>input_sequence_68642
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-------------------------------------------------ATGGTCGATGAGACCAAGTTCCTCCTATGGC
TGCTGCTCTTGATCAGCGCATCGCTGTGCCACGCTTCCGAACTCGACATCCAGTGTCTGAAATCCGTACAAAAATCAGTG
GTCGACCCAAACGGCATCCTCAGATCCTCTTGGAAATTCAACAAGAACGGCCGCAGCGGCTACATATGCGGATTCACCGG
CGTCGAATGCTGGAGCCACGACGAGAACAGGGTGCTCTCTCTGCGCCTGCGCAACTTGGGACTCCAAGGTTCGTTTCCTC
AAGGCCTACATGACTGCACGAGCATGATCGCGCTGGACCTCTCAGGCAACGGTTTCTCAGGGCCGATCCCTTGGCGCATC
GCACACGACGCGCCGCACCTGTCATACCTGGACCTCTCGAACAACAGTTTCTCCGGCGAGATCCCGGACAGCATCGCCAA
CATGGTGTACCTCAACGTGCTCAACCTCGAGTACAACCAGCTCGACGGCCAGATTCCGGAGCGGTTCAACGCGCTTGGCC
GGTTAACGGCGTTCAGCGTCGCCGATAACTTGCTGTCGGGGCCTGTTCCTGCTCTGCTGCGGAAGTTTCCGGCCTCGCAT
TTTGTTGGTAACCGAGGGCTCTGCGGTGCACCGCTGGACGAGTGCCCTGGGAAGATATGGGGATTGGTGCGGATCAGGCA
GATCAACGACGAGTCTAGTATCGGAGCGGCTGTCGGGTTCGTCGTGGGGTTCGTGGCGGCCTTCTACTCCCCGGGCTGGG
TCGTCTTCTCCAAGAGGCTGCGTGCTTACGGCTTCCGCGTATGA------------------------------------
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>chr3B_1_TraesCS3B01G433700
GGATTGCACTCGACACCTTTTACTGGGGGTTCTTCGTTGCCTGTTGGACTTCTTATCTTCTAGGGTAGTGAGCTTGGGTA
GGACGTATAGGACAGGCCTATGACCCTATCACAGGTCTGTATCCTCATTAGGAGGCATGCTGGAACGACACGCAGGCGGC
GGCTGGCTTTCTCCTACCCCCAATTCCCCTTTCTCCTTCCCTAGAACCCTAGCTTGTATCCTAAAATTCAGTCTGTAATC
GAAGAATTATCCTGAACCTTACATCAAGAGCGTAATATAGTTCTTGTTTGATCTA----AAACCACGGCAAGAGTT-TGG
AACGGATGGAGTAGTTCAGAAGTGGGCCCATGCTCCTTGTTAGAATGTCATGGATGGCCAGTAGCATCTTCACGTTATCA
TA-TAGTTGCTGCTCAGTCGTCAACTTCTTTTTCCAAATAACATGTCATTGACATTTTCCTAATGCAAGACACGGTTGCT
TAAAACTTGCTCTTTCCAATAT---TATTATCTGATAAAAGCTCTACTTCCAATTTCCCCGATGCTGCGTGTCCATGTCT
CATGGCTAGGTAGTTAACCATCTCGTGCTGACATTTGACCTTGTTGGTTCTTGCCCAACTTCCGCTGCCTTCTTGCAATG
TGCCAACGACGACAAGAATTGAGGGATTAGCACAAGCAAAGCGGTGCTCCGGTGCAGGGATTCTCTTTTTTCTAAGAGCT
CTGATCGTTCGGTCATTCCGGGCGGAGGTTTCTTGTTTGGCTGGATCAATCGGTGAGTATCTGAAACACCTCATCTTGTC
TAAGAAGTACCAATGGATGTAACCAAACCAACAAAGCAAGTACGCATGCATTACAATTTGCATCTTTGGAGGCTGCTTTG
TGATGTCTGTGAGCATATTACTTCTTCAGTTCTTCTGTTTTCAAGTATAATGTTAGTGTTAAATGTTCTTACACAAGCTT
TGATTTGATCAGGTGGCGCTTGAATAGTCTCTTCTACTCCACGATCGCGATGGTCGATGAGACCAAGTTCCTCCTATGGC
TGCTGCTCTTGATCAGCGCATCGCTGTGCCACGCTTCCGAACTCGACATCCAGTGTCTGAAATCCGTACAAAAATCAGTG
GTCGACCCAAACGGCATCCTCAGATCCTCTTGGAAATTCAACAAGAACGGCCGCAGCGGCTACATATGCGGATTCACCGG
CGTCGAATGCTGGAGCCACGACGAGAACAGGGTGCTCTCTCTGCGCCTGCGCAACTTGGGACTCCAAGGTTCGTTTCCTC
AAGGCCTACATGACTGCACGAGCATGATCGCGCTGGACCTCTCAGGCAACGGTTTCTCAGGGCCGATCCCTTGGCGCATC
GCACACGACGCGCCGCACCTGTCATACCTGGACCTCTCGAACAACAGTTTCTCCGGCGAGATCCCGGACAGCATCGCCAA
CATGGTGTACCTCAACGTGCTCAACCTCGAGTACAACCAGCTCGACGGCCAGATTCCGGAGCGGTTCAACGCGCTTGGCC
GGTTAACGGCGTTCAGCGTCGCCGATAACTTGCTGTCGGGGCCTGTTCCTGCTCTGCTGCGGAAGTTTCCGGCCTCGCAT
TTTGTTGGTAACCGAGGGCTCTGCGGTGCACCGCTGGACGAGTGCCCTGGGAAGATATGGGGATTGGTGCGGATCAGGCA
GATCAACGACGAGTCTAGTATCGGAGCGGCTGTCGGGTTCGTCGTGGGGTTCGTGGCGGCCTTCTACTCCCCGGGCTGGG
TCGTCTTCTCCAAGAGGCTGCGTGCTTACGGCTTCCGCGTATGATCGATCCGCGTGTTTTGTCTGTTGTCAA--------
---CAACTCCGACAGCAGATCTGTTTTGACTTTTTTTTGGGTGATTTATTTTGTCTCCCGTTGAAAAAGTTGGCTTTCAC
CCGATGAGCCTGTCAAGCAGGCAAAAATAACAAATTTGACCTGAAAGTATTTCACAAACTAAAGTATTTTTTAAAATATT
TCACACCGCTGACCATTTTATACAGCGCCTGACAACAAGGCGTCACACCCTACCGTGCAACTCCTTAGAGTTAGGCGCTG
CACAGTGTAGTGCAACTCCTTAGTGCTAGGCGCTGCACAGGTACGACGTTTAAGTGTTAGGCGCTGCACAGTAAAATGCA
GCGCCTTGCTGTCAGGCGCTGCACACTAAGAATCAACTGAGTGAAATACTTTCAAAAACAGTTTAGTTTATGAAATAGTT
TGGCCCTCATATCAAATCTGTCTCTTTTGCCTGTCAAGCAAACCAGTTGAAACGGCAAAGCGGCGCACGCGATCGATTGC
ATCCGGTTCTGGGCACTGCTTGACTCATTCCTTTCTGTTTGA---------------------------TTGATTCGTTA
ACGAAAC--TTGAGAGTTTCTACACCACCCGTGAGGGCACTGCTGTCTGCTGCACTACCATGTACAGTCCAGTACAGTAC
CTTTGAGCTGCCCAGGCTAGAGGATGGGCAGGGGCGGAGCCAGCGTTGTGGCGTTGGGTTCATGATCTTCTGGTTTGTGG
ACAAGCTAATACATCTGAAGTTAACACTATGGCTCAAATTATTCATCATTTTTGTGTTATTTCAGGTCAAACTCCTAACT
AGTCAAAATCCACTATTCTTTTCAGTGCCCATGTTAGTCAAACTGTCATTGCTGATATTAAAACCATTTTTTCTGTTCCT
TCCATGGATAACAGCTTTACTCATTTGGGGCACCCTCTCATTCTTTCTGCTAAAAATAGAGTTGTTGCTTATAACTTTGT
TCTTGACAAATTTATGGCTAAGCTTCATGCTTATAAGGCTAACA
>chr3D_277
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------------------------------------ATAGTTCTTGTTTGATCTAGCTAAAATCACGACGAGAGTTATGG
AACAGATGAAGTAGTTGAGAAGCGGGCCCATGCGCCTTGTCGGAATGTCACCAATGGGCAGTAGCATTCTCGCGTTATCA
TAGTAGTTGCTGCTCAGTCGTTGACTTCTTTTTTCAAATAACACATCGTTGACATTTTCCTAATGCAAGACACGGTTGCT
TAAAACTTGCTCTTTCCAATATTAATATTATCTGATAAAAGCTCTCCTTCCCATTTCCCCGATGCTGCGTGTCCATGTCT
AATGGCTAGGTGATTAACCATCTCGTGCTGACATTCGACCTTGTTGGTTCTTGCCCAACTTCCGCTGCCTTGTTGCAATG
TGCCAACGGCGACAAGAATTGAGGAATTAGCACAAGCAAAGCGGTGCTCCGGTGCCGGGATTCTCTCTTTTCTACGAGCT
CTGATCGTTCAGTCATTCCGGGCGGAGGTTTCTTCTTTGGCTGAATCAATCGGTGAGTGTT-----CACCTCATCTTGTC
TAAAAAGTACTAATGCATGGAACTG----------------ACGCATGCATTACAATTCGCATCTTCGGAGGCTGCTTTG
TGATGTCTCTGAGCACATTACTTCTTCAGCTGATCTGATTTCAAGTATAGTGTTAGTGTTAAATGTTCTTACACAAGCTT
TGATTTGATCAGGCGATGCTTGGATAATTTCGTTCCCTCCACGATCGCGATGGCCGATGATACCAAGTTCCTCCTGTGGC
TGCTGCTCCTGAGCAGCTCATCGTTGTGCCACGGTTCTGAGCTTGACATCCAGTGCCTGAAGTCCGTACAAAAATCAGTG
GCCGACCCAAACGGCATCCTCAAATCCTCTTGGAAATTCAACAAGAACGGCCGCAGCGGCTACATATGCGGATTCACCGG
CGTGGAATGCTGGAGCCACGACGATAACAGGGTGCTCACTCTGCGCCTGCCCAACTTGGGACTCCAAGGGCCGTTCCCCC
AAGGCCTCCATGACTGCACGAGCATGATCGCGCTGGACCTCTCAGGCAACGGTTTCTCAGGGCCGATCCCTTCGCGCATC
GCACACGATGCGCCGCACCTGTCGTACCTGGACCTCTCGAACAACAGCTTCTCCGGCGAGATCCCGGACGGCATCGCCAA
CATGGTGTATCTCAACGTGCTCAACCTCGAGTACAGCCGGCTCGACGGCCAGATTCCGGAGCGGTTCAACGCGCTTGGCC
GGTTAACGACGTTCAGCGTCGCGGACAACCTGTTATCGGGGCCTGTTCCTTCTTTGCTGCGGAAGTTTCCGGCCTCGCAC
TTTGCTGGTAACCGTGGGCTCTGCGGTGCGCCGTTGGACGGGTGCCCTGGCAAGAGATGGGGATTGATCAC---------
GATCAACGACCAGTCTACTGTCGGAGCGGCTGTCGGGTTCGTCGTGGGGTTCGTGGCGGCTTTCTACTTCCCGCACTGGT
TCGGCTTCTCCGGGAGGCCCCGTGCTTGCAGCCTCCGCGTATGATCTTGCCACCTGTTCTGGAACTTTGTCTGACATTAG
CGGCAACTCCAACAGCTATTCTATT---------------------TATTTTGTCTACCGTTTGAACAGTTATCTTTCAC
CCGATGCGCAGTATACAAGTCAACTTGGCATGTGCCGCGTGCTGTTGCTTGCAATGGGAAATGCATATTTCAACTCTTGT
GCAATGGCGTGAGTTGTGATCATAAT------------------------------------------------------
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--------CTAACCGAAGCAGCAGAAAAAAAATCAAATGTTAGCTTTTGATGTACGTACTGATGCGCGCCCACTACCCGA
