>input_sequence_68624
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-----CTAGCTAAGCCACACA-CCCACCACACAGACGTGCCAAGCACAGTACAGGGAGCGGAGCGGAGCCATGAGCAAGG
---------ACAGGCACGAGCACCACCTGCGGCGCTGCTGCGGCGGCCTCGCGGCGTGCCTCCTGTTCCTGGTCGTCGCC
GTCGCGGTCACCGCGCTCGTCGTCTACCTCGCGCTCCGCCCCGCCAAGCCCTCCTTCTACCTGCAGGACCTGCAGCTCCG
CTCCGTCAGCCTCGGGGACCCGTCCCTGTCCGCCACCGCTCAGGTCACGCTCGCCTCCCGCAACCCCAACGACCGCGTCG
GCGTGCTCTACCGGCGCCTCGACGTCTTCGTCACCTACCGCGACGAGCCCGTGACCGTGCCGGTGTCCTTGCCGCCCGCG
TACCAGGGCCACCGGGACGTCACCATCTGGTCCCCCGTGCTGTCCGGTGAGTCCGTGCCGGTGGCCGGGTTCGTCGCCGA
CGCCATGAAGCAGGACATCGCCGCCGGGTACGTGGCGCTGCAGGTCAAGGTCGACGGCCGCGTCCGGTGGAAGGTCGGCA
GCTGGGTCTCCGGCAGCTACCACCTCTTCGTCAGCTGCCCTGCCGTGCTTGCCGCCGGCCCCGGCGGTGTCCCGCCCGGC
GCTGG---TGGCCCCAACGGCACCGCCGGCCGAGCCGTCGCGTCGCTGAAGTTCACGCAGCCCACAGGGTGCACCGTCGG
CACCTGAAGGAAATTACGTAC------------------------TAAGTA-------GCGGTTTAATTTTATGCTTATG
TCTCGTGTAGTCGTGTAACGGGGAGAATAAAATGTACTTC----AATTT-------------------------------
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-------------------------------
>chr5B_1_TraesCS5B01G498200
ATGGCCACCACGTCCCGCTTTGGCTTTGGTTCCGACGAAAAAGACTCGACGCCTCTTCCTCGACCTCATAGAGCTCTCCG
ATCGGACCGCTCCTTCTCTAGTCCCCGTTGCTTTCACGGGGAAGCAGCGGACAGTGACCCCCCTGCTGGACGCGGCAACA
CTCAGGGTCTACCTACCACGGGGGTGGCACCGGGTGATGCAGGTGCAGGTATACATA-GGTACGATAGAGAATAGAGTTG
ACACTTTTAGTATTAGGGCATCTGCTAGAGACGCTCTTATGGAGCATCCCGAATAACGACCATTAATTTAATTATTTTAG
AGCACCATCGGTTTGAAAAAGATTGCCCCCCACATCACAATTAAAACAAA----------------CTTGCTCAGCAAAC
GACCATCAATTCAAATCGGGTACTTGTGTA-------TACCGGGTCATCTGGTCGATCTGAAAAACTACCCCAGGATCCA
TCAATCAAAACATAAAAGGCTCATTACACTATCCCT---------------------------AGGATCAACATGAGTGT
TTGACCTGGGTATACTTTTTTCGTGTTTTCAGGTATCTCACACGTCTACAGGCCACAGAAAGGACGACGTACCCGCAGTT
CACGGAGCTGGTTGGTTTCGAAAATTTCTCAAGACGTGTCGCGTGTGTATAGATTGTAGGCAGGCGCAGAT---------
-GCTTGGGTTGTGGTGGGCGTGGCGTGTGTGTCTTGCATCTGATTGGGTTCTACAGCTTTGTATCTGTATAATTGAGACT
ACAAT---------------------------------------------------------------------------
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-----------CGTACAAGGCTCACCAGCACATGGTCAAAC-AAAAAACACGAATCTCAAAGCGCATGCCGCAAGACCCC
AACGGAGGTACGCGCCG-----ATCGAGGTGGCAGAAGAATCTTCTTCGGTTGAGACGTTGCTT----------------
----------------TCCCTGGGCCTCCTCCCTG-TCCCAAGATCCAACCCAGATGCACTGTAATCGTTGGCTCG----
---TACCTACCGTTGCTTGATTTCGAAGCGCCCGATCACTC------------ACTCACTCAGTGAAGGGAGCTACTCCA
CTCCACTAGCTAAGCCACACA-CCCACCACACAGACGTGCCAAGCACAGTACAGGGAGCGGAGCGGAGCCATGAGCAAGG
---------ACAGGCACGAGCACCACCTGCGGCGCTGCTGCGGCGGCCTCGCGGCGTGCCTCCTGTTCCTGGTCGTCGCC
GTCGCGGTCACCGCGCTCGTCGTCTACCTCGCGCTCCGCCCCGCCAAGCCCTCCTTCTACCTGCAGGACCTGCAGCTCCG
CTCCGTCAGCCTCGGGGACCCGTCCCTGTCCGCCACCGCTCAGGTCACGCTCGCCTCCCGCAACCCCAACGACCGCGTCG
GCGTGCTCTACCGGCGCCTCGACGTCTTCGTCACCTACCGCGACGAGCCCGTGACCGTGCCGGTGTCCTTGCCGCCCGCG
TACCAGGGCCACCGGGACGTCACCATCTGGTCCCCCGTGCTGTCCGGTGAGTCCGTGCCGGTGGCCGGGTTCGTCGCCGA
CGCCATGAAGCAGGACATCGCCGCCGGGTACGTGGCGCTGCAGGTCAAGGTCGACGGCCGCGTCCGGTGGAAGGTCGGCA
GCTGGGTCTCCGGCAGCTACCACCTCTTCGTCAGCTGCCCTGCCGTGCTTGCCGCCGGCCCCGGCGGTGTCCCGCCCGGC
GCTGG---TGGCCCCAACGGCACCGCCGGCCGAGCCGTCGCGTCGCTGAAGTTCACGCAGCCCACAGGGTGCACCGTCGG
CACCTGAAGGAAATTACGTAC------------------------TAAGTA-------GCGGTTTAATTTTATGCTTATG
