>input_sequence_68622
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---------------------------ATGTTCTACCTATTTCTCCATGCAGGTCTGGGGAAGAGG---AAGAAACAGAG
CAAGAAAGAGATCGCCACAATGCCGATGGAGCAGGCCTTCATGCACTGCGACAAGGACACCCTCAAGATGGCCATGCTCA
AGCATGAAGAGACCTTCAGGCAGCAGGTATATAAGATAAGAATTCATAAGT--------------TTTTGCCTCGCCGTC
TCAT---GACTGTGGCCTCATGATTTGTGTACGTTGTCGCAGGTTCACGATCTCCATCGCCTGTACAGAATTCAGAAGCT
TCTGATGCGGGACCTCAAGAGGGAGATCAAGAGCCAGCAGAGCGACCTGTCCGCCTCCCCCAACGGCTCCCCGGGCGCCG
AGTACGACCACCG---CCGCAGGGCGAGCGCGCTCGACGCGTCCTCCTACGAGCAGCACTGGCAGTACGGCGCCACCCGC
CGCGGCAGCCACGC------GGCGGCGACTCCGCGCGCC------GCGCAGCTGAGCCCGGAGGCGACCGACGACGAGGA
GGCGGAGCTGGAGCTCACGCTCGCCGTGGGCAGCGGCGGCAAGAAGCGGTACAGCGACGGGCACTGCTCCCCCGGGGAGA
GCTTCTCGTCGTCCACGACGGAGTCGGACACGCTCACGGGCGGCCAGGAGTGGCAGCAGGCGCAGGCGCAGCACCAGCTG
GTCGGCACTGGCGCAGGCGCGGGCTCGCCGTACCACAAGCGGAGGCCGGCAGGGTTCGGCGCGGAGCAGGCGGTGGACGG
CGGGGT---GCAGCAGCCTTCTCCGCTGCTGTTCCACTGGCTCAGCCTACGGATGGCGTGA-------------------
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---------------------------------------------------
>chr5B_1_TraesCS5B01G405100
ATCCATCCATCACGCTCCTCTCTCTCAGGGAGCAAC-AAGTCCAATCTTTTGCTCTCCGTTTCAGGGATAGTAATTCTCT
A----TCAACAGATCCATGATCGCACAACCACACTCGGGCATGTAATTTATGTAGGGTGTGGGGTGGCCCGTTCCTTACT
CAACCTCTGGTCCTGTCCCCTCTGCTCGGCTCAGCCGCTGCATGCCGCAAGAGCAAGTCCAGAGCGAGCGAGAGAGAGAG
AGAAAGATACTCCTAGTCGGCCTGCAGTC---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CTAGTGTACTCCGTTGTTTGGCAT
GCATGCCTCCCTGCAGTGCAGCGCAGGCCTGGTTAAAATACCAC---TGTGAAAGGAATCTTACATCATTCGTGTCTTGT
CCCCTCC-----CCCTTCTCTTTTCCTTCTCTCTTTCTTCTTCAGAGGAGAGTGAGAGAGAGGAGAGAGGGAGAGAGGGA
GAGGGACGGATGGGGACGACGGTCTGCTGGTTGGTGTGTATAAAAGGGAAAGCCTGTGGCCTTTGGAGCCATACAATGAT
CAGAAACCGATAGCGAGAAGAGAAGAGGAGCAGGGCCGAGTGACTGGTAGTTGGAGCTCAGTGACACTTCAGTTCTTGAG
TCACTTCTCTGACATCTAGAGTAATTGATAGGTGAGAAATGAGCTCAT-----TTCCCTCTCTTCTTTTCCCTTACCATC
CGGTGCTCATCAATCTGCAATGCTCTGTTCAATCATTTTTAGGCCTTTTCAGCCTTCTTTT-TCCTTTGGGTGGTGACTT
GCTTCAGAATACAGTTACTCCAGCAGAGAGCTTCTCCTGTCATGCACACTGTTGTTCTTCCCC-TCCTTTATTTCCTTTC
CACCCTCTGAATCTAGTGCCCGATTCTCGTTCCCACTTCGAAAGCTCCAATTGTGTGCCTGCATT---------------
-----GTAGTACGAGAGATCAGCTCGTATGCTCACTTTCTGCTCAAGCTCATATCTGTATGACATGATACAGTGTAGTGT
AGTTGGAAATACTTGGAGCAGAGGCTTATGTTCTACCTATTTCTCCATGCAGGTCTGGGGAAGAGG---AAGAAACAGAG
CAAGAAAGAGATCGCCACAATGCCGATGGAGCAGGCCTTCATGCACTGCGACAAGGACACCCTCAAGATGGCCATGCTCA
