>input_sequence_68643
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----------------------------------------------------ATGGCGCGGCGGAGCGGCATGCTCCTCC
TACTCGCCGCGGCCGCCCTGCTTGCCCTCGGCGCGGGCGCCGCCGTGCCGCCGTCGTGCGAGCGCATCGAGTGCCCGGCG
TACGACGTGGTGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAAGGACGCCATGTGGGTGTCCACCGCGCCCATCGA
GGACATCTCGCTCGTCGACGCCACCCGCTCCGGCTTCCTCCAGTAAGCACGCCGCTCCCTTCGCCATT------------
-----------GCAGCAGTAGTGCGCCAGTGAAGCTCTCTTT-----TGGGCTTCACGTGGGCCTAAACAAATGGGCCTG
GGATAACAGTAACGGGCTTCGCTTGTTTGCATGGGCCAGGCTTTTCAAGTACATCCAGGGGAAGAACGCCTACAACGAGA
CGATCGAGATGACGGCGCCGGTGCTGACGCGGGTGGCGCCCAGCGACGGGCCCTTCTGCGTCTCCTCCTTCGTGGTCAGC
TTCTACGTGCCGGCGAAGAACCAGGCGGACCCGCCGCCGGCCGAGGGCCTGCACGTGCAGAGGTGGGCCGGGGCGAGGTA
CGCGGCCGTGCGCCGGTTCGGCGGCTTCGTGGCCGACGCCGACGTCGGCAAGCAGGCCGCGCTGCTCGACGCCAGCCTGC
AGGGGACCAGGTGGGCCGCCGCCGTGTCCGACGGCCGCAAGGCCGACCCGGCGTCCGAGTACACCGTGGCGCAGTACAAC
TCGCCGTTCGAGTTCAGCGGCAGGGTCAACGAGATCTGGATGCTCTTCGACACCATGGCCGCGTCTGACATGTAA-----
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>chr3D_1_TraesCS3D01G149000
TGGCGCTCCGCCGGCGACATGCTTCCTGTGAACAACCTTGATCCAAGCCGAGCTTTTTCTTTAGATCTACATCCACAGCC
TCCGAACAACCTAACTCATGATACCATTTGTTAGAATTAATCTGAAGCGCAAGTCGATCTATCGAGGATCAAGCAATCAC
ACAAGCACGACACCGAGATTTGTTAACGAGGTTCACCGATGTGGCTACATCTCCGGAGCCTAACTACGGGCGCTCCTCCC
CATGAAACCGCTACAATACCGCACCCCGGTCGCCTGGGCGCCGGCGCAATGCCGCCGGCTCCCCCGCGTGCCCGTGCTAT
TACATTGGCATAGTTACATCATGTGTCTAGCCCCACTATATATAAGAGGTCTACGATACAAGTGCCCTACTTGGACATGA
CTTTATATTCTGTCACACACCGTACGATTCTAAGTCCAACCGTAACCTATCTTGTATAATAATATTTGACACAACTCTAA
CAAACGAAACAATAGGATTTTGTTTCTAGCTTCAGCAGAGCGTGGTTGTGTTAAGAAGAAAGGGTATATACGTTCATCCT
GGCAGTAAAATAATTCAATAGAGAGGCCTCGAGCGTTCTACTCCCTCCATCCCATAATATAAAAACGGTTTTTTTACACT
AATATAGTGTCAAAAATGCTCTTATATTATAGGACGGAGGGAGTAAATTTTAACAGAAATACCAAGATAGTATTATCACA
CCTTCAGATATGACAGTGAAAATCATCTCAGAAACCACCAACCGATGCTTCTACTGTCTACGTGTGTCCCCTCTCCCCCG
CTTGCCAGTCTCGATCCTCAAGACCCGAACGATGACGGCCAAGTGCTCGAATCCCGTCGACGTGGAAGCACGGCCGCCGC
GG-------CCACCCTGAGCCGCGGCCGAGCCGTATTTATCCCACCACCAC-CAATCAATCCCCAGAGG----CACGCAC
GCACCCGAGCCCCACAATTCCCATCCCCCACTCCACTCCCCACCGAAAAACCATGGCGCGGCGGAGCGGCATGCTCCTCC
TACTCGCCGCGGCCGCCCTGCTTGCCCTCGGCGCGGGCGCCGCCGTGCCGCCGTCGTGCGAGCGCATCGAGTGCCCGGCG
TACGACGTGGTGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAAGGACGCCATGTGGGTGTCCACCGCGCCCATCGA