TCTCGTGTAGTCGTGTAACGGGGAGAATAAAATGTACTTC----AATTTTGGCATTAACAATTGCAATTTGTATTTCTTT
GCCGTCGCATCATTTGATCTATCTATGTGTCGTTAAGAACGGGCATATATAAGTTCTTCCGAACGTTTAAAATGTAAATG
GTGCAGCACATATAAATTCTCCCGAATGGTTTAATCTTCATCTTATGTCTCATGTATCGGGAGAATAGAATTTAATTCAA
TTTTTAAACGGTCACTTTAGTGCTAGAACTTGTGGCATACATTGAGGTGGTGCAAAAACTTGGTTCGGACGTGCAAATAC
GGTGCTAATCATGTTTGTATACGTCCGCAACACTGACGAGGCCTGCCAGCATGGCGTAGGACCTGTTGTCTGTGACCAAG
TAATGAAGACAAGGCGTGTGGTT--TTTTTCCTTTTTCCTAGAAACCCCCTTGTCTTTTATACTTTTTT-CACCAAAAAG
ACCCTGA-GAGGCGGGTCCTAGCTGTCAGCAGC-AAAAATAATAATTGAACAGAAAAAAGGTGCGCTTAGGTTTCAAACC
AGTGACCTTCAATT-AACGTGTCCGCTGCGAACCACCTAACAAAAATTATGCTCGTCGTCTGAAGAGGATACACAACCTT
ATATTCTTGAATATTTTTAGGTGAATATTCTTTAATTAAACAACACAAATTTGCAAAGGTTTGTTACTCTTTACG-TTTT
-TTTAGACAATGCTACAATTTACGTCTATAACAGAACGTGCTCATGGGCCAAAACTGACAACAGTTTGTCAGTTAGTGTG
GCCTATTTTTAATATGTTACTATTTTATTTTTATTTTTTGCAGTTTGTAATAAAAAAT---AATTATAACTATAAATAGC
ATACATAAAA--------TTTTAATTACGTATTCATTTGAGGAACAATAGTCTTTGTACATATATTTATATTTTTAGTTA
TATAAATTCTTTTTTTGAAAACACACAAACTTTATTAGAAAACATCT---CATAAAAAAACCTTTGTTAAAATCGCATGA
GCACTTTTAAAACAAATCAATTCTTTTAAAG
>chr5D_145
--------------------------------------------------------------------------------
----------------------------------------------------------------GCTGGACGCGGCGGAA
CTCAAGGCCTACCCGCAGT---GGTGGTACCGGGTGATGCAGGTGCAGGTATATGTAGGGTACGATAGAGAATAGAGTTG
ACACTTTTAGTAT-AGGGCATCTGCTAGAGACGCTCTTATGGAGCATCCCGAATAACAGCCATCAGTTCAATTATTTTAG
AGCATCATCGGTTTAAAAAAGATTGCCCCCCACATCACAACTAAAAAAACTATAGCTACAAAAAACCTTGCTCAGCAAAC
AACCATCAATTCAAATCAGGTACTTGCGTCATTGACGTACCGGGTTATCTGGTGGATCTGAAAAACTACCTCATGATCCA
TCAATCAAAACATAAAGGGCTCATCACACTATCCG---------------------------CAGGATCAACATGAGTAT
TTGACCTGGGTATATTTTTTTCCCG-TTTCAGGTATCTCACATGTC--------ACAGAAAGGACGGCGTACCAGCAGTT
CACGGAGCTGGTTGGTTTCGGAAATTTCTCAAGATGTGATGCGTGTGTATACGTTGTAGGCATGTTTAGGCGCATAGCGG
GGCGTGGGTTGTGGTGTGCCTGGCCTGTGTGTCGTGCATCCGATTGGGTTCTACATCTTTGTATTTGTATAATCT-----
---------ATACCTAATAATAAAGAGGTTATTGCTTTTGGTGGTATGTTACCGAAATTGCCCTTAAAGTTACAAAATAT
TACCCAGCGATGCCACATATAAGTGAT-------------------------------AAAAAACGTTTAACACAGGGGA
ATCCCGCCTGGACTGGCCCATGCAGTAGGAACCTTCTATACTGCGCTCAGCGCAGTGGGAGAAGACACGGCGCCCCTATT
TGGTCCAACCCATGTCCGGGAGGCCTGGTTTTAAATTTTGTTTTTA-TTTTTCGTTTTTGTTTTCCGTTTTCA-TTTTTT
ATACTTTAAATAATTTGGGAATCT-----AGTTTCGAAAATAAAAAAATTTAGAATTTTGAAATAAAATATTTAATAA-T
CATATTCTTTTGTGGATTCAGAAAATGTTCACGAGCCTTAAAAAATGCTTGCATGTTTCAAAAAATG----------TTC
ACGAAATCAAAAAAAATTCATGATGTTTTTAAAAAGTTTATCTATTAAACAATGTTAATGAAATTGAAAAACAATTCGCC
AATTCAAAAAATATTCATGAATTTAAAAATATCCTAAAATCTCTAAAACTGTTTGTGATTTGCAAAATAGTTTATTGATT
TAAAAAATGTTCGCTGATTCAAAATTT-ATCATGCATTTCCAAAAATGTTCGTTAAATCAAAAATGTTTGTTAAATCAAA
AAACTGTTTGTGAATTTCAAAAATTGTTGCACCAAACAATTTCCAAAAATATGTTCGTCAAACCTAGAAATATTGATCTA
TTCAAGAAAAATGATTTTAAAATGTTCGGAAATTTTTAAAAATGTTTGCAAATAGTACAAAATGTTCATGATTTTATAAA
ATATTCAAAAATCTGTAAAAATGTTCATA-------------------ATTTCAGATATGTTCATGAGTTTAAAAAATGT
TCATGATTTTCAAAAAAAA-TCACGATTTCATGATAATGAGAGTGGTCGTGTATCTAGGTGATGTAGGAAAATATGGTCA
TGGTCATGGCCATTGGGGATTATGATATTTTTCTTTCTCCCGTTGCAATGCACGGACCGTTT--------TTGCTAGTTG
AGGCTAAAAAATGTAAAAGGCTCACCTGCACATAGTCAAACAAAAAAACACGAATCTCAAAGCGCATGCCGCAAGAACCC
AACGGAGGTACGCGCCG-----GTCGAGTTGGCAGAAGAATCTTCTTCGGTTGAGACGTTGCTT----------------