AGCATGAAGAGACCTTCAGGCAGCAGGTATATAAGATAAGAATTCATAAGT--------------TTTTGCCTCGCCGTC
TCAT---GACTGTGGCCTCATGATTTGTGTACGTTGTCGCAGGTTCACGATCTCCATCGCCTGTACAGAATTCAGAAGCT
TCTGATGCGGGACCTCAAGAGGGAGATCAAGAGCCAGCAGAGCGACCTGTCCGCCTCCCCCAACGGCTCCCCGGGCGCCG
AGTACGACCACCG---CCGCAGGGCGAGCGCGCTCGACGCGTCCTCCTACGAGCAGCACTGGCAGTACGGCGCCACCCGC
CGCGGCAGCCACGC------GGCGGCGACTCCGCGCGCC------GCGCAGCTGAGCCCGGAGGCGACCGACGACGAGGA
GGCGGAGCTGGAGCTCACGCTCGCCGTGGGCAGCGGCGGCAAGAAGCGGTACAGCGACGGGCACTGCTCCCCCGGGGAGA
GCTTCTCGTCGTCCACGACGGAGTCGGACACGCTCACGGGCGGCCAGGAGTGGCAGCAGGCGCAGGCGCAGCACCAGCTG
GTCGGCACTGGCGCAGGCGCGGGCTCGCCGTACCACAAGCGGAGGCCGGCAGGGTTCGGCGCGGAGCAGGCGGTGGACGG
CGGGGT---GCAGCAGCCTTCTCCGCTGCTGTTCCACTGGCTCAGCCTACGGATGGCGTGAAGCTAGCCATGGAATGGAA
GGAAACCGACTGG-----------------------CGTAGCTAGTGGCAGTCAGTTTGACTCCCTGTTTGTTGAGCTGT
AGTAGGAGTATTGCTATGTTTCTGTGCTTCCAGCTTAGTCTTGGATCAAGCTAATCCAAAAA-TAATTTAACTTGTTGCT
GAGGATTATGTAGGAGCCACTTTCCACAGGTGGAGAGGGGTGAATGTAGGGGCTTTTCAGATTAAGCTAAGCTTAATTTT
AAGGGGCTTTTCAGATGAAGCTAAGCTTAATTGTTGGGTCTCAGTGCAAGTAGCTTAATTTTGGTTTGCTTTTGTGAGTG
GGTGACTTTGTCTGTTATTTTA----------------------------------------------------------
------------------------------------------------------------------------AGGGGCAG
TCTTTCGGTATGAATTCAAATTCACAAGAACTAAGAACAGAATTTCCTATCGAATGAGGATTTTGTTGCCCTCGGTGCTA
TACCCCTATATGAATATAGCATTAAAAATAATATCAAAAAGTTCTACAACATTCTGGAATTTTAGGATATCAAACATGGG
TTTCATTATACACTTGTGTTCAGTTTCGTGGAAAATGGATGCCAGAGGTAATCTCGGTAAAGAAAAAGTCAAAATATTCC
TATATATAGAAAAGACCAAGACCACTCATTCGTGACGAAATTGAACATGGGT--ACAGTCGGCACCCAGATTTTATATTC
CAAAATTTCATAATT-TTTAAAATGTCCCCGTATTTATTTTTAGTACTATATTCATATTCATATAGGGGTGTGGAGCTCC
AATTCATTTCTCGTTTCCCTTTTCCTCCTTTCTTAGGAGAATATCTGAACTTAAGACTACAGCGGTGGCCCATAAGCCCA
TGGACATTCGTGGGCAACATCTTAGTTGTGCATGTAACTCTTTGTGGCCCATAAGC------------------------
---------CCATGTAATGCACCTGCCGCCGTCATGTGTCGCGTGTTGGCTTCTCTCTCTAAATTGTAGTTTACTTATAT
TTTTGTATGCGTTTTCAGGATTTAGATGGGATTTTTTCGCTTTATGGTTTT
>chr5A_1
ATCCATCCATCACGCGCCTCTCTCTCAGTGAGCAAC-AAGTCCAATCTTTTGCCCTCCGTTTCAGGGATAGTAATTCTCT
ACTTATCAACAGATCCATGATCTCACAGCCACAGTCGGGCATGTAAATTATGC---ATGT-GGGTGGTCCGTTCCTTACT
CAACCTCTGGTCCTGTCCCCTCTGCTCGGCTCAGCCGCTGCATGCCGCAAGAGCAAGGCCAGGCC-A--GAGAGAGAGAG
AGAAAGATACTCCTAGTCGGCCTGCAGTCCTAGGTGGTGTTTGTTTCCAGAGACTTTTTGGTGCAGGGACTAGAAAAAGT
CCCTACCAAACCAAACAGGATGGGACTTTTTTGGAACTTTTTGCTAAAAGTCCTTAGAAGCACCTCCTTAAGAGTCTTTT
TTAAAAAGTCCCAGGGACTAAAAAAAAGTCCGAGGACTAGAGAAACAAACACCATCCTAGTGTACTCCGTTGCTTG----
GCATGCCTCCCTGCAGTGCAGCGCAGGCCTGGTTAAAATACCACCACTGTGAAAGGAATCTTACATCATTCGTGTCTTGT
CCCCTCCCCTCGCCCTTCTCTTTTCCTTCTCTCTTTCTTCAGAGAACAGAGTGTGTGT----GAGAGAGAGGGAGAGGGA
GAGGGACGGATGGAGACGACGGTCTGCCGGTTGATGTGTATAAAAGGGAAAGCCTGTGGCCTTTGGAGCCATACAATGAT
CAGAAACCGATAGCGGGAAGAGAAGAGGAACAGGGCCGAGTGAGTGGAAGTTGGAGCTCAGTGGCACTTCAGTTCTTGAG
TCACTTCTCTGACATCT--AGTAATTGATAGGTGAGAAATGAGCTCATCTCATTTCCCTCTCTTCTTTCCCCTTACGATT
CTCTGCTCATCAATCTGCAATGCTCTGTTCAATCATTTTTAGCCCTTTTCAGGCTTCTTTTTTCCTTTGGGTTGTGACTT
GCTTCAGAATACAGTTACTCCAGCACAGAGATTCTCCTGCCATGCACACTGTTGTTCTTCCCCCTCCTTTATTTCCTTTC
CCCCCTCCGAATCTAGTGCCCGATTCTCCATCCCACTTCGAAAGCTCCAATTGTGTGGCTCCATT---------------
-----GTATT--------------------CTCACTTTCTGTTCAAGTTCATATCTGTATGGCGATATACAGTGTAGTGT
GGTTAGGAACACTTGGGGCAGAGGCTTATGTTGTAGCTATTTCTCCATGCAGGTCCGGCGAAGAAG---AAGAAACAGAG
CAAGAAAGGGATCGCCACAATGCCGATGGAGCAGGCCTTCATGCACTGCGACAAAGACACCCTCAAGATGGCCATGCTCA
AGCACGAGGAGACCTTCAGGCAGCAGGTATGA-------------AGAAGCTACAACCTTTTTGCTTTTGCCTCCCCGTC
TCAAGAAGACTGCGGCCTCATGATTTGTGTACGTTGTCGCAGGTTCACGATCTCCATCGCCTGTACAGAATTCAGAAGCT
TCTGATGAGGGACCTCAAGAGGGAGATCAAGAGCCAGCAGAGCGGCCTGTCCGCCTCCCCCAACGGCTCCCCGGGCGCCG
AGTACG---ACCG---CCGCAGGGCGAGCGCGCTCGACGCGTGCTCCTACGAGCAGCAGTGGCAGTACGGCACCACCCGC
CGCGGCAGCCACGGGGACGGGGCGGCGACTCCTCGCGCGGCGCAGGCGCAGCTGAGCCCGGAGGCGACCGACGACGAGGA
GGCGGAGCTGGAGCTCACGCTCGCCCTGGGCAGCGGCGGCAAGAAGCGGTACAGCGACGGGCACTGCTCCCCCGGGGAGA
GCTTCTCGTCGTCGACGACGGAGTCTGACACGCTCACGGGCGGCCAGGACTGGCAGCAGGCGCAGGCGCAGCAGCAGCTG
GTCGGCACTGGCGCAGGCGCGGGCTCGCCGTACCACAAGCGGAGGCCGGCAGGGTTCGGCGCGGAGCAGGCGGAGGACGG
CGGGGTGCAGCAGCAGCCTTCTCCGCTGCTGTTCCACTGGCTCAGCCTACGGATGGCGTGAAGCTAGCCATGGAAGGAGA
ACGACCGGCGCATGCATGTACCGTCGCCGTCTGCCTCGTAGCCACTGGCAGGCAGTTTGACTCCCTGTTTGTTGAGGCGT
AGTAGAAGTACTAGTATGTTTCTGTGCTTCCATCTTAGTCATGGATCAACCTAATCCAAAAAATAATT-AACTTGTCGTT
GAGGGTGATGTAGGGGCCACTTTCCACAGGTGGAGAGGGGTGAAATGT--------------------------------
-AGGGGCTTTTCAGATGAAGCTAAGC---ATGATTGGCTCTCAGTGCAAGTAGCTTAATTTTGGTTTGCTTTTGTGAGTG
GGTGACTTTGTCTGTTATTTTAGGCTTTGTTCAGTTAATCCTCTTCCCAAAAGGATTGGAGGGGATTGGCAAGGATTGGT
TCGTATTTTGACTTTATCCCCCTCAAACCCCTTCAATCCACTAGGATTCATACGCAACCGTACAAGGCCTTAAGGGGCAG
TCTTTCGGTATGAAATCCAATTCACAAGAACTAAGAACAGAATTTCCGATCGAATGAGGATTTGTGGCT-CTCGGTGCTA
