>input_sequence_68560
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------ATGTCGGCGAGGTTGGTCATACTGGGC
GGCGGTGTTCAGTTGTCGGCGTA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TGAGGCTCTAGAGCCCGGCGTCTCAG
GTGATAGTGGGGGATATCAGGTTGGGAGGTGGCGTGCCTCAG-GGAGTCCGCTCTTGGCTGGATCTGGAGGGCCAGATTG
GGTTAGTGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AGACTTACTACCTCGGCTGCTCGACATGTG
ACGGTGGTGCCTTGGCGTTGCGTTGCGGGAAGGTAGCCCACGACGTGGTGCTGCCTGCCGCCCGTGATCCCCATCCTTGG
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GTGGAGGGTG
ATCCCAGTGTTGTCGGTGCTTTTACGGTGGCGGCTCCATGATCTTGTTATGGAGTCCTTGTT------CCAGCAGCAGT-
GTCCTTCCCTCGGGTTGGGTTCGTGACCTTGGTACCTCTGTGTGACTCCAAGTGAAAGCTCCGTAGTACGGCGCTGCCGG
CAATGCTTGTGGGTGTCAAGTCCCTCGTGAAGGTGTCGTCATGGTTCCCCTCCTCGTGCCAGGGCTC-----------CC
CAGTCCTTCTTTGCAGCTTCCTCGGTGGCAGAACGTTGCATCGTTATCCTCTTGGGGTAACGTGGAGCTCAGGTAACTTC
ATGTTGCAACAT----GCATCTT-----CGGGCATGGATCCTAAACTGAAGTTTCTTCGATTCTGGCATGGGGCAGTCTT
GTTGGTCTCCTAC--TTTAAAACGTAACAGTTGTCATCGTTCTTAGTCCTCGCTATCCGCATGCAGGTCAGCGCTCCACG
ACTCAAATCGAGAGGGCGCAGTGGCACTCTCGGGTGGCTGCTTGGTTGTGCGCGGC--GCGTAA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>chr4A_1_TraesCS4A01G012500
TGTCACTGAGGTAGATAGATTTATAGAATTATATT--TTTTAGGTAAAAATAGGACAGACGGGCACACATCACTCTTGCT
ATGATGTT--------TGGAGCCTTGTCAGCTCCGAATCTTTCTTCAAATCTAATCCTTCTGTGCAGTGGTACCGAAACC
GCAGCGTCACCGCTCAGATATTTCGGCTACACGGCATAAAACATT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ATTTTGGAAGCACATTTGTAGCATAAA
TAAATACTCTCTTCGTCCCAAAATAACTGTCTTAATTAGTACTCACTCCGTCTCAAAATTATTGCCTTAAATTTGTCTAG
ATACTGATGTACCTAATACTAAAATGTGACTTGATACATCCGTATTTAGACAAATTTAAGATAAGAATTTTGGGACGGAG
AGAGTACAAAATTATAATAAGGTTAAGACATTTATTTTGGGACAGAGAGAGTAGCATATTAGTTCTTTTTATGCATGAAC
AAATCCAGCAACTTTGGTTATGCCGACACTCAGCGTTGGCG-AAAGCTACATGAAGAAACACCATATCTGTAACCAGATC
TTTTTAA-----------GAAATCGGCTATCTGTTTAAAGAAAACAATTTAAGTACGCAATGTAGACTCAATTTCAACAG
ATCATTTATTGGCAAATGCCAAAATTGCAAACAATGTCTACATAGGACCATGTTAGAAACGAGATCAACGGCAAACATCA
GGGAACCCATAAATGCTGTGTTTGCTCCTCAATGCCTTCGTTGACGAAACAAAAACATGTCACATGTGGTGACAGGATAA
CACTAATTAGGATCGAGTGGTGTTTGTCGTGGACGTAGTTGGGAATCTAACTATATTTAGCACAGATGCAAACTGCAGTT
TATCACATAGATAAGTTGTAACTTATGCATACCATGGTTAGCTATTTATGTAATTT-TAAAAAGAAAAGAAAAAATAATT
CAGAACCATGA-----------------------------TA-------------------TCTGACT------------
-CTAGCTATTGTGGCGTTAGTAAACGACAGAGGGTAGAGTAAAAAA-TGTGATATGTCGGCGAGGTTGGTCATACTGGGC
GGCGGTGTTCAGTTGTCGGCGTA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TGAGGCTCTAGAGCCCGGCGTCTCAG