----------------TCCCT-GTCCACCTCCCC-ATCCCAAGATCCAACCCAGATGCACTGTAATCGTTGGCCACCATC
TCC-ACCTACCGTTGCTTGATTTCAAAGCGCCGA-------------TCACTCACTCACTCACTGAAGGGAGCTACTCCA
CTCCACTAGCTAAGCCACACA-C---------AGCCACACCAAGCACAGTACAGATAGCCGAGAGGAGCCATGAGCAAGG
---------ACAGGCACGAGCACCACCTGCGGCGCTGCTGCGGCGGCCTCGCGGCGTGCCTCCTGTTCCTGGTCGTCGCC
GTCGCGGTCACCGCGCTCATCGTCTACCTGGTGCTCCGCCCCGCCAAGCCCTCCTTCTACCTGCAGGACCTGCAGCTCCG
CTCCGTCAGCCTCGGGGACCCGTCCCTGTCCGCCACCGCGCAGGTCACGCTCGCCTCCCGCAACCCCAACGACCGCGTCG
GCGTCCTCTACCGGCGCCTCGACGTCTTCGTCACCTACCGCGACGAGCCCGTGACCGTGCCGGTGTCTCTGCCGCCCGCG
TACCAGGGCCACCGGGACGTCACCATCTGGTCCCCCGTGCTGTCCGGGGAGTCCGTGCCCGTGGCCGGGTTCGTCGCCGA
CGCCATGAAGCAGGACATCGCCGCCGGGTACGTGGCGCTGCAGGTCAAGGTCGACGGCCGCGTCCGGTGGAAGGTCGGCA
GCTGGGTCTCCGGCAGCTACCACCTCTTCGTCAGCTGCCCTGCGGTGCTTGCCGCCGGCCCCGGCGGTGTCCCGCCCGGG
GCTGG---TGGCCCCAACGGCACCGCCGGCCGCGCCGTCGCGTCGCTGAAGTTCACGCAGCCCACAGGGTGCACCGTCGG
CACGTGAAGGAAATTACGTACTA-ACGTGCCTACGTGGAAGAAATTATGTACTAAGTAGCGGTTTAATTTTCTGCTTATG
TCTCGTGTAAC---------GGGAGAATAAAATGTACTTC----AATTTTGGAACTAACGATTGCAATTTGTATTTCTTT
GCCGTCGCATCAT--GATCTATCTATGGGCCGTTAAGAGCGGGCATATATAAGTTCTTCCGAATATTTAAAATGTAAATG
GTGCAGCATATATAAGTTCTCCCGAATGGTTTAGTTTTCGTGTCATGTCTCATGTAACGTGAGAATAAAATTTAATTCAA
TTTTTAAA------------------------------------------------------------------------
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-------------------------------
>chr5A_362
AAAAA---------------------------------------------------------------------------
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----------------------------------------------------------------ACCTTGCTCACCAAAC
AACCATCAATTCAAATCAGGTACTTGCGTCGTTGACGTACCGAGTTATCTGGTGGATCTGAAAAACTACCTCGTGATCCA
TCAATCAAAACATAAAAGGCTCATCACACTATCCCCAGGATCACGGTAAAAAAAACTATCCCCAGGATCAACATGAGTGT
TTGACTTGGGTATACTTTTTTCCTA-TTTCAGGTATTTCACACGCC--------ACAGAAAGGACGACGTACTAGTAGTT
CACGGATCTGGTTGGTTTCGAAAATTT-------------GCATGTGTATAGGTTGTAGGCCTGTTTAGGCGCATAGCGG
GGCGAGGGTTGTGGTGTGTGTGGCGTGTGTGTCGTGCATCTGATTGGGTTCTACAACTTTGTATCTGTATAATCCATATC
CATACCTCCATACCTAATAATAAAGGAGCTATTGCTTCTGCCGGTACGTTACCGAAATTGCCCTTAAATTTGCAAAATAT
TACCCTCCGATGCCACTTATAAGTGATTTTATTTTTGAGAAAAACTTAAAAATGATAAAAAAAACAGTTAACACAGGGGA
ATCCCGCCTCGACCGGCCCATGTTGTAGGAACCTTCTATACTGCGCTCAATGCGCTGGGAGAAGACGCAACGCACCTATT
TGGGCCAGCCCATGTCCAGGCGGCCTGGTTTTAAATTTTGTTTTTTGTTTTTCATTTTCGTTCTCCGTCTTCATTTTTTT
ATATTTTAAATAATTTGGGACTTCAAACAAGTTTCGAAAATTTAAAAAATGAGATATTTTAAATAAAATGTTTAATAATT
CATAAATGTTTTTGGATTCAGAAAATGTGCATGATTTTAAAAAAATGTATGCATATTTAAAAAAATGAAAATAAGTATTC
GCGAAAGCAAAAAATGTTCATTATGTTTTTTAAAAGTTCGCCTATTAAACAATGCTAATGAAATAGAAAAACAATTCGCC
AATTCAAAAAATGTTCGTGAATTAAAAATTATCCCAAAAATTCAAAAACTGTTTGTGACTTACAAAATAGTTCATTGATT
C-AAAAAAGTTCGCTGATTCGAAAAATGATCATGCATTTCAAAAAATGTTCATTAAAGAAAAAAA---------------
----TGTTTGTGAATTTCAAAAATTGTTCCACCAAACAATTTTAAAAAAGATGTTCATCAAACCTAGAAATATTATCCTA
TTAAAGAAAAATGATTTA-------------------AAAAATGTTTACAAATAGTATAAAATGTTCATGATTTTAGAAA
ATATTCGAAAATCTGTAAAAAGGTTCACAGATTTGACAAATGCTCATGATTTCAGATATGTTCACGAGATTAAAAAATGT
TCATGATTTTCAAAAGCTGTTCACGATTTCATGAAAATGAGAGTGGTTGTGTATCTAGGTGATGTAGCAAAATATGGTCA
TGGCCATTAGAGATTATGAA--------TTTTTTTTCTCCCGTTGCAAGTACGGGCGTTTTGCTAATTGGTTGCTAATTG
GGGCTACAGTGCGTAAAAGGCTCACCAGCACATGGTCAAACAG-AAAACACGAATCTCAAAGCGCATGCCGCAAGAACCC