TACCCCTATATGAATATAGCATTAAAAATAATATTTAAAAGGTCTAAAACATTCTGTAATTTTAGGATTTTAAACGTGGG
TTTCATTATATACCTGTGCTCAGTTTCGTGGGAAATGGATGCCTGTGGTAATCTCGGTAAA-AAAAAGTCAAAACATTCC
TATGTATAGAAAAGACGACGGCCACCCATTCGCGACAAAATTGAACATGGGT--AT--------CCCAGATTTGATATCC
CAGAATTTCAGAATTCTTTAAAATTTCCCCGTGTTTATTTTTAGTACTATATTCATATAGA------GATGCGGAGCTCC
AATGCATTTCTCGTTTCCCTTTTCCT---TTCTTCGGAAAATATCTGAACTTAAGACTACAGCGGTGGCCCATAAGCCCA
TGGACATTCGTGGGCAACATCTTAGTTGTGCATGTAACTCTT--------------------------------------
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>chr5D_15
CTCTCT-------------CTCTCTCAGTGAATAACAAAGTCCAATCTTTTGCTCTCCGTTTCAGGGATATTAATTCTC-
---TATCAGCAGATCCATGATCGCACAACCATACCCGGGCATGTAATTTATGTACAATGT-GGGTGGCCCGTTCCTTACT
CAACCTCCGGTCCTGTCCCTTCTGCTCGGCTCAGCCGCTGCATGCCGCAAGAGCAAGGCCAGAGCGA--GAGAGAGGGAG
AGAAAGATACTCCTAGTCGGCCTGCAG-----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TCCTAGTGTACTCCGTTGCTTG----
GCATGCCTCCCTGCAGTGCAGCGCAGGCCTGGTTAAAATACCAC---TGTGAAAGGAATCTTACATCATTCGTGTCTTGT
CCCCTCC-----CCCTTCTCTCTTTTCCTTCTCTTTCTTCTTCAGAGAG----------GAGGAGAGTGAGAGAGAGGGA
GAGGGACGGATGGAGACGACGGTCTGCTGGTTGATGTGTATAAAAGGGAAAGCCTGTGGCCTTTGGAGCCATACAATGAT
CAGAAACCGATAGCGAGAAGAGAAGAGGAACAGGGCTCAGTGAGTGGTAGTTGGAGCTCAGTGGCACTTCAGTTCTTGAG
TCACTTCTCTGACATCT--AGTAATTGAGAGGTGAGAAATTAG-----CTCATTTCCCTCTCTTCTTTCCCCTTACGATC
CGGTGCTCATCAATCTGCAATGCTCTGTTCAATCATTTTTAGGCCTTTTCAGGCTTCTTTTCTCCTTTGGGTTGTGACTT
GCTTCAGAATACAGTTACTCCAGCAGAGAGATTCTCCTGTCATGAACACTGTTGTTCTTCCCCTCTTTTCC-TTCTTTTT
CCTCCTCTGAGTCCAGTGCCCGATTCTCGATTCCACTTCGAAAGCTCCAATTGTGTGGCTGCATTGTAGTACGAGAGATC
AGCTCGTATT--------------------CTCACTTTCTGTTCAAGTTCATATCTGTATGGCAAGATACAGCGTCGTGT
AGTTAGAAACAGATGGAGCAGAGGCTTATGTTCTACCTATTTCTCCATGCAGGTCCGGCGAAGAAGAAGAAGAAACAGAG
CAAGAAAGGGATCGCCACAATGCCGATGGAGCAGGCCTTCATGCACTGCGACAAAGACACCCTCAAGATGGCCATGCTCA
AGCACGAGGAGACTTTCAGGCAGCAGGTATATAAGATCAGAATTCAGAAGCTACAAACTTTTTGCTTTTGCCTCCCCGTC
TCAAGAAGACTGTGGCCTCATGATTTGTGTACGTTGTTGCAGGTTCACGATCTCCATCGCCTATACAGAATTCAGAAGCT
TCTGATGCGGGACCTCAAGAGGGAGATCAAGAGCCAGCAGAGCGGCCTGTCCGCCTCCCCCAACGGCTCCCCGGGCGCCG
AGTACG---ACCACCACCGCAGGGCGAGCGCGCTCGACGCGTCCTCCTACGAGCAACAGTGGCAGTACGGCGCCACCCGC
CGCGGCAGCCACGC------GGCGGCGACTCCTCGCGCCGCGCAGGCGCAGCTGAGCCCGGAGGCGACCGACGACGAGGA
GGCGGAGCTGGAGCTCACGCTCGCCGTGGGCAGCGGCGGCAAGAAACGGTACAGCGACGGGCACTGCTCCCCCGGGGAGA
GCTTCTCGTCGTCCACGACGGAGTCGGACACGCTCACGGGCGGCCAGGACTGGCAGCAGGCGCAGGCGCAGCACCAGCTG