GTGATAGTGGGGGATATCAGGTTGGGAGGTGGCGTGCCTCAG-GGAGTCCGCTCTTGGCTGGATCTGGAGGGCCAGATTG
GGTTAGTGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AGACTTACTACCTCGGCTGCTCGACATGTG
ACGGTGGTGCCTTGGCGTTGCGTTGCGGGAAGGTAGCCCACGACGTGGTGCTGCCTGCCGCCCGTGATCCCCATCCTTGG
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GTGGAGGGTG
ATCCCAGTGTTGTCGGTGCTTTTACGGTGGCGGCTCCATGATCTTGTTATGGAGTCCTTGTT------CCAGCAGCAGT-
GTCCTTCCCTCGGGTTGGGTTCGTGACCTTGGTACCTCTGTGTGACTCCAAGTGAAAGCTCCGTAGTACGGCGCTGCCGG
CAATGCTTGTGGGTGTCAAGTCCCTCGTGAAGGTGTCGTCATGGTTCCCCTCCTCGTGCCAGGGCTC-----------CC
CAGTCCTTCTTTGCAGCTTCCTCGGTGGCAGAACGTTGCATCGTTATCCTCTTGGGGTAACGTGGAGCTCAGGTAACTTC
ATGTTGCAACAT----GCATCTT-----CGGGCATGGATCCTAAACTGAAGTTTCTTCGATTCTGGCATGGGGCAGTCTT
GTTGGTCTCCTAC--TTTAAAACGTAACAGTTGTCATCGTTCTTAGTCCTCGCTATCCGCATGCAGGTCAGCGCTCCACG
ACTCAAATCGAGAGGGCGCAGTGGCACTCTCGGGTGGCTGCTTGGTTGTGCGCGGC--GCGTAATAGTTTAGTGGT-TCC
-CAAGGGGGGCGCATTTGTCGTTCCTAGTCTTTGGTCTTGTGTACTTACTGTTGGGTGTGAATTCTCAAGTTTTTTTTTT
TGCTTGGCTTTGAGTTTGTGGCTTCTTCGCGCCTCTCTCAGATGTCGATTTTATTTTAACTTGCTTTTGTAAAAGAATTT
TCTCATCACCTTGTATCAGCTCGGACGTTGCGGCTATAAG-------CGGGGCG-AAAATTGTGCTGACAATATGTTGCT
TATCAAGTTTTGAAGGAGGAAAGGGAATAATTTAGGTATGTGTGAAGATGA-------GGCGAGAGTGAACAAAGAATGA
GAAAAAGTAACGGGG-TAATCTAGACCTCAAATAACAGATTGTGTACGATAC--TTAGATGGTCTGCCAGCTTTAGCCAC
ATGATTTAATAAGAAATTGAATTAATCTTCGGCACG----TCTAAAGCTAGGCACACCATTAATTTGGGAAAAGGTGTAC
TC-CCATCGCTGGTCTGTAACACGCGCG-----------CACGCGCACACACACACACAATTACACAATTTAGGTG----
--------------------------------------------------------------------------------
------------------TGTGTGAAGATGAAGCAAGCACAAAGAAAAATAGAGAAAGTAAC---GGACTAATCTAGACC
TCAAATAACAGATTGTGTATAGGGGCTGCAAGAAAAGCTCGAGGCTCATGAGCCGCTCGAGATCGACTCGTTTTTCGATT
CGGCTCGAGATCAACTCGAAAAGAAACAAGCTGAGTTTAAACATTTTATGTAGCTCGACCGAGAAACGAGCCGATCTTGA
GTCAATGTTGGATCGCTCGATTTTAGCTCGATAGCTCGACATAATATCATTATGTTAAATGATCATGCCATATATTAAAT
GGGAATAAAGATAATTTATTACCATATATGTTGTCCATAATTTATCTCCATTTTATTTACCAACATACATGAAAACTTAA
TTAAGTGCAAAGAAGATTTAGGCCTAATTAATTTATCTCCATTTTATTTACCAACATACATGAAAACTTAATTAAGTGCA
AAGAA
>chr4D_1
TGTCACTGAGGTAGATAGATTTATAGAATTATATTCCTTTTATGTAAAAGAAGGATAGACAT-CACACATCACTCTTGCT
ACGATGTTCTTATAATTGGAGCCTTGTCAGCTCCGAATCCTTCTTCAGATCTGATCGTTTCT----GTGGTACTGAAACC
GCAGCGTCACCACTCTGATATTTTCGTTACATTGCACAAAACATTATTTTGGAAGAGAGCAGCGATTCGGTGCCCAGACT
CATCTGTATCCGCGATGATGGAAAAATTCAAAACAAATACTAAAAAAATTAAAAAACTACTTTTTGCATGGTAGATAATT
TGATTCGGGAGGCGCGCTTCAAATTTCAGATCATTTGGACATCTGAGTAGCTCTCGGCGAAAAAGATAAATTTGGGATCT