AACGGAGGTACGCGCCG-----GTCGAGTTGGCAGAAGAATCTTCTTCGGTTGAGACGTTGCTT----------------
----------------TCCCT-GTCCACCTCCCCCATCCCAAGATCCAACCCAGATGCACTGTAATCGTTGGCCACCATC
TCCTACCTACCGTTGCTTGATTTCAAAGCGCCCGATCGCTCGCTCGCTCACTCACTCACTCTCTGAAGGGAGCTACTCCA
CTCCACTAGCTAAGCCACACA-CCCACCCCACAGCCATACCAAGCACGGTACAGAGAGCGGAGCGGAGCCATGAGCAAGG
---------ACCGGCACGAGCACCACCTGCGGCGCTGCTGCGGCGGCCTCGCGGCGTGCCTCCTGTTCCTGGTCGTCGCC
GTCGCCGTCACCGCGCTCGTCGTCTACCTCGTGCTCCGCCCCGCCAAGCCCTCCTTCTACCTGCAGGACCTGCAGCTCCG
CTCCGTCAGCCTCGGGGACCCGTCCCTGTCCGCCACCGCGCAGGTCACGCTCGCCTCCCGCAACCCCAACGACCGCGTCG
GCGTCCTCTACCGGCGCCTCGACGTCTTCGTCACCTACCGCGACGAGCCCGTGACGGTGCCGGTTTCGCTGCCGCCCGCG
TACCAGGGCCACCGGGACGTCACCATCTGGTCCCCCGTGCTGTCCGGGGAGTCCGTGCCCGTGGCCGGGTTCGTCGCCGA
CGCCATGAAGCAGGACATCGCCGCCGGGTACGTGGCACTGCAGGTCAAGGTCGACGGCCGCGTCCGGTGGAAGGTCGGCA
GCTGGGTCTCCGGCAGTTACCACCTCTTCGTCAGCTGTCCCGCCGTGCTCGCCGCCGGCCCTGGTGGCATGCCGACCGGG
---GGCGCTGGCCTCAACGGTACAGCCAGCCGCGCCGTCGCGTCGCTCAAGTTCACGCAGCCGACAGGGTGCACCGTCGG
CACATGATGGAAATTACGTGCCATACGTGCCTACGTGGAAGAAATTACGTA-------GCTTTTGATTTTTCTGCTTATG
TCTCATGTAAC---------GCGAGAATAAAATGTACTAGTTCAAATTTTGGAATTAATTATTGCAATTTGTATTTCTTC
GCCGTCGCATCAC--GATCTATGCATGGAAC---AACAACGGGCATATCTAAGTTCTTCTGAATGATTTAAAAT------
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-------------------------------
>chr2B_784
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---------------------------------------------------GAATCTCAAAGCGCACGCGCATGCAGGAC
CAACCGCCCAAGTTACTTGCCAATCGAATTGGCAGAAGAATCTTCTTCGGTTGAGACGTTTTTTTTTTGAGGAAAATTCT
TCGGTTGAGACGTTGCTTTCT-GGCCTCCACCCCCATCTTCCTACTTTTAAAGCCATTAA--------------------
--------------------------------------------------------CACCCACTGAAGAGAGTAGCTAGC
GCGCCACTGCACGCACACCTACC---------AGTCACACAGAGCAGAGTACAGAGAGCAGAGC-----CATGAACAAGG
AGAAGCATCACAGGAACGAGCACCTCCTCCGGCGCTGCTGCGGCGGCTTCGCGGCGTGCCTCCTGGCGCTGGTCGTCGTC
GTCGCATTCATCGCGCTCGTCGTCTACCTTGCGCTCCGCCCGACCAAGCCTTCCTTCTACTTGCAGGACCTGCAGCTCCA
CTCCATCAACCTCGGGGACCCCTCCCTTTCTGCCACCGCGCAGGTCACGCTCGCCTCCCGCAACCCCAATGACCGCGTCG
GCATCTTCTACAGGCGCCTCGACGTCTTCGTCACCTACCGCGACGAGCCCGTCACCGTGCCGATCTCCCTGCCGCCCATG
TACCAGGGCCACCGGGACGTCACCATTTGGTCCCCCGTGCTGTCCGGGGAGTCCGTGCCCGTGGCCGGATACGTCGCCGA
GGCAATGAAGCAGGACATCGCCTCCGGGTACGTGTCGCTGCAGGTCAAGATCGACGGCCGCGTCAAGTGGAAGGTCGGGA
CCTGGGTCTCCGGCAGCTACCACCTCTTCGTCAGCTGCCCCGCCATGCTCGCCGCCGGCCCCGGCGGCATGCCGCTCGGG
---GG---TGGCCCCAACGGCACCGGGG---GCGCCGTCGCGTCACTGAAATTCACGCAGCCGACAGGGTGCACCGTCGG
GACGTGA-------------------------------------------------------------------------
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-------------------------------
>chr2D_784
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---------------------------------------------------GAATCTCAAAGCGCACGCGCATGCAGGAC
CAACCGCCCAAGTTACTCGCCAATCGAATTGGCAGAAGAATCTTCTTCGGTTGAGACGTTTTTTTTAT-AGGAAAATTCT
TCGGTTGAGACGTTGCTCTCT-GGCCTCCACCCCCATCTTCCTACTTTTAAAGCCATTAA--------------------
--------------------------------------------------------CACCCACTGAAGAGAGTAGCTAGC
GCGCCACTGCACGCACACCCACC---------AGTCACACAGAGCACAGTACAGAGAGCAGAGC-----CATGAACAAGG
AGAAGCACCACAGGAACGAGCACCACCTCCGGCGCTGCTGCGGTGGCTTCGCGGCATGCCTCCTAGCGCTGGTCGTCGTC