GGACATCTCGCTCGTCGACGCCACCCGCTCCGGCTTCCTCCAGTAAGCACGCCGCTCCCTTCGCCATT------------
-----------GCAGCAGTAGTGCGCCAGTGAAGCTCTCTTT-----TGGGCTTCACGTGGGCCTAAACAAATGGGCCTG
GGATAACAGTAACGGGCTTCGCTTGTTTGCATGGGCCAGGCTTTTCAAGTACATCCAGGGGAAGAACGCCTACAACGAGA
CGATCGAGATGACGGCGCCGGTGCTGACGCGGGTGGCGCCCAGCGACGGGCCCTTCTGCGTCTCCTCCTTCGTGGTCAGC
TTCTACGTGCCGGCGAAGAACCAGGCGGACCCGCCGCCGGCCGAGGGCCTGCACGTGCAGAGGTGGGCCGGGGCGAGGTA
CGCGGCCGTGCGCCGGTTCGGCGGCTTCGTGGCCGACGCCGACGTCGGCAAGCAGGCCGCGCTGCTCGACGCCAGCCTGC
AGGGGACCAGGTGGGCCGCCGCCGTGTCCGACGGCCGCAAGGCCGACCCGGCGTCCGAGTACACCGTGGCGCAGTACAAC
TCGCCGTTCGAGTTCAGCGGCAGGGTCAACGAGATCTGGATGCTCTTCGACACCATGGCCGCGTCTGACATGTAAC----
---------------TGGCTAGATCAATCAGTGAACTCGTATAT----GAGTGTCTTGTCTTTTAAGCTT-CTATATAAC
CGGACGAATAATGGTGGTGCCTTATAAACTGCTTAAGCGAAATAGTGA------ACTGTTTTGCGCTGTATGGACTTGCG
AGCAATAAAGTGCCTCTT-TTGGTGCAACAAACTGTTTGCCGTTTTGGCGGCCT----GTTGCTTTCTTTCGCATTTGAG
AAGATTGTTCCGATGATACGTTTCCTATAAATATCCCCGGCTATCACACCGGCGCTG-----------------------
--------------------------CAACTGAAGAATCAAACAGAGGAGTCGAGTCCAG-GTTTCTTCCGTCACCTCAA
ACAGAAACGGTGATTCTCACTACACCGAC-----TGCACTCTCTCTTGGAGCATCGCTACA---AACAGGGAGTGTC---
-TACGTGCTACCATCGACGTACAGTACTAAACATTTTGTGGCGCATGAGAAACGATAAATAGC-----------------
CGGCAGCTCATTTTTCTCTCCGTA--ACAGACGTGCGGCATGCAGGACCACGGGCACGGCAGGTC-----GTTTTTCTCT
CCGTAACGGACGTGCGGCATGCACGAGGA-CCCCCGATCTCCGCTCCCCGTGTGACCCGATCACTCAGCTCAAAGAGTCG
AAACAAACTGGGTGACACGTCCGCG------------CGCGCGCTCTGGCTGGGGCGAGCGCGAGCGGCATGGCGTGGGT
GCGCGTGCGGAGGCCCCCGCTGCTGCAGTCCAAGCTGCTCTGCCTCTCGCTGCTCTACCTCCTCACCACGCTCCCGCTCG
CGCTCTACGTCTCCTTCTCCGACCCCTCGCGCTGCCTGCCCCTCCA---CCTCCTCCTCCTCCGCCCCGCCCGCCCCTCC
CCTCCGG---CGACGCCGCTCTTCGAGTACCCGCGCGACTACGGCGTGCACAAGTACTCACTCCCCACCCCGCGCGCGCT
CTGCTCCGACCCGGCCGTGTTCTCAGGTCTCGGCCTCCACCGCCCGAAGAGATCGTCTCCGCTTTCTATAGAATCCGATC
ATTCGCACCATAACT
>chr3B_567
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------AAAATAATTCAATAGAGAGGCCTCGAGCGTTCTA----------------------------------------
---------------------------------------------AATTTTAACAAAAATACCGAGATAGTATTATCCCA
CCTTCAGATATTACTGTGAAAATCATCTCA-AAACCACCAACCGATGCTTCTACTGTCTACGTGTGCCCCCTCTCCCCCG
CTTCCCAGTCTCGATCCTCAAGACCCGAACGATGACGGCCAAGTGCTCGAATCCCGTCGACGTGGAAGCACGGCCGCCGC
GG-------CCACCCTGAGCCGCAGCCGAGCCGTATTTATCCCACCACCGC-CAATCAATCAACACAGA----CACGCAC
GCACCCGAGCCCCACAATTCGCATCCCCCACTCCACTATCCACC-AAAAACCATGGCGCGGCGGAGCAGCATGCTCCTCC