GTAAAAAAGTTTACTGTACATGTATTATTCTGACCCAATTTGTCTTTTTTTGCTGAGAGCTACTCATATGTTCAAATGAT
CTGAAATTTGGAACGCACTTCATGCATCAAATTACCTGCCATTAAAAAATTGGGTTTTTTTATTTCTTTTGTATTTTCAT
GAATTTTTTCTTGATCGGGTGCAGATGAGGCTGAGCTCAAAAATGGATATCCGATTTTGGAAGCATATTTGTAACATAAA
TAAATAGCTTTATTTTGT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GTGAAC
AAATCCAACAATTTGGGTTACGTCGACACTTAGCGTATGGCAAAAGCTT----AAGAGACATCAGATCTGTAACCAAATC
TTTTTGTGTAGTTTCACCGAAGCGAGCTATCTGTTTAAAGGAA-TAAATTAACAATGCAATGTAGATTCAATTTCAACAT
ATCATTTATTAGCCAAATCCAAAATTGCAAACAATGGCTACATAT---CATGTTAGAAATGAGGTCCACGGCAAACATCA
GG-AACCGTTAATGTTA-TGTCTGCACCTCAATGCCTTCGTTGACGAAACAAAAACAT-------GTGGTGACAGAATAA
CACCAATTAGGATCGAGTGGTGTTTCTCGTGCATGTAGTTGGGAACCTAACTATATTTTGTACAGATGCAAACTGTGGTT
TATCACATAGACAAGTTCTAACTTATGCATACCATGGTTAGCTATTACTGTATTTT-TTAAAAGAAAAGAAAAAAG--TT
CCGAACCATGGTATGCAAAACAACATGAGACAACATGATTTA-------------------TTTGGCTTATAAATCTTCA
ACTTGCTATTGTAGTGTTAGTAAATGACGGAGATAATATTAAAAGATTGTGATATGTCATGGACGTTGGTCCTGCTCGGC
GGAGGTGTTCAGTTGTCGGCGTG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CAAGGCTCTAGAGCATGGCGTCTCAT
GTGCTAGTGGGGGATATCAGGTTGGGAGGTGGCGTGCCTTAGAGGGGTCTGTTCTTGGCCGGATCCGGAGGGCCGGATTG
GCTCAGTGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AGGTCTACTACCTCGGCTGCACGACATGTG
ACTA----------------------GGGAAGGTAGCCCGTGACGTGGTGTTGCCTACCGCCAATGATCCCCATCCTTGG
CGAGATTTGG-TGTGGAGGCTGGATCCAGAGGTGATCTAGGTCTTGGACCAGGTATTTCTCTAATCATGGGCCGACACTG
GTGATGTTTGATCCTGGCCAATGTTGTGTTGCAA----------------------------------------------
-----------------------------AGTCGGCCTTGGATGCCCGGCGACAGCCCCGGTAGCTGAGGCTGAACGGTT
AGCTCTGCGGTGAGTAGCGCTGCAATGGTGGTGTCATCTCTCCTTGGTTGTGTGGATGGCGAGGAGTGGGGTGGAGGGTG
ATCCAAGTGTTGTCGGCGCTTTGGCGGTGGTGGCTCCATGGTCTTGTTATGGAGTCCTTGTT------C-------AGTG
GTCCTTCCCTTGGGTTGGGTTCGTGAGCTTGGTACCTTGGTGTGACTCCAAGTGAAAGCTCCGTA---CGGCACCGCCGA
CAATGCTTGTGGGTGTCGTGTCCCTCTTGAAGGTGTCGTCATGGTTCCCCTCCTCGTGGCAGGGCTCCGGTTGAAAACCC
AA-TCCTTCTTTGCAGCCTCCGCGGTAGCGGAACGTTGCATCGCAATCCTCTTGGGGTAACGTGGAGCTCAGGTAACTTT
AGGTTGCAACGT----GCCGGCATCTTCCGGGCATGGATCATGAAATGAGGTTTCTTCGATTCTGGCATGCGGCTGTCTT
GTTGGTCTCCTACC-TTTAAAACATATCAGTTGTTACCGTTCTCAGTCATCGCTATCCGCATGTAGGTTGGCGCTCCACG
ACTCGAACCGGGAGGGCGCGGCATCACTCTCGGGCGGTTTGCTTGGTGTGTGCGTGTGGCGTAACAGTTTAGTGGTTTCC
-CAAGGA-GGAGCATTTTTCGTTCCTAGCTGATGGTCTCGCATACTTATTGTTGGGTGTGACTTCTCATG----TTTTCT
TGCTTGGCTTTGAGTTTGTGGCTTCTTCGCTCCTCTCTCAGATGTCGATTTTATTTTAACCTGCTTT-CTAAGAGAATTT
TCTCATCACCTTGTATCGGCTCGGACGTTTGGGCTTTATTTATAAAACGGGGCG-AAAATTGTTCCGACAATATGTTACT