GTCGGCACTGGCGCAGGCGCGGGCTCGCCCTACCACAAGCGGAGGCCGGCAGGGTTCGGCGCGGAGCAGGTGGAGGACGG
CGGGGTGCAGCAGC---CTTCTCCGCTGCTGTTCCACTGGCTCAGCCTACGGATGGCATGAAGCTAGCCATGGAATGGAA
GGAAACCGACTGG-----------------------CGTAGCTAGTGGCAGTCAGTTTGACTTCCTGTTTGTTGAGCTGT
AGTAGGAGTACTGCTATGTTTCTGTGCTTTCAGCTTAGTCTTGGATCAAGCTAATCTAAAAA-TAATT-AACATGTCGTT
GAGCGTAATGTAGGAGCCACTTTCCACAGTTA------------------------------------------------
-----GCTTTCCAGGCGAAGCTAAGC---ATGGTTGGCTCTCAGTGCAAGTAGTTTAATTTTGGTTTGCTTTTGTGAGTG
GGTGACTTTGTCTGTTATTTTA----------------------------------------------------------
------------------------------------------------------------------------AGGGGCAG
TCTTTGGGTATGAAATCAAATTCACAAGAACTAAGAACAGAATTTCCCATCGAATGAGGATTTGTGGCT-CTCGGTGCTA
TACCCCTATATGAATACAGCATTAAAAATAATATCAAAAAGTTCTAAAACATTCTGGAATTTTAGGATATCAAACGTGGG
TTTCATTATACACCTGTGTTCAGTTTCGTGGAAAATGGATGCCAGAGGTAATCTCCGTAAA-AAAAAGTCAAAACATTCC
TATGTATAGAAAAGACCACGACCACCCATTCGCGACGAAATTGAACATGGGTGTACAGTCGGCACCCAGATTTGATATCC
CAAAATTTCAGAATTTTTAAA-ATTTCCCCGTATTTATTTTTAGTACTATATTCATATAGA------GGTGCCGCGCTCC
AATGCATTTCTCGTTTCCCCTTTCCT---TTCTTAGGAGAATATCTGAACTTAAGACTATAGTGGTGGCCCATAAGCCCA
TGGACATTCGTGGGCAACATCTTAGTTGTGCATGTAACTCTTGGGGGTCCGCTATCACCTAAGGGACACTTTTGTGGTTT
GAGAGAGTGCCATGTGATGCACCTGCCGCCGTCATGTGTCGCGTGCTAGCTTCTCTCTCTGAATTGTAGTTTACTTATAT
TTTTGTACGCGTTTTCAGGATTTAGATGAGATTTTTTTGCTTTACGGTTTT
>SNPs
---------------S------------S---------------------------------------------------
------------------------------------------------------SSS---S-------------------
---------------------------------------------------------S---------SS-----------
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------------------------------------------------------------------------S---SSSS
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-----------------------------------------------SSSSSSSSSSSS----------S----------
-------------S-------------------S----------------------------------------------
-----------------------------S-------------S-------------------S----------------
-----------------SS-------------------------------------------------S-------S---
----------------------------------------------------S-------------------S-------
------------------------------S-------------------------------------------------