TACTCGCCGCGGCCGCCCTGCTTGCCGTCGGCGCGGGCGCCGCCGTGCCGCCGTCGTGCGAGCGCATCGAGTGCCCGGCG
TACGACGTGGTGGACAACGCCAACGGGTTCGAGATCCGGCGGTACAAGGACGCCATGTGGGTGTCCACCGCGCCCATCGA
GGACATCTCCCTCGTCGACGCCACCCGCTCCGGCTTCCTCCAGTAAGCACGCCGCTCCCTTCGCCATTGCCAGATCACGC
GCAACTTGCTCGCAGCAGTAGT--GCCAGTGAAGCTCTCTTT-----TGGGCTTCACGTGGGCCTAAACAAATGGGCCTG
GGATAACAATAACGGGCTTCTCTTGTTTCTATGGGCCAGGCTTTTCAAGTACATCCAGGGGAAGAACGCCTACAACGAGA
CGATCGAGATGACGGCGCCGGTGCTGACGCGGGTGGCGCCCAGCGACGGGCCCTTCTGCGTCTCCTCCTTCGTGGTCAGC
TTCTACGTGCCGGCGAAGAACCAGGCGGACGCGCCGCCGGCCGAGGGCCTGCACGTGCAGAAGTGGGCCGGGGCGAGGTA
CGCGGCCGTGCGCCGGTTCGGCGGCTTCGTGGCCGACGCCGACGTCGGCAAGCAGGCCGCGCTGCTCGACGCCAGCCTGC
AGGGGACCAGGTGGGCCGCCGCCGTGTCCGACGGCCGCAAGGCCGACCCGGCGTCCGAGTACACCGTGGCGCAGTACAAC
TCACCGTTCGAGTTCAGCGGCAGGGTGAACGAGATATGGATGCTCTTCGACACCATGGCCGCGTCTGACATGTAACTGTG
CAAGCTTGTTGCTGCTGGCTAGATTAATCAGTGAACTCGTATG--TAAGAGTGTCTTGTCTTTTAAGCTTTCTATCTAAG
CCGACGAATAATGGTAGCC---TATAAACTGCTGAAGCCAACTACTCCTAGTGTACTGTTTTGCGCTGTATGGACATGCG
AGCAATAAAGTGCCCC-T-TTGGTGCAACAAACTGTTTGCCATTTTGGCGGCCT----GTTGCTTTCTTTCGCGTTTGAG
AAGACTGTTCCCATGATACGTTTCCTATAAATATCCCCTGCTATCACACCGGCGGTGCTGCTAATTTTTTTTTTCTTTCC
ATGGACTGTTCTGCTGCTATTTGTCGCAGCTGAAGAATCAAACCGAGGTGTCCGAATCCAAGTTTCTTCCGTCAGCTCAA
CCAGAATCGGTGATTCTCACTACATCGACTGCAGTGCACTTTCTCTTGGAGCATCACTGGCTACAATAGGGAGTGTGTAC
GTACGTGCTACCACCGACGTGGCGACGTACAGTACGTACATAACATCGAACTCCCAGCCAGTTCCTTCAGCGATCGGTCG
CGGCAGCTCATTTTTCTCTCCGTATAACAGACGTGCGGTATGCAGGACCACGG------CAGGTC-----GTTCTTCTCT
CCGTAACGGACGTGCGGCATGCACGAGGACCCCCCGATCTCCTCTCCCCGCGTGACCTGATCACTCGGCTCAAAGAGTCA
AAACAAACTGGGTGACACGTCCGCCGGCCCGCCCGCCCGCGCGCTCTGGCTGGGGCGAGCGCGAGCGGCATGGCGTGGGT
GCGCGTGCGGAGGCCCCCGCTGCTGCAGTCCAAGCTGCTCTGCCTCTCGCTGCTCTACCTCCTCACCACGCTCCCGCTCG
CGCTCTACGTCTCCTTCTCCGACCCCTCGCGCTGCCTGCCCCTCCA------CCTCCTCCTCCGCCCCGCCCGCCCCTCC
CCTCCGG---CGACGGCGCTCTTCGACTACCCGCGCGACTACGGCGCGCACAAGTACGCACTCCCCACCCCGCGCGCGCT
CTGCTCCGACCCGGCCGTGTTCTCAGGTCTCAGCCTCCGTCGCCTCAAGATATCGTCGTCGATTTTTATAGAATCCGATC
ATTCGCACCATAACT
>chr3A_684
TA------------------------------------------------------------------------------
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---------------------------------------------AAATCTCACAGAAATTCCAAGATAGTATTATCACA
CCTTCAGAAATCACAGCGAAAATCATCTCAGAAACCACCAACCGATGCTTCTACTGTCTACGTGTGTCCCCTCTCCCCCG
CTTGCCAGTCTCGATCCTCAAGACTCGAACGATGACGGCCAAGTGCTCGAATCC-GTCGACGTGGAAGCACGGCCGCCGC