TATCAAGTTTTGAAGGAAGAAAGGAAATAATTTAGGTATGTGTGAAGATGA-------AGTGGGAGTGAACAAAGAACGA
GAGAAAGTTACTGGACTAATTTAGACCTGAAATAACAGATTGTGTACAATATGAGTAGATGATGTGCGAGCTTTAGCCAC
ATGAATTAAGAAAG----AAATTAATCCTCAACACTTACAGCTAAAGCTAGGCACACCATTAATGTGGGAAAAGGTATAA
GTACCATCGCTGGTTTATAACA----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>chr4B_447
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TTTTTTGGT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ATGAAC
AAATCCAACAACTTTGGTCACGACGACACTTAGTGTATGGCAAAAGCTTCATGAAGAGACATCAGATCTGTAACCAAATC
TTTTTGCGTAGTGCCACCGAAACCGGCTATCTATTTAAAGGAA-CAATTTAACAATGCAATGTAGATTCAATTTCAACAG
ATCATTTATTAGCCAATTCCAAAATTGCAAACAATGGCCACATATGACCATGTTAGAAACGAGATCCACGGCAAACATCA
GGGAACCGTTAACGTTA-TGTCTGCCGCTCAATGCCTTCGTTGACGAAACAAAAACAT-------GTGGTGACAGAATAA
CACCAATTAGGATTGAGTGGCGTTTCTCGTGGACGTAGTTGGGAATCTAACTATATTTAGCACAGATGCAACCAGCAGTT
TATCACATAGATAAGTTGTAACTTATGCATACCACGGATAGCTATTTCTGTATTTT-TAAAAAGAAAAGAAAAAATAATT
CCGAACCGTGA-----------------------------TA-------------------TCTGGCTTATAAATCTTCA
ACTTGCTATTGTAGCGTTAGTAAACGACACAGAGTATAGTAAAAGATTGTGATATATCGGCGAGGTTGGTCATGCTGGGC
GGCGGTGTTCAGTTGTCGGCGTGTGAGGGCAAGGCCAACGCTCCAGGATGGACCGGTGCCCCAGCTGCCAGGTCGGCTCG
CATAGTTAAACCTGAGAAAAAGGTGCTGCTTGCAGCGCTAGATAGGATCCTGCAGAGGAGGCTGGTTCTCCCGTGAAAAA
AGTGCAAGCCAGTCAATGGGAATGCGTTGGACAATATCATTGCTGATCTCAACAGTACCTTGCTACCTTTTTGTTCAGAG
AAAAATCTACCAAACCTTAGAACACTACTACTGCTTCCGTTGGATGAAGGTAGAACTAAACAATAGCTTCAATTACTTTT
TATCTAGGTGAAGCGTGAGGCACTAGCATAGTGATGCCACCATTGTACATGCCCTGAGGCTCTAGAGCCTGACATCTCAC
GTGCTAGTGGGGGATATCAGGTTGGGAGGTGGCGTGCCTAAG-GGGGTCCGCTCTTGGCCGGATCTAGAGGACCAAATTG
GGTCAGAGCATCTACAACGGACTTTGCAAAGCCGGTCCCTCAAACGCTCGTGGATGCGTCCGGACGCGTTCGCGGGCATT
GACTGGACACGTCTTAAATTAGTTACTTTGCATCCGGCTCTCTTATATTTTATCCCCTAGATTCATACAAAACATGCAAA
ACTAATACTGCGTACTATATCTACATACTATCCTAGCTATTCTTTGTCGTCGGAGATGTCCACGACGACGGCGCCGGGTG
CCGGCTGGACGGGCGGGTAGGAGGGCTCCGGATCATCCTCCTCCTACTCGATCTCATCCATGTAGGCGAACATCTCTGCC
TCCTCCGCAGCCTCTTGCGCCTCCATCTCCTGCTGGCGACGGCGTCTTGCCTCTGCAGCCGACTCCGACCGGAAGGAATC
GAGGATGGCATGTTGCTCCGTCTGCAGATCCCTGTCGCCAGCGTCCCCCACACCTCCTCCGCCGGTGCATCGTCCTCCTC
CTCAAAGTCCTCCTCCTCCACCACCTCCTCCTCGAACTCCTCCTCCGGATCCACTGCATCCGGAGGTAGCCCTGCGGCAA
TCCGGGCATCGCGCCTAGCCCGGATCTGCTCAAGGAGCTCGAGCCGGCGCCCCGACGTCAGAAAGGGCTCGCTCCTCACC
CGGCGGCGTGGGGACATGGCTACTAGGCGGACGGGTGGGGTGAAAAGTGGCGGCGACAATGGATAGGAGGAGGAAAATGT
GGATGGATGGTAGGGTTTCGGTGCCGCCGGTCGACTTAAATAGTCGGGCAATGCACTACGTGGCCCGCCGGAGCTGCGCC
ACGCGGCGCCATCGGTCCGACGGAGGAGACGAGCTTCGTACCGCCGGGTTTGAGGGTGCTTCTGGCTAGGACCCCTTCGT