-S---------------------------S---------------------------S----------------------
--------S-SSSSSSSSSSSSSSSSSSSS-----------S-----S-------------S--S---------------
----S----S---------------------------------------------S--S-----S---------------
--------S---------------------------------------------S-------------------------
----S--S-----------------------------S--------S---S-----------------------S-----
---S----------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
------SSS-------------------------------------------------S---------------------
--------------------------------S-----------------------------------------------
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-------------------------------------------------S------------------------------
-------------------------------------------------------------------------S------
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----------S---------------------------------------------------------S-------S-S-
----S-S-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S-------------------------SSS--S-----S------------------------------------------
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--------------S--------------------------------S---------------SSSSSSS----------
----------------------------------------------S----------------------------S----
-------------S-----------------------------------------------S------------S-----
---S--------------S------S------S----------------------------------------S----S-
----------S-------------S---------------------------------SS-SSSSSS----S--------
---S----------------------SSS---------------------------------------------------
------------------------------------------S-S--S--SSS-S-------------------------
---------------S-----------------------------S-S------------S-------------------
-------S--------------------S--------S------S------
>forward_228
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------------------------------------------------AAGAGCAAGTCCAGAGCGAG------------
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>reverse_2624
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---------------------------------------------------------------TGTTGCCCTCGGTGCTA
TAC-----------------------------------------------------------------------------
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