GGCCCGCGGCCACCCTGAGCCGCAGCCGAGCCGTATTTATCCCACCACCACCCAATCAATCGCCAGAGGCACGCACGCAC
GCACCCGAGCCCCACAAACCCAATCCCCCACTCCACTCCCCACC-GAGAACCATGGCGCGGCGGAGCGGCATGCTCCTCC
TGCTCGCCGCGGCCGCCCTGCTCGCCGCCGGCGCGGGCGCCGCCGTGCCGCCGTCGTGCGAGCGCATCGAGTGCCCGGCG
TACGACGTGGTGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAAGGACGCGATGTGGGTCTCCACCGCGCCCATCGA
GGACATCTCGCTCGTCGACGCCACCCGCTCCGGCTTCCTCCAGTAAGCACGCCGCTCCCTTCGCCATTGCCA--------
-------------AGCAGTAGT--GCCACTGACTGAAGCTATCTTCCTGGGCTTGACGTGGGCCTAAACAAATGGGCCTG
AGAGAGCAATAACGGGCTTCGCTTGTTTGTATGGGCCAGGCTTTTCAAGTACATCCAGGGGAAGAACGCGTACAACGAGA
CGATCGAGATGACGGCGCCGGTGCTGACGCGGGTGGCGCCCAGCGACGGGCCCTTCTGCGTCTCCTCCTTCGTGGTCAGC
TTCTACGTGCCGGCCAAGAACCAGGCGGACCCGCCGCCGGCCGAGGGCCTGCGCGTGCAGAGGTGGGCCGGGGCGAGGTA
CGCGGCCGTGCGCCGGTTCGGCGGCTTCGTAGCCGACGCCGACGTCGGCAAGCAGGCCGCGCTGCTCGAGGCCAGCCTGC
AGGGGACCAGGTGGGCCGCGCCCGTGTCCGACGGCCGCAAGGCCGACCCGGCGTCCGAGTACACCGTGGCGCAGTACAAC
TCGCCGTTCGAGTTCAGCGGCAGGGTGAACGAGATATGGATGCTCTTCGACACCATGGCCGCGTCCGACATGTAACTGTG
CAAGCTAGCCGCTTGTTAGACTA--AACCAGTGAGCTCGTATATATAAGAGTGTCTTGTCTTTTAAGCTT-CTATGTAAG
CCGACGAATAATGGTAGCG---TATAAACT----------------------------------------------TGCG
AGCAATAAAGTGCCTTTTCTTGGTGCAACAAACTGTTTGCCATTTTGGCGGCCGGCCCGTTGCTTTCGTTCGCATTTGAG
AAGATTGTTCCGATGATACGCTTCCTATGAATGTCCCCGGCTATCACACTGGCGCTGAGCATGGGGAAGGAGCAGGGCAA
GCCGGATCCTTCCTATTTGCTGCT--------------------------------------------------------
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-----------------------------GACGTGCGGCATGCAGGACCACGG------CACGGCAGGTGGTTTTTTACT
CCGTAACGGACGTGCGGCATGCACGAGGACG-CCGGATCGCCTCTTCCCGTGTGACCCGATCACTCAGCTCCAAAAGTGG
AAACAAACCGGGGGGCACGTACGTACGCCAGCCACTCCGCCGATCCGCCCGG------------GCGGCATGGCGTGGGT
GCGCGTGCGGAGGCCCGCGCTGCTGCAGTCCAAGCTGCTCTGCCTCTCGCTGCTCTACCTCCTCACCACGCTCCCGCTCG
CGCTCTACGTCTCCTTCTCCGACCCCTCGCGCTGCCTGTCCCTCCACCGCCTCCTCCTCCTCCGCCCCGCCCGCCGCTCC
CCTCCGCCGCCGACGCCGCTCTTCGAGTACCCGCGCGGCTACGGCGCGCACAAGCACGCCCTCCCCGTCCCGCGCGCGCT
CTGCTCCGACCCGGCCGTCTTCTCAGGTCCCGGCCTCCGTCGCCCGCGGAGATCATTGCCGCTTTTCAGAGGACCCGATC
GTTCGC---------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------
-----------S--------------------------------------------------------------------
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-----------------------S-------------------------------------S------------------
--------------------------------------------S-----------------------------------
--------------------------S-----------------------------------------------------
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----------------------SS--------------------------------------------------------
--------S--------------------S--------------------------------------------------
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--------------------------S--------S--------------------------------------------
------------------------S--------------------------------------------------S---S
-S-------------S-S-SSS-----------S----S--S--S-SS---------------------------S----
-----------------------------------------S--------------------------------------
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----------------------------S--------------S----S---SSSSS-SS--------------S-----
S-----S-----------------S---------------S--------------S--SSS-----S---------S---
-------------S------SSS-SSS--S-SSSSS-SSSSSS---SSS-SS-SSSSSSSSSS-----------------
-----------------------------------------------------SSSSSS---------------------
------------------------------------------S-------------------------------------
------------------------S-------------------------------------------------------
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----------------------------------------------S----------S----------------------
--------------------------------------SS-----------------S-------S--------------
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>forward_85
-----------------------------------------------------------------TCTACATCCACAGCC
TCCGA---------------------------------------------------------------------------
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>reverse_1796
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-----------------------------------CTGGATGCTCTTCGACACCA-------------------------
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>forward_180
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ACAAGCACGACACCGAGATT------------------------------------------------------------
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>reverse_2265
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------------------------CCGACTGCACTCTCTCTTGG------------------------------------
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