>input_sequence_68537
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----------------------------------------ATGGCGTCAGGTGCACCTGGTATCATGCTCCGACACCTTT
CCAAAACACTTGCTGTAAGCC------CAGCAGTGGCATCTGGTATGACCAGCCAGCATCACCAGCTTCAACAGCGTGCA
CCAGTGGGTGGCACATCCAAAGGCAAGGCTAAGCTCAAAGCCGGCCTGCCTTTGAAGCGCAGCGTCATAGCAAAGAA-GG
GGGGCGCGCCTGCCACTGCTGGGAGCGGTGGTGCTGGCCGTGGTCGTCGTGAAGCCATTGAGCGCATTACTCAGATTGCA
GAGTCTTGTCTGAAGTCCTCTACTCCTCTACGGCACTTGTCCCCCAAGGAGTGTCTTCGCGAGGCAAAACGTGAGGAGCT
TGGACTCATCTCCAAGGAACGACAACGTGAACTTGATATTGCCAAGGCTAAAGCCAA------GTCCAAAGGTACCATTG
GAGGTGATGGTGGCCGTGTTCTGATGGGTCCACCTGGCCTTGACTATATCAGTCTTGGCCTTGTAGATGAGAAGACCATC
CCTACTTATGAGCTGACAGTTGAGGATGGTCGGCGTCTTGCCAAAGAATACAGCCGTGTGCTAATGCAACGACACCGTGC
ACGCCAAACTGCGGAATCAACACTTTTGAGCCTCAAGAAGGAGGCCGTTGCTGCACTCCCCGAGAAGCTGCAAGCTGCTG
CTATGGTTCCTGACATGACACCATTCCCTGCAAACCGGTACATGGCAACACTCACGCCACCAATTGAAGGGTATATTGAA
AAGGTGCGAGATGCTGCCAAGAAGTATTCTGTGAAAGAGAAGCTTCGCTGA-----------------------------
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>chr1D_1_TraesCS1D01G149000
GCCTCACGCTCATCGGCGATGGACTGCTCGAAAGCTCGTCAGACCTCCATCATCTCAGCGTCTGTGCAAGCCAGGCGGCC
GCCTTAGTGTTGACGTGCTCCACTGCCCGGTGCTCCTCCTCATCGAGCAAAGCACGCTCATACTCTCTCCGCCTCCTCCC
ACGAGAAGCTGGCGCCGGCGCCACCCTTCTCCTCGGCTTCATCCGCCGGCCTGTCCTCCACCTTTGCCTCGCCCCCTCCT
CCTCTTCCTTGGCTTTCGACGCCACAGCCGCTGCAAGCTGCGCCGCCTCTTGCTCGTCGCCAGAGTTGTGTGCCGATGAC
GAGTTGATGGGCATGACATCCGCCATGGTGATCCTCCGCTGCTCACCCCATTACAGGAGGCTGGTGATTCCAGCGGCGAC
GACGACGAAATCGAGCGGCGGCGGCGGTGATTTGGGTAGAAATGGGGGTGGCGGTGAAGGATTTAGGGTTTGTGTGGGGC
GCCGATGTGAATTTTATACCGGCGGGCCGTCAATTTAGTGTCTCGCTGTCGGTTGAGCCATTTTTCCAGTGAGAGGAGCA
CAAAGGAGATTTGATGGGAAGTGGTGTTGCTCTCTCAATTTCGAGCCAAAAAGGAATCTTTTTAGGCTTAACTCAATTTT
TTGGAGGTATAGGTTTGAGAGTTCGGTTAGGTGGCGTTTAACTTCCCAAAAGATGCAGATTTTTATATTAGTTATAAAGA
AATTTGAGAGTTCCGGTACAGATGGTCTTAGCTACTTAAGGTAGTTTATTTTGGTTTTGCACGAATAACTAAGAAATTAC
ATGTCTATTTGTTATCATTTATTCTGAAAAATATAAGCTGAACCAAAATGATTGATGATTTTGTCATGGTACTTTGCTAG
CTTGTGATGATTTCAGAGGTTAATAACGTTGATTTTTGAAGTAACTCCCCGTATGAAAAGTCAAGTGATTCAAGAGCCAA
CATAGTGAGGTGTTTGTGATTTGTGCAGACAAGGTGATCAATGGCGTCAGGTGCACCTGGTATCATGCTCCGACACCTTT
CCAAAACACTTGCTGTAAGCC------CAGCAGTGGCATCTGGTATGACCAGCCAGCATCACCAGCTTCAACAGCGTGCA
CCAGTGGGTGGCACATCCAAAGGCAAGGCTAAGCTCAAAGCCGGCCTGCCTTTGAAGCGCAGCGTCATAGCAAAGAA-GG
GGGGCGCGCCTGCCACTGCTGGGAGCGGTGGTGCTGGCCGTGGTCGTCGTