>input_sequence_68645
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----------------------------------------ATGTATCACATGGTGGACAGCAGGGACCAGGTAATGCACG
CGTTTGCTCCGGCGACGGCGCAGGGCGCGGCTCCGACCATCTCGTTCGCCTTCCCCTGCCCCGGCGCGGAGCAGAGCGCC
GGCCTGCTTCGTGGCGCCAGCTACCTCACTCCCGCGCAAATCCTCCAGCTCCAGTCGCAGCTGCACCACGTGCGCCGGGC
GCCGGGCGCGGCCATGGCCGCGGTGGGGCAGCCGATGAAGCGGCACGGCGTGGCAGCGCTCCCGGCGCGGCCGGCGACCA
AGCTTTACCGCGGCGTAAGGCAGCGGCATTGGGGGAAGTGGGTCGCCGAGATCCGCCTGCCCCGCAACCGCACCCGCCTC
TGGCTCGGCACCTTCGACACCGCCGACGAGGCCGCGCTGGCCTACGACGCCGCCGCCTTCCGGCTCCGCGGCGAGTCCGC
CAGGCTCAACTTCCCCGAGCTCAGGCGCGGCGGCGAGCACCACGGCCCGCCGCTCGACGCCGCGATCGACGCCAAGCTCC
GCTCCATCTGCCACGGGGAAGACATGCCCCAGAGCCAGAGCGATGAGACGCCGGCGCCGACGACGACACTGACGCCGATT
TCTTTCCCGGACGTCAAGAGCGAGCCAGTCTGCTCCGTCTCCGAGAGCTCGTCGTCGGCTGACGGCGAGGTGTCCTCGTG
CTCCGACGTCGTCCCGGAGATGCAGCTTCTTGATTTCTCGGAGGCTCCATGGGACGAGTTCCTGCTGCGCAAGTACCCGT
CGCTCGAGATCGACTGGGACGCGATCCTTTCTTGA---------------------------------------------
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>chr4B_1_TraesCS4B01G268100
AAGGTGGCTCACCAAATGTAAAGGCATTGCCGTTGAACGAATCAGACGGGGACAACAATTCAAACATGTTATCGAACCCC
AAATCTGGCAACCCCGCAAGACTAAGACACCGAAGAAGGAAGTCATACATGTCTGCCACCAACCAAGAACCCAGCACAAG
ATCTATCCTCCAGATGTCATTGATGCACCATTATCTACATCCACTATTTGACTATCTCCCAAGCTCCGCATCGACGTTGG
AGCAGATGTCGTCGCAACGGCGGAGTGAAAGGACACAAGTCCACCACATGGTAGTTCCCAAATGCATTACCGATCATAGA
GCTGATCGTCTTGTCGGTCGGAGAAGGAATTGAAGCTTCTTTGTTCAGCGCCGTCGACACCGAGATATGGAACGTCCCAA
AACCTAGCCCACTAGATCCCTGAAACCTCTGCAGAAGAAACAAAAATGTTTTACCACCGAGCCGTGAGTGATCGTGAGTG
CTCGGAGACCGTAGCAACCATGCTGCCGCGTAGATCAGTCACTCGACGACAGTCAAGTGACAGCTAGATCTGGACTTTAT
CAGGTCAAAATCGCCCCTTGGCCAATCCCAAGCCGCCAGGTGCCCGTCGTGTCACCGCCACCTGCCCGGCGACGCCCGTC
CGGTCGTGGAGGCGTCCCGACAGGTGGCAGTAGGAGATCGCCGCGTACACGAGGCGCCTCCTCATTGGCCGGATCCTGCT
TCCGGCGCGCTTATAAAAGAGCCCGGCAATGGCTGTTCTTGCTCACCAAATCAAGCGCTTCCTCCGCCGCTGCCCAACAG
CTCGCACCCGGCTCCCATTCATTCTCTTGGCAAATCGCCCAGTTCATCCTAAATTACCAGCTCTCCTCGGCTTCCCTTCC
TCCAAATCGTCGGCGTTTTCTTCCTCTGGTTCTCTGCCTGTGTGTCCGAGTTTCTTGATCGACAAGGGCATGGCGACGAC
GGTGGACTGGCGCAGCTATAGGCCCGATCTTCCTGCCGCGATGTATCACATGGTGGACAGCAGGGACCAGGTAATGCACG
CGTTTGCTCCGGCGACGGCGCAGGGCGCGGCTCCGACCATCTCGTTCGCCTTCCCCTGCCCCGGCGCGGAGCAGAGCGCC
GGCCTGCTTCGTGGCGCCAGCTACCTCACTCCCGCGCAAATCCTCCAGCTCCAGTCGCAGCTGCACCACGTGCGCCGGGC
GCCGGGCGCGGCCATGGCCGCGGTGGGGCAGCCGATGAAGCGGCACGGCGTGGCAGCGCTCCCGGCGCGGCCGGCGACCA
AGCTTTACCGCGGCGTAAGGCAGCGGCATTGGGGGAAGTGGGTCGCCGAGATCCGCCTGCCCCGCAACCGCACCCGCCTC
TGGCTCGGCACCTTCGACACCGCCGACGAGGCCGCGCTGGCCTACGACGCCGCCGCCTTCCGGCTCCGCGGCGAGTCCGC
CAGGCTCAACTTCCCCGAGCTCAGGCGCGGCGGCGAGCACCACGGCCCGCCGCTCGACGCCGCGATCGACGCCAAGCTCC
GCTCCATCTGCCACGGGGAAGACATGCCCCAGAGCCAGAGCGATGAGACGCCGGCGCCGACGACGACACTGACGCCGATT
TCTTTCCCGGACGTCAAGAGCGAGCCAGTCTGCTCCGTCTCCGAGAGCTCGTCGTCGGCTGACGGCGAGGTGTCCTCGTG
CTCCGACGTCGTCCCGGAGATGCAGCTTCTTGATTTCTCGGAGGCTCCATGGGACGAGTTCCTGCTGCGCAAGTACCCGT
CGCTCGAGATCGACTGGGACGCGATCCTTTCTTGAATCAAGTTCATGCTTGATCCACAGCTCGTCCAAAGTGATTACTTC
TGCTTTCATTAGGCTCTTGGATAGGTTATTATGGGTTTGGTCAAGTATTCATGTGTAACATCAAC----CCCTGCTCTGC
TTGGTTTTTGAATGGCATTGCCAGGAAGGAGGTTTTATGTAGAAATTT-AAGTCTGTCATGTAGT--TTTGTGATTCAAT
AAAGATACACTTTGGTA---CTTGAAATTGCTGTTGATATGTGTGTTGTACTGCAGAACTTTTTTATATTGTTCAGAATA
GCATAACAGAAATGAGATGAAAATTTTAATATAAGATGAGTTCAAAAGTTGAATGAAACATGAACTGGTACAAAAGTTGC
AAATTTGTTCCTAAATGCATCAACTAACTTCAGGATTATGAAGTAAAAAAAATCCCACTCTTGATAGAAACTTGGAGATT
ATGTTGTTCTTGCACGGATTTGACTTTCAGAGACGATATTGCATGAGCTGGTTTCCACAGAAATCACCCTCGCACAAATC
TCTTTCCATCTAGAGTCTTGGGGCTTGATCATTGTGGTGTCAAAAACAATTTTAATTTAGATAACATTCCACTAATTTCA
AACTCATATGGTGTATACACATTGCTATATTGTCGTTAATTTTAGCATTAA-GATTATGAATGCCAATTTTCCTTTTTGG
TAGGGATGTGTTTGTAATGACATGTGATAATTGAGCCTTTAGAGAACATGAAGGTACTTAACA-----AACAGTTTGAAC
ATGGCTTGGGCGATGTTGGAATTCTTGCTGGTTCGGCATTGCCGCTCTTGGTTCAGGCTTGGTAGGTTTAGTTGTGATGT
ATCCTCTGCTCAGGTCGATCATCCATTGTCTCTCTGCTTCGTAT--CATGTTCCCGCCTGCCTGCGTTGACGCTAAAATT
ATTTTTAACGTCAGAAGTTTGAATGAAATTTTCTGGTGTGTTTGTGAGGATCAGTGATACGTAAGCCTTTAGGGAACAAG
AAGGTACTCCACA
>chr4D_462
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-------------------------------------------------------------CCGTGAGTGATCGTGAGTG
CTCGGAGACCGTAGCAACCAAGTTGCCGCGTAGATCAGTCACTCGACGACAGTCAAGTGACAGCTAGATCTGGACTTTAC
CAGGTCAAAATCACCCCTTGGCCAATCGCAAACCGCCAGGTGCCCGTCGTGTCACCGCCACCTGCTCGGCGACGCCCGTC
CGGTCGTGGAGGCGTCCCGACAGGTGGCAGTAGGAGATCGCCGCGTACACGAGGCGCCTCCTCATTGGCCCGATCCTGCT
TCCGGCGCGCTTATAAAAGAGCCCGGCAATGGCTGCTCTTGCTCACCAAATCAAGCGCTTCCTCCGCCGCTGCCCAACAG
CTCGCACCAAGCTCC----CATTCTCATAGCAAATCGTGCAGTTCATCCTAAATTACCAGCTCTCCTCGGCTTCTCTTCC
TCCAAATCGTCGGCGTTT-----------------------------------CTTGATCGAC-AGGGCATGGCGACGAC
GGTGGACTGGCGCAGCTATAGGCCCGATCTTCCTGCGGCGATGTACCGCATGGTGGACAGCAGAGACCAGGTAATGCACG
CGTTCGCTCCGCCGACGGCGCAGGGCGCGGCTCCGACCATCTCGTTCGCCTTCCCATGCCCCGGCGCGGATCAGAGCGCC
GGCCTGCTTCGTGGCGCCACCTACCTCACTCCCGCGCAAATCCTCCAGCTCCAGTCGCAGCTCCACCACGTGCGCCGGGC
GCCGGGCGCGCCCATGGCCGCGGTGGGGCAGCCGATGAAGCGGCACGGCGTGGCGGCGCTCCCGGTGCGGCCGGCGACCA
AGCTGTACCGCGGCGTGCGGCAGCGGCATTGGGGGAAGTGGGTCGCGGAGATCCGCCTGCCCCGCAACCGCACCCGCCTC
TGGCTCGGCACCTTCGACACCGCCGACGAGGCCGCGCTGGCCTACGACGCCGCCGCCTTCCGGCTCCGCGGCGAGTCCGC
CAGGCTCAACTTCCCCGAGCTCAGGCGCGGCGGCGAGCACCACGGCCCGCCGCTCGATGCCGCGATCGACGCCAAGCTCC
GCTCCATCTGCCACGGGGAAGACATGCCGCAGAGCCAGAGCAATGAGACGCCGGCGCCGACGCCGACACTGACGCCGATT
TCTTTCCCGGACGTCAAGAGCGAGCCAGTCTGCTCCGTCTCCGAGAGCTCTTCGTCGGCTGACGGCGAGGTGTCCTCGTG
CTCCGACGTCGTCCCGGAGATGCAGCTTCTTGATTTCTCGGAGGCTCCATGGGACGAGTCCCTGCTGCGCAAGTACCCGT
CGCTCGAGATCGACTGGGACGCGATCCTTTCTTGAATCAAGTTCATGCTCGATCCACAGCTCGTCCAAAGTGATTACTTC
TGCTTTCATTA----------------------GGTTTGATCGAGTATTCGTGTGTAGCATCAACCCCTCCCTGCTCTGC
TTGGTTTTTGAATGGCATTGCCAGGAAGAAGGTTTTATGTAGAAATTT-AAGTCTGTCATGTCGTAGTTTGTGATTCAAT
AAAGATACACTTTGGTAGTACTCGAAATTGCTCG---TATGTGTTTTGTATTGCAGAACTCTCTT-TATTGTTTAGAATA
GCATGACAGAAATGAGATGGAAATTTTATTATAAGGCGGGTTCAAAAGTTGAATGAAACATGAACTAGTATAAAAGTTGC
AAATTTGTTCCTAAATGCATCAACTAACCTCAGGACTATGAAGTAAGAAAAATCCCACTTTTGATAGAAACTTGAAGATT
TTGATGTTCTTGCATGAATTTGACTTTCAGAGACAACACTGCATGAGCCGATTTCCACGGAAATCACCGTCACACAAATC
TCTTTCCATCTAGAGTCTTGGGGCTTGATACTTGTGGTGTCAAAAAGAATTTTAATTTAGAGAACATTCCACTAATTTCA
AATTCATATGATGTATAGACATTGCTATATTGTCGTTAATTCTAACATTAAAGATTATGAATG-CAATTTTCCTTTTTGG
TAGGGATGTGTTTGCAAGGACCTGTGATAATCAAGCCTTTAGAGAACAATAAGGTACTCCTACTTGACAACAGTTTGAAA
AGGGCTTGGGCGATGTTGGAATTCTTGCTGGTTTGGCATTGCCGCTCTTGGTTCGGGCTTGGTAGGTTTAGCCGTGATGC
ATCCACTGTTCGGGTTGAGCATCCCTTGTCTCTCTGCTTCGGACACCATGTTCACGCCTGCATACGTT------------
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>chr4A_473
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------------------------------------------------------------------------CGTGAGTG
CTCGGAGACCGTAGAAACCAGGCTGCCGCGTAGGTCAGTCACTCGACGACAGTCAAGTGACAGCTAGATCTGGACTTTAC
CAGGTCAAAATCACCCCTCGCCCAATACCAAGCCGCCAGGTGCCCGTCGTGTCACCGCCACCTGCCCGGCGACGCCCGTC
CGGTCGTGGAGGCGCCCCGACAGGTGGCAGTAGGAGATCGCCGCGTACACGAGGCGCCTCCTCATTGGCCTCGCCCTGCT
TCCGGCGCGCTTATAAAAGAGCCCGGCAATGGCTGCTCTTGCCCACCAAATCAAGCGCTTCCTCCGCCGCTGCCCAACAG
-TCGCACCCGGCTCCAATTCATTCTCTTGGCAAATCGTCCAGTTCATCCCAAATTACCAGCTCTCATCCGCTTCTCTTCC
TCCAAATCGTCGGCGTTT-----------------------------------CTTGATCGACGAGGGCATGGCGACGAC
GGTGGACTGGCGCAGCTATAGGCCCGATCTTCCGGCGGCGATGTACCACATGGTGGACGGCAGAGACCAGGTAATGCACG
CGTTCGCTCCGCCGACGGCGCAGGGCGCGGCGCCGACCATCTCCTTCTCCTTCCCCTGCCCCGGCGCGGAGCAGAGCGCC
GGCCTGCTTCGTGGCGCCAGCTACCTCACTCCCGCGCAAATCCTCCAGCTCCAGTCGCAGCTCCACCACGTGCGCCGGGC
GCCGGGCGCGGCCATGGCAGTGGCGGGGCAGCCCATGAAGCGGCACGGCGTTGCGGCGCTCCCGGCGCAGCCGGCGGCCA
AGCTGTACCGCGGCGTGCGGCAGCGGCATTGGGGGAAGTGGGTCGCCGAGATCCGCCTGCCCCGCAACCGCACCCGCCTC
TGGCTCGGCACCTTCGACACCGCCGACGAGGCCGCGCTGGCCTACGACGCCGCCGCCTTCCGGCTCCGCGGCGAGTCCGC
CAGGCTCAACTTCCCCGAGCTCAGGCGCGGCGGCGAGCACCACGGCCCGCCGCTCGACGCCGCGATCGACGCCAAGCTCC
GCTCCATCTGCCACGGGGAGGACCTGCCGCAGAGCCAGAGCAATGCGACGCCGGCGCCGACGCCGACCCTGACGCCGAGC
TCTTTCCCGGACGTCAAGAGCGAGCCAGGCTGCTCCGTCTCCGAGAGCTCGTCGTCGGCCGACGGCGAGGTGTCCTCGTG
CTCCGACGTCGTCCCGGAGATGCAGCTTCTTGATTTCTCGGAGGCTCCATGGGACGAGTCCCTGCTGCGCAAGTACCCGT
CGCTCGAGATCGACTGGGACGCGATCCTTTCTTGAACCGAGTTCATGCCCGATCCACAGCTCGTTCAAAGTGATTGCTTC
TGCTTTCGTTAGGCTCTTAGATAGGTTATTATGGGTTTGATCAAGTATTCTTGTGTAACATCAA----TCCCTGCTCTGC
TTGGTTTTTGAATGGCATTGCCAGGAAGGAGGTTTTATGTAGAAATTTTAAGTATGTCAT---GTAGTTTGTGATTCAAT
AAAGATACACTTTGGTA-TACTTGAAATTGCTATTGGCATGCGTTTTGTACTGCAGTACTTTTTTATATTGTTCAGAATA
GCATAACAGAGATGAGATGAAAGTTCTAATATAGGATGAGTTCTACAGTTGAATGGAACATGAATTAGTATAAAAGTTGC
AAATTTGTTCCTAAATGCATCAACTAACCTCAGGACTATGAAGTAAAAAAAAAATCC--CTTGATAGAAACTTGAAGATT
TTGATGTTCTTGCACGAATTTGACTTTCAGAGACGACACTGCATGAGCCGGTTTCCACATAAATCACCCTTGCACAAATC
TCTCTCAGTCTAGAGTCTTGGGGTTTGATACTTGTGGTGTCAAAAATAATTTTAATTTAGACAACATTCCACTAATTTCA
AATTCATATGATGTGTACACATTGCTATATTGCCGTTAATTTTAGCATT-AAGATTATGAATG-CAATTTTCCTTTTTGG
TAGGGATGTGTTTGCAAGGACCTGTGATAATTAAGCCTTTAGAGAACAATAAGGGACTTGACA-----AACAGTTTGAAC
ATGGCTTGGGAGATGTTGGAATTCTTGCTGGTTCGGCATTGCCGCTCTTGGTTCAGGCCAGGTAGGTTTAGCTATGATGT
ATCCCCTGTTCGGGTCGATC------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
--------------------S----------------------------------------------------------S
------------S-------------------------------------------------------------------
----------------------------------------------------------------------S---------
-----------------------------------S--------------------------------------------
---------------S---------------------S------------------------------------S-----
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----------------
------------------------------------S--------S-----------------S----------------
----S------S--------------------------------------------------------------------
--------------------------------------------------------------S-----------------
------------------------------------------------------S-------------------------
----S-----------SS--------------------------------------------------------------
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----------------------------S------------S--------------------S-----------------
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-----------------------------------------------------------S--------------------
-------------------------------------------------S------------------------------
------------------S--------------------S----------S-----------------------------
--------------------------------------------------------------S-----------------
--------------------------------S---S-------S-----------------------------------
------------------------------------------------------------------S---S---------
----------------------------S------S--------------------------------------S-----
S--S------------S-------------------S-S---------S-------------------------------
-----------------------------SS---------------S--------------S------------------
--S-------S----------------------------------------------------S----------------
--------------S--S---S----------S---------------SS---------S--------------------
-----------------------------------------------------------------------S--------
----S---S--S------------S----------------S-S---------S-------S-S----SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_229
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-------------------------------------------------GACTATCTCCCAAGCTCCGC-----------
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>reverse_1810
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-------------------------------------------------TGATCCACAGCTCGTCCAAA-----------
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