CAGTCCGACGTGGCGGGCGGGCCCGGGCGCCCCCATGCATATTCCGCCCCATATTTAGGCTGAATATGGGGGGTGCCAGT
CAGCCCGGGCATTTGAGGGTCGTTTGAGAGGCCCGTCTAGGTCAAAAAATCATGATCGGGCAGTGACCGGTCTGCCCGCC
GGGGCGTATGAGGTGGGTTTGAGAGGTCCAGTTGTAGATGCTCTCAGTGGAGACTTACTACCTCGGCTGC--------TG
ACAGTGGTGCCTCGGCGTCGCATTGCGGGTAGGTAGCCCGCGACGTGGTGCTGCCTACCGCCGGTGATCCCCATCCTTGG
CGAGATTTAA-TGTGGAGGTTGGATCCAGGTCCGATCT------------AGGTATTCCTCTAATCGTGGGCCAACACTG
GTGATGTTCGGTCCTGGCCAATGGTGTGTTGCAACACGACGGTCTCGTGCTAGCATTGTCCATGCCAAGGTGCCTTTTCC
GACGGCCTGGTGTCCTGATGTTGGTGCAGAGTCTATCTTGGATGCCCGACGACAACCCCGGTAGGTGAGG-TGAGCGGTT
AGCTCTACGGTGAGTAGCGTTGCAATGGTGGTGGCATCTCTCCTTGGTTGTGTGGATGGCAAGGAGTGGGGTGGAGGGTA
ATCCCAGTGTTGTCGGTGCTTTTGCGGTGGCGGCTCCGTGGTCTTGTTATGGAGTCCTTATT------CCAGCAGTAGTG
GTCCTTCCCTCGGGTTGGGTTCGTGACCTTGGTACCTCTGTGTGACTCCAAGTGAAAGCTCCACGGTACGGCGCTGCTGG
CAATGCTTGTGGGTGTCGAGTCCCTCGTGAAGGTGTCGTCATGGTTCCCCTCCTCGTGCCAGGGCTCCGAATGAAAACCC
TAGTCCTTCTTTGCAGCCTCCGCGGTGGCAGAACGTTGTATCGTTATCCTCTTAAGGTAAGGTGGAGCTCAGGTAACTTC
AGGTTGCAATGT----GCATCTT-----CGGGCATGGATCCTGAAGTGAAGTTTCTTTGATTCTGGCATGGGGCGGTCTT
GTTGGTCTCTTA-C-TTTAAAACATAATAGTTGTTACCGTTCTCAGTCCTTGCTATCCGCATGCAGGTTAGCGCTCCACG
ACTCGAATTGAGAGGGCGCGGCGGCACTCTCGGGTGGTTGCTTGGTTGTGCACGGC--GCGTAACAGTGTAGTGGT-TCC
-CAAGAA-GGCGCATTTATCGTTCCTAGTCTATGGTCTCAGGTACTTATTGTTGGGTGTGAATTCTCATG----TTTTCT
TGCTTGGCTTTGAGTTTGTGGCTTCTCCACTCCTCTCTCGGATGTCGATTTTATTTTAACATGCTTTTGTAAAAGAATTT
TCTCATCACTTTGTATCGGCTGGGATGTTTGGGCTTTATTTATAAAGCGGG--AAAAAATTGTGTTGACAATATGTTGGT
TATCAAGTTTTGAAGGAGGAAATGGAATAATTTAGGTATGTGTGAAGATGAGGGATGAGGCGAGAGTGAACAAAGAATGA
GATAAAGTA------CTAATCTAGACCTTACATAACAGATTGTGTACAATAC--GTAGATGGTCTGCCAGCTTTAACCAC
ATGAATTAAGAAAT---TAAATTAATCCTCGGCACT----GCTAAAGCTAGGCACACCATTTATGTGGGAAAAGGTTTAC
TC-CCATCGCTGGTATGTAACACGCGCGATGCACACGCACACGCGCACGCGCGCATAAACACGCATAATTTAGGTAGTAC
TCCCTTCATTTCGAAATAGATGACTCAACTTTATACTAACTTTAATAAAAATTGGATTAGTAAAAAATTGGGTCATTTAT
TTTGGAACGGAGAAAGTATGTGTGAAGATGAACCAAGCACGAACAAAAAACGAGAGAAAATAACTGGACTAATCTAGACC
TCAAATAACAGATTG-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>chr4D_448
TTTT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TTGT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ATGAAC
TAATCCAACAACTTTGGTTACATCCACACTTAGCGTATGGCAAAAGCTTCGTGAAGAGACATCAGATCTTTAACCAAATC
TTTTTGTGTACTGCCACCCAAACCGGCTGTCCGTTTAAAGGAA-GAATTTAACAATGCAATGTAGATTCAAATTCAACAG
ATCATTTATTAGCCAATTCCAAAATTGCAAACAATGGCCACATATGACCATGTTAGAAACGAGATCCACGGCAAACATCA
GGGAACCATTAATGTTA-TGTCTGCACCTCAATGCCTTTGTTGACGAAACAAAAACAT-------GTGGTGACAGAATAA
