTTCATGGACAAGAAGACCAGTCCACGAACACTCTGTCCGTATTTATTTCAAACATTTTTTCAACAAACTGGATGAAAT
TCATGCAAACACGAACAATTTCATGAAAATCAGACGAAAACATTTATATTTTGGACATATTTTTAACTAAAGACGATACC
GGAGTAAGATAAAACTAGTCTACGGCCGGCACCAGCGGATATCCATTCTGACGACATGGATACCCTTAACTAGTCTACTG
CCGGCCGCGGCGGATCTCCATTGTCGTCCCCATGTCTGACAACCGTGAGTCCGGAGGTATATGCTTTAGCGCAAAGGCGG
CTCACCTCCCCGGCCGATCCTTCAGCCGGAGGGGAAGTGTCCCTATGTTGTACGAGTCAGGGTTGGTTTTTGATACGGAT
CAGGGTTGGTTTTTGGTACGGATCAGGGTTTGTCCACCTAAAACACATCAAATCCATGAATCAAAATCAACAAAAGTTCA
TTAAACCAACAAATCACAAAACAAAATTGATATGGCTATTTTTGTGGGGATTTTTAAAATTGGGCAAAAACACACAAAAT
TGGGGCTAGAAAATGGAGAGGGAGACTCCAAAGTGTGAATCAACCTTGGCTCTGATCCAAGATGATGTAGGGTGAAACCC
TAATTGGTTGATCTTTTCACAC
>chr7A_754
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---------------------------------ATTTAGCTTCCTCGCAGTTTCGCGAATTCATTGGCACCGCGCGTTTG
GCACAGTCGTCCAAAGATAAGTCAAAGCAAGTTTGGCCATGTTGGAAAGAACACGTCAAGCTGCATGGTTCACTAGTACG
TACCACGCACGCACCGGTGCTGCCTATAAATTGAGCTGCCCAGCACACCACGTAG-------------------------
-------------CACTCACCAAAGCAC------------------CCAGACGAGCGAGATGAAGATTTCCATCGC----
-----------CCTCCTCCTCCTGGGCCTGGCAGCCACGGCGGGCGCCGTCACATTCGACGTGACGAACGAGGCGTCGAG
CACGGCCGGCGGCCAGCGGTTCGACCAGGAGTACGGCGCCGACTACGCCAAGCAGGTGCTGTCCGACGCGTCCTCCTTCA
CCTGGGGCATCTTCAACCAGCCGGACCCCTCCGACCGTAGGCCCGCCGACGGCGACACCGTCACCCTCGCCGTCCGCGAC
ACGGACGGCA---TCGCCGCCACCAGCGGCAGCACCGTGGAGCTCAGCGCCCGCTACGTCGGCGGCATCACCGGCGACGA
CCTCAAGGAGCAGGTGAC--------------------------------------------------------------
------------------------------------GGGGGTGCTGTACCACGAGGTGGCGCACGTGTGGCAGTGGGGGC
TGCAGGACTACGGCGCGCACTCGGGGGTCTTCGAGGGCATCGCGGACTACGTGCGGCTCAAGGCCGGGTACGTGCCGGGG
CACTGGGTGAAGGAGGGCGGCGGCGACCGGTGGGATCAGGGGTACGACGTGACGGCCAGGTTCCTGGACTACTGTGACTC
GCTCAAGCCCGGCTTCGTGGCGGAGATGAACGGCAAGCTCAAGGACGGCTACAGCGACGACTACTTCGTGCAGATCCTGG
GGAAGAGCGTGGACCAGCTGTGGAGCGACTACAAGGCCAAGTA-------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S-------S-------S------S-S--S-
SS-----------------------------------------------------------SSSSSSSSSS---------
-------------------S-S--S--SS-SSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS--------S------SSSSSSSSSSSSSSSSSS-S--S-SS--SS--------S-S----S--SSSS
SSSSSSSSSSS------SS------S------S----S---S--------S--S-------S-------SS--SSS--SS
-S-S--------S---S-S-----------SSSS----S---------------------S-----S--S--S-------
S----SS--S------------SS----SSSS-----S------------SS----S-------------S--SSSS---
-SSSS--SSSSSS-S---SSS---SS---S-S-S-SS-SS-S---S-S----SS--S----S----S--SS--SS-S---
-S-----S--S----S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------------S-S-----------------SSSS
S-----S-SSS-SSSSSSS-SS-S-----S-------S-----S----------------------SSSS--S----SS-
------SSSSS-S----SS----------S-----SS---------------------S---------------S-----
S------S----S------------------S----------------S-------------------------------
------------------------S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS
>forward_588
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--------TCAACGGAAGACCTGACACG----------------------------------------------------
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>reverse_2044
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-------------------------------------------TTGACGAGACAAAGGGACCG-----------------
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