GTCGCATTCATCTCGCTCGTCGTCTACCTTGCGCTCCGCCCCACCAAGCCTTCCTTCTACTTGCAGGACCTGCAGCTCCA
CTCCATCAACCTCGGGGACCCCTCCCTCTCTGCCACCGCGCAGGTCACGCTCGCCTCCCGCAACCCCAATGACCGCGTCG
GCATCTTCTACAGGCGCCTCGACGTCTTCGTCACCTACCGCGACGAGCCCGTCACCGTGCCGATCTCCCTGCCGCCCATG
TACCAGGGCCACCGGGACGTCACAATTTGGTCCCCCGTGCTGTCCGGGGAGTCCGTGCCCGTGGCCGGATACGTTGCCGA
GGCCATGAAGCAGGACATCGCCTCCGGGTACGTGTCGCTGCAGGTCAAGATCGACGGCCGCGTCAAGTGGAAGGTCGGGA
GCTGGATCTCCGGCAGCTACCACCTCTTCGTCAGCTGCCCCGCCATGCTCGCCGCCGGCCCCGGCGGCATGCCGCTCGGG
---GG---TGGCCCCAACGGCACCGGGG---GCGCCGTCGCGTCACTGAAATTCACGCAGCCGACAGGGTGCACCGTCGG
CACGTGA-------------------------------------------------------------------------
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-------------------------------
>chr2A_784
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---------------------------------------------------GAATCTCAAAGCGCACGCGCATGCAGGAC
C--------AAGTTACTTGCCAATCGAATTGGCAGAAGAATCTTCTTCGGTTGAGACGTTTTTTATC-GAGGAAAATTCT
TCGGTTGAGACGTTGCTTTCT-GGCCTCCACTCCCATCATCCTACTTTTAAAGCCATTAA--------------------
--------------------------------------------------------CACCCACTGGAGAGAGTACCTAGC
GCGCCACTGCACGCACACCCACC---------AGTCACACAGAGCACAGTACAGAGAGCAGAGC-----CATGAACAAGG
AGAAGCACCACACGTACGAGAACCACCTCCGGCGCTGCTGCAATGGCTTCGCGGCGTGCCTCCTGGCGCTGGTCGTCGTC
GTCGCATTCATCGCGCTCGTCGTCTACCTTGCGCTCCGCCCCACCAAGCCTTCCTTCTACTTGCAGGACCTGCAGCTCCA
CTCCATCAACCTCGGGGACCCCTCCCTCTCTGCCACCGCGCAGGTCACGCTCGCCTCCCGCAACCCCAATGACCGCGTCG
GCATCTTCTACAGGCGCCTCGACGTCTTCGTCACCTACCGCGACGAGCCCGTCACCGTGCCGATCTCCCTGCCGCCCATG
TACCAGGGCCACCGGGACGTCACCATTTGGTCGCCCGTGCTGTCCGGGGAGTCCGTGCCCGTCGCCGGATACGTCGCCGA
GGCCATGAAGCAGGACATCGCCTCCGGGTACGTGTCGCTGCAGGTCAAGATCGACGGCCGCGTCAAGTGGAAGGTCGGGA
CCTGGGTCTCCGGCAGCTACCACCTCTTCGTCAGCTGCCCCGCCATGCTCGCCGCCGGCCCCGGCGGCATGCCGCTCGGG
---GG---TGGCCCCAATGGCACCGGGG---GCGCCGTCGCGTCACTGAAATTCACGCAGCCGACAGGGTGCACCGTCGG
CACATGA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------
>chr5D_1992
--------------------------------------------------------------------------------
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----TAAACGGTCACTTTAGTGCTAGAAGTTGTGGCATACATTGAAGTGGTGCAAAAACTTGGCTTGGGTGTGCAAATAC
GATGCTAATCATGTTTGTATACGCCCGCAACACTGACGAGGCCTGCCAGCATGGCATGGGGCCCGTTGTTAGTGACCAAA
CAATGAAGACAAGGCGTGTGTAT--TTTTCCTTTTTTCCTAGAAACCCCCTTGTCTTTTAT--TTTTTT-CACCAAAAAT
ACCCTGA-CAGGCGGGTCCCAGCTATCAGCAGC-AAAAATAATAATTGAACGGAAAAAGAGTGCGCTTAGGTTTCGAACC
AGCGACCTCCAATTTAATGTGTCCGCTGCTAACCACCTGACAAAAATTCCGCTCGTTGTCTGAATAGGATACACAACCTT
ATATTCTTTAATATTTT-AGGAGAATGTTTTTTAATTAAACAACACAAATCTGCAAAGGTTTATGACTCTTTACG--TTT
-TTTAGACAATGCTACCATTTACGTCTATAACAGAACATACTCATGGGCCAAAACTGACATCAGTTTGTCAGTTACTGTG
GCCCATTTTTAATATGTTACTATTTTATTTTTATTTTTTGCAGTTTGTAAAAATATATTTAAATTATAACTATAAATAAC
ATACATATAA--------TTTTAAATATGTATATATTTGAGGAACAACTGTCTTTGTACATATATTTATATTTTTATAGT
TAA-------TTTTTTTAAAACATACAAACTTTATTAAAAAAACATCTGACAAAAAAA-CCCTTTATCAAAATCGCATGA
ACACTTTTAAAACAACACAATTC--------
>chr5A_1992
--------------------------------------------------------------------------------
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----TAAACGGTCATTTTAGTGCTAGAACTTGTGGCATACATTGAAGTGGTGCAAAAACTTGGCTCGGACGTGCAAATAC
GATGCTAATCATGTTTGTATACGTCTGCAACACTGACGAGGCCTGCCAGCATGGCATAGGACCCGTTGTCCGTGACCAAA