CACCAATTAGGATTGAGTGGTGTTTCTCGTGGACGTAGTTGGGAATCTAACTATATTTAGCACAGATGCAAACTGCGGTT
TATCACGTAGATAAGTTGTAACTTATGCATACCATGGTTAGCTATTTCTGTATTTTCTTAAAAGAAAAGAAAAAAAAAAT
CCGAACCATGA-----------------------------TACTCAAATCGCCATGATTTATCTGGCTTATAAATCTTCA
ACTTGCTATTGTAGCGTCAGTAAACGACAG-------------AGATTGTGATATGTCGGCGAGATTGGTCCTGCTGGAC
GGCGGTGTTCAGTTGTCGGCGTG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CGAGGCTCTAGAGCTTGGCGTCTCAG
GTGCTAGTGGGGAATATCAGGTTGGGAGGCGGCGTGCCTCAG-GGGGTTCGCTCTTGGCCGGATCCGGAGGGCTAGATTG
GGTCAGTGC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AGGCCTACTACCTCGGCTGCGCGACATGTG
ACGGTGGTGCCTCGGCGTTGCGTTGTGGGAAGGTAGCCCGGGACGTGGTGTTGCCTGCCGTCGGTGATCCCCATCCTTGG
CGAGATTTTACTGTGGAGGTTGGATCCAGGTGCGATCTAGGTCTTGGGCTAGGTATTCCTCTAATCGTGGGCCGACATTG
GTGATGTTCGATCCTGACCAATGTTGTGTTGCAACACGACGGTCCCGTGCTAGCGTTGTCCATGCCAAGGTGCCTTTTCC
GACGGCCTGGTGTCTTGTTGTTAGTGCAGAGTCGGTCTTGGATGCCCGGCGACAGCCCCGGTAGGTGAGGCTGAGCGGTT
AGCTCTACGGTGAGCAGCGTTGCAATGGTGGTGGCATCTCTCCTTGGTTGTGTGGATGGTGAGGAGTGGGGTGGAGGGTG
ATCCCAGTGTTGTCGGTGCTTTTGTGGTGGCGACTCTGTGGTCTTGTTATGGAGTCTTGTTCCAGCAGC-------AGTG
GTCCTTCCCTTGGGTTGGGTTTGTGACCTTGGTACCTCT-TGTGACTCCGAGTGAAAGCTCCGCGGTACGGCGCTGTCGG
CAATGCTTGTGGGTGTTGAGTCTCTCTTGAAGGTGTCGTCATGGTTCCCCTCCTCGTGCCAGGGCTCCGGATGAAAACCC
CAGTCCTTCTTTGCAGCCTACCCAGTGGCAGAACGCTGCATTGTTATCCTCTTGGGGTAATGTGGAGCTCAGGTAACATC
AGGTTGCAATATGCCGGCATCTT-----CGGGCATGGATCCTGAAGTGAAGTTTCTTCAATTCTGGCATGGGGCGATCTT
GTTGGTCTCCTA-CCTTTAAAACATAATAATTTTTAGCGTTCTCAGTCCTCACTATCCGCATGCAGGTCGGCGCTCCACG
ATTCGAATCTAGAGGGCGTGGCGGCACTCTCAGGTGGTTGCTTGGTTGTGCGCGGC--GCGTAACAGTTTAGTGGT-TTC
TCAAGGA-GGCGCATTTGTCATTCCTAGTCTATGGTCTGGGGTACTTATTGTTGGGTGTGACTTCTCGTG----TTTTCT
TGCTTGGCTTTGAGTTTGTGGCTTCTTCGCTCCTCTCTCTGATGTCGATTTTATTTTAACTTGCTTT-GTAAAAGAATTT
TCTCATCACCTTGTATCGGTTTGGACATTTTAGCTTTATTTATAAAGTAAGGCAAAAAATTGTTCCGACAATACGTTGCT
TATCAAGTTTTGAAGGAGGAAGGGGAATAATTTAGGTATGTGTGAAGATGAC-------GCGAGAGTGAACAAAGAATGA
GATAAAGTAAC-GGACTAATCTAGACCTCAAATAACAGATTGTGTACAATAC--GTAGATGGTCTGCCAGCTTTAGCCAC
ATGAATTAAGAAAA---TAAATTAATCCTCGGCACTTACGGCTAAAGCTAGGCACACCATTAATGTGGGAAAAGGTTTAA
GTACCATCGCTGGT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>SNPs
------------------------------------------S------SS----S----SSS-----------------
-S-------------------------------------S-------S----S---S--SSSSSSS-------S------
-----------S---S-------SS-S----SS---S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S-------S------
------SSS-S--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