AATCAAG-------------------------GTCAAGCAAACCAGCTGAGACGGCAAAGCTGCGCACGCGATCGATTGC
TTCCGGTTCTGGGCACTGCTTGACTCATTTCTTTCTTTTTGAGCAAAGGGACTACCCGCCCGCAGATTCTTCATTCGTTA
ACGAAACAGTTGAGAGTTTCTACACCACCCGTGAGGGCACTGCTGTCTGCTGTACTACGAC----------GTACAGTGC
CTTTGAGCTGTCCAAGCTAGAGGATGGGC---------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------S----S-S----------
---S----S-------S-----S----------S------SS--------SSS----S---------SS--S--------
---------------------SS----------S---------SS--S--------------------------------
---------------------------------------------S-----S----------------------------
S----------SS----------------------S-----------------------------------S--------
--------S---------------S------------------------------S----------S-------S-----
----------S-----------------------S--------S--------------S-SSSSSS--------------
---S------S----S---S---SSSSSSSSSSSSSSSSSS-----------------S-------S-------------
--------S------S-------------S-SS----S-----------S------------------------------
-------------S-SS-----S---S-S--S-SSS-----------------S------S--------------S----
--------S---S----S-----S---------S---S--S--S-----------S-----S------------------
-S--------------------S---------------------------------------------------------
---S--------------------S------------S------------S------------------SS----S--S-
-------S----------------------------------------------------------------S-------
--------S--------------S-----------------------S---------------------S----------
---------S-------------------------S--S-----------------------------------------
--------S-------------S--S---S--S-S---------------S--S-------------------------S
----S---------S--------------S---S------S---------S----S----------S-SSSSSSSSSSSS
----------S------S-S----------------------------------------S-------S----SS----S
---S-------SS-----SS-------S-S--S-------------SSS--S-S----S--SSSS--SSSSS--------
----------S-----SSS---S--SSSSSSSSSSSSSSSSSSSSS----------S-----SS--S----SS-------
------S--SSSSS-SSSSSSS-SSSSSS-SSSSSSSSSSSSSSSS-SS-SSS-SSSSSS-SSSSSS---SS-SSS-SS-
S--SSSSSS---SSSS-SSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS--SS-S-SS--S---S-SS--S------S--SSS-SSS-SSS-SS-SSS--S-S-SS-SSSSSSSS-SSSSS
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S---S----------S------------------
S----------------------------S------S----------------------------------S--------
----------------------------------------------------S-----S-SSSSSSSSSSS-------S-
----------S---S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_196
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----------------CCCCCAATTCCCCTTTCTCC--------------------------------------------
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>reverse_2131
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--------------------------------------------------TAAGTGTTAGGCGCTGCACA----------
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