CAATAAAGACAAGGCGTGTGGTT--TTTTTCCTTTTTCCTAGAAACCCCCTTGTCTTTTATATTTTTTT-CACCAAAAAG
ACCCTGA-CAGGCAGGTCCTAGCTATCAGCAGCAAAAAATAATAATTGAACAGAAAAAAGGTGCGCTTAGGTTTCAAACC
AATGACCTCCAATT-AACGTGTCCGCTGCGAACCACCTAACAAAAATCATGCTCGTTGTCTGAAGAGGATACACAACCTT
ATATTATTTAATATTTTTAGGTGAATATTCTTTAATTAAACAACACAAATTTGCAAAGGTTTGTTACTCTTTACG-TTTT
-TTTAGACAAAGTTACAATTTA-GTCTATAACAGAATGTGCTCATGGGCCAAAACTGACAACAGTTTGTCAGTTAGTGTG
GCCTATTTTTAATATGTTAATATTTTATTTTTATTTTTTGCAGTTTGTAATAAAAATT---AATTATAACTATAAATAAC
ATACATATAA--------TTTTAATTATGTATTCATTTGAGGAACAATATTCTTCGTACATATATTTATATTTTTAGTTA
TATAAATTCTTTTTTTTAAAACACACAAACTTTATTAGAAAACATCT---CATAAAAAAACCTTTGTTAAAATCGCATGA
GCACTTTTAAAACAAATCAATTCTTCTAAAG
>chr6D_1992
--------------------------------------------------------------------------------
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----TAAACGGTCACTTTAGTGCTAGAACTTGTGGCATACATTGAAGTGGTGCAAAAACTTGGCTCGGACGTGCAAATAC
GGTGCTAATCATGTTTGTATACATCCGCAACACTGACGAGGCCTGCCAGCATGGCGTAGGACCCGTTGTCCGTGACCAAA
CAATGAAGACAAGGCGTGTGGTT--TTTTTCCTTTGTCCTAGAAACCCCCTTGTCTTTTATATTTTTTTTCACCAAAAAG
ACCCTGA-GAGGCAGGTCCTAGCTGTCAGCAGC-AAAAATAATAATTGAACAGAAAAAAGGTGCGCTTAGGTTTCAAACC
AGTGACATCCAATT-AACATGTCCGCTGCGAACCACCTAACAAAAATCATGCTCGTTGTCTGAAGAGGATATGCAACCTT
ATATTCTTTAATATTTTTAGGTGAATATTCTTTAATTAAACAACACAAATTTGCAAAGGTTTGTTACTCTTAACG-TTTT
CTTTAGACAATGCTACAATTTACGTCTATACCAGAACGTGCTCATGGGCCAAAACTGACAACAGTTTGTCAGTTAGTGTG
GCCTATTTTTAATATGTTACTATTTTATTTTTATTTTTTGCAGTTTGTAATAAAAATT---AATTATAACTATAAATAAC
ATACATATAA--------TTTTAATTATGTATTCATTTGAGGAACAATAGTCTTCGTACATATATTTATATTTTTAGTTA
TATAAATTCTTTTTTTGAAAACACACAAACTTTATTAGAAAACATCT---CAATAAAAAACCTTTGTTAAAATCGCATGA
GCACTTTTAAAACAAATCAATTCTTTTAAAG
>chr3B_1992
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----TAAACGATCACTTTAGTGCTAGAATTTGTGGCATACATTGAAGTGATGCAAAAACTTGGCTCAGACGTGCAAATAC
GGTGCTAATCATGTTTGTATACGTCTGCGACACTGACGAGACCTGTCAGCATGGCGTAGGACCCGTTGTCTGTGACCAAA
CAATGAAGACAAGGCGTGTTTTT--GTTTTCCTTTTTCCTAAAAACCCCCTTGTCTTATATATTTTTTT-CACCAAAAAG
ACCCTGAGGAGGTGGGTCTTAGCTGTCAGCAGC-AAAAATAATAATTGAACAGAAAAAAGGTGCGCTTAGGTTTCAAACC
AGTGACCTCCAATT-AACGTGTCCGCTGCGAACCACCTAACGAAGATCATGCTCGTTCTCTGAAGAGGATACACAACCTT
ATATTCTTTAATATTTTTAGGTGAATATTCTTTAATTAAACAACACAAATTTGCAAAGGTTTGTTACTCTTTACA--TTT
-TTTAGACAATGCTACAATTTACGTCTATAACAGAACGTGCTCATGGGCCAAAACTGACAACAGTTTGTCAGTTAGTGTG
CCCTATTTTTAATATGTTACTATTTTATTTTTATTTTTTGCAGTTTGTAATAAAAATT---AATTATAACTATAAATAGC
ATACATATAA--------TTTTAATTATGTATTCATTTGAGGAACAA-AGTCTTTGTACATATATTTATATTTTTAGTTA
TATAAATTCTTTTTTTGAAAACACACAAACTTTATTAGAAAACATCT---CATAAAAAAACCTTTGTTAAAATCGCATGA
GCACTTTTAAAACAAATCAATTCTTTTAAAG
>chrUn_1992
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----TAAACGGTCACTTTAGTGCTAGAACTTGTGGCATACATTGAAGTGGTGCAAAAACTTGGCTCGGACATGCAAATAC
GGTGCTAATCATGTTTGTATACTTCCGCAACACTGACGAGGCCTGCCAGCATGGCGTAGGACCCGTTGTCCGTGACCAAA
CAATGAAGACAAAGTGTGTGGTT-TTTTTTCCTTTTTCCTAGAAACCCCCTTGTCTTTTATATTTTTTT-CACCAAAAAG
ACCCTGA-GAGGCGGGTCCTAGCTGTCAGCAGC-AAAAATAATAATTGAACAGAAAAAAGGTGCGCTTAGGTTTCAAACC
AGTGACCTCCAATT-AACGTGTCCGCTGCGAACCACCTAACAAAAACCATGCTCGTTGTCTGAAGAGGATAC---ACCTT
ATATTCTTTAATATTTTTAGATGAATATTCTTTAATTAAACAACACAAATTTGCAAAGGTTTCTTACTCTTTACG-CTTT
-TTTAGACAATGCTACAATGTACGTCTATAACAGAACGTGCTCATGGGCCAAAACTGACAACAGTTTGTCAGTTAGTGTG