-------S------------S-S-------S-----SS-SS-------S--------S---S--S-----------S---
-----SS---------------S-----------------S--S--------SS-S----------S-------------
----------S--S---S------------------S-------S---------------------S-------------
-------SS---SSSSSS---S---S--------------------------------SSSSSSS----------S----
---S---------------------S------------------------------------------------------
-----------------------------------------------S----S---------------------------
-S---------------------------------------------------------------S--------------
---S--------S-------------------S---S-------S----------------------------S------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
---S-----------------------------------------S-------------S--------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
------------S--------------------------S----------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S----------------S----------------------------------S----
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
-----------------S---S----------------------------------------------------------
-S----------------------------------------S--S----------------------------S-----
-----------------------S----------S-S------S------------------------------------
----S--------------S-S---------------S--------------------------S---------------
------SS-----------------------S------S-S-------S-------------------S-SSSS----S-
------------------------------S-------------------------------------------------
-----------------S-----------SS----S--SS----------------------------------------
--------------------------------------------------------------------------------
--S--------S--S--------------------------------S------S-------------------------
----S----S--S-SSS-S--------S-------S----S-----------------------S-----------S---
--------------S---------------------------------S-S-S--S-S-SSSS--S---------S----
--------------------------------------------------------------------------------
--------------------------------S-------S--S-----SS----S-SS-SS------------------
---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_917
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TTATGCCGACACTCAGCGTT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>reverse_4557
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------GTAC
TCCCATCGCTGGTCTG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