GCCTAC-TTTAATATGTTACTATTTTATTTTTATTTTTTGCAGTTTGTAATAAAAATT---AATTATAACTATAAATAAC
ATACATATAAATATATAATTTTAATTATGTATTCATTTGAGGAACAATAGTCTCCGTACATATATTTATATTTTTAGTTA
TATAAATTCTTTTTTTGAAAACACACAAACTTTATTAGAAAACATCT---CATAAAAA-ACCTTTGTTAAAATCGCATGA
GCACTTTTAAAACAAATCAATTCTTTTAAAG
>chr3A_1992
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----TAAATGGTCACTTTAGTGCTAGAACTTGTGGCATATATTGAAGTGGTGCAAAAACTTAGCTCGGACGTGCAAATAC
GATGCTAATCATGTTTGTATACGTCCGCAACACTAACGAGGCCTGCCAACATGGTGTAGGACCCGTTGTCCGTGACCAAA
CAATGAAGAAAGGGCGTGTGGT--TTTTTTCCTTTTTCCTAGAAACCCCCTTGTCTTTTATATTTTTTT-CACCAAAAAG
ACCCTGA-GAGGCGGGTCCTAGCTGTCAGCAGC-AAAAATAATAATTAAACAGAAAAAAGGTGCGCTTAGGTTTCAAACC
AGTGACCTCCAATT-AACGTGTCCGCTGCGAACCACCTCACAAAAATCATGCTCGTTGTCTGAAGAGGATAGACAACCTG
ATATTCTTTAATATTTTTAGGTGAATATTATTTAATTAAACAACACAAATTTGCAAAGGTTTGTTACTCTTTACG-T-TT
-TTTAGACAATGCTACAATTTACGTCTATAACAGAACGTGCTCATGGGCCAAAACTGACAATAGTTTGTCAGTTAGTGTG
GCCTATTTTTAATATGTTAATATTTTATTTTTATTTTTTGCAGTTTGTAATAAAA-TT---AATTATAACTATAAATAAC
ATACATATAA--------TTTTAATTATGTATTCATTTGAGGAACAATAGTCTCCGTACATATATTTATATTTTTAGTTA
TATAAATTCTTTTTTTGAAAAAACACAAACTTTATTAGAAAACATCT---CATAGAAAAACATTTGTTAAAATCACATGA
GCACTTTTAAAACAAATCAATTCTTTTAAAG
>chr7A_1992
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----TAAACGGTCACTTTAGTGCTAGAACTTGTGGTATACATTAAAGTGGTGCAAAAACTTGGCTCAGACGTGC-AATAC
GGTGCTAATCATGTTTGTATATGTCCGCAACACTGACGAGGCCTGCCAGCATGGTGTAGCACCCGTTGTCCGTGACCAAA
CAATGAAGACAAGGCGTGTGGTTTTTTTTTCCTTTTTCCTAGAAACCCCCTTGTCTTTTATATTTTTTT-CACCAAAAAG
ACCCTGA-GAGGCGGGTCTTAACTGTGT-CAGC-AAAAATAATAATTGAACAGAAAAAAGGTGCGCTTAGGTTTCAAACC
AGTGACCTCCAATT-AACGTGTCCACTACGAACCACCTAACAAAAACCATGCTCGTTGTTTGAAGAGGATACACAACCTT
ATATTCTTTAATATTTTTAGATGAATATTCTTTAATTAAACAACACAAATTTGCAAAGGTTTGCTACTCTTTACGTT-TT
-TTTAGACAATGCTACAATTTACGTCTATAACAGAACGTGCTCATGGGCCAAAACTGACAACAGTTTGTCAGTTAGTGTG
GCCTATTTTTAATATGTTACTATTTTATTTTTATTTTTTGCAGTTTGTAATAAAAATT---AATTATAACTATAAATAAC
ATAC--ATAA--------TTTTAATTATGTATTCATTTGAGGAACAATAGTCTTCGTACATATATTTATATTTTTAGTTA
TATAAATTCTTTTTTTGAAAGCACACAAACTTTATTAGAAAACATCT---CATAAAAA-ACCTTTGTTAAAATCGCATGA
-CACTTTTAAAACAAATCAATTCTTTTAAAG
>chr1B_1992
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----TAAACGGTCACTTTAGTGCTAGAACTTGTAGCATACATTGAGGTGGTGCAAAAACTTGGCTCGGACGTGCAAATAC
GGTGCTAATCATTTTTGTATACGTCCGCAACACTAACGAGGCCTGCCAGCATGGCTTAGGACCCGTTGTTCGTGACCAAA
AAATGAAGACAAGGCGTGTGGTTTTTTTT-CCTTTTTCCTAGAAACCCGCTTGTCTTTTATATTTTTTT-CAGCAAAAAG
ACCCCGA-GAGGCGGGTCTCAGCTGTCAGCAGC-AAAAATAATAATTGAACAGAAAAAAGGTGCGCTTAGGTTTCAAACC
AGTGACCTCCAATT-AACGTGTCCGCTGCGAACCACCTAACAAAAATCATGCTCGTTGTCTGAAGAGGATACACAACCTT
ATATTCTTTAATATTTTTAGGTGAATATTCTTTAATTAAACAACACAAATTTGCAAAGGTTTGTTACTCTTTACG--TTT
-TTTAGACAATGCTACAATTTACGTCTATAACAGAACGTGCACATGGGCCAAAACTGACAACAGTTTGTCAGTTAGTGTG
ACCTATTTTTAATATGTTACTATTTTATTTTTATTTTTTGCAGTTTGTAATAAAAATT---AATTAT-------------
--------------------------------------------------------------------------------
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-------------------------------
>chr6A_2001
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-------------ACTTTAATGCTAGAACTTGTGGCATACATTGAAGTGGTGCAAAAACTTGGCTAAGACATGCAAATAC
GGTGCTAATCATGTTTGTATACGTCCGCAACGCTAACGAGGCCTGCCAGCATGGCATAGGACCCGTTGTCCGTGACCAAA
CAATGAAGACAAGGCGTATGTTTTTT----CCTTTTTTCTAGAAACCCCCTTGTCTTTTATATTTTTTT-CACCAAAAAG
ACCCTGA-GAGGCGGGTCCCAGCTGTCAGCAGC-AAAAATAATAATTGAACAGAAAAAAGGTGCGCTTAGGTTTCAAACT
AGTGACCTCCAATT-AACGTGTCCGCTGTGAACCACCTAACAAAAATCATGCTCGTTGTCTGAAGAGGATACACAACCTT
ATATTCTTTAATATTTTTAGGTGAATATTCTTTAAGTAAACAACACAAATTTGCAAAGGTTTGTTACTCTTTACG-TTTT
-TTTAGACAATGCTACAATTTACGTCTATAACAGAACGAACTCATGGGCCAAAACTGACAACAGTTTGTCAGTTAGTGTG
GCCTATTTTTAATATGTTACTATTTTATTTATATATTTTGCAGTTTGTAATAAAAATT---AATTATGAAACTA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------SSS-
----S--S-----SS-SSSSSS-----S-------------------------SS-------------------------
-------------S-------------------------------------------SS----S-S--S-----------
----S---------S-------------------------S-----S--S------------------------------
S----------------S--------S--S---------------S-------S----------------S--S------
------------------------S----------S--------------------------------------------
----------------------S--S--------------------SSSSSSSS-------------------S------
----------------------------------S---SS------------S---------S-SSS--SS---------
---S------------S----------------S---------------------S-----------------SS-S-SS
SSS-S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------S------------------------------------------------------------S---
----------------------------S---------------------------------------------------
---------------------S-----------SS--------------------------------------SSS----
------------------------S------------S------------------------S-----------------
----------------------------S-----S-S-S---------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
----S---------------------------------------------------------------S-----------
-----------------------------------------------S-----------S--------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
--------------------------------S-----------------------------------------------
---S-------------------------------------------S-----------------------S--------
---------SSSSSSSSSSS--------------------------------S------S--------------------
-------------SS------------S-S---------------------------------S----------------
--------S------S-----------------S-S---S-S-S------------S--S-------S------------
---------------------------------------------------------------S----------------
---------------------------------------------------------------S---------------S
S-------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------S-----------------------
--------S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------S-------------------S----------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>forward_54
----------------------------------ACGAAAAAGACTCGACGCCT--------------------------
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>reverse_3344
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---------------------------------------------------------------TTCGGACGTGCAAATAC
GGT-----------------------------------------------------------------------------
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-------------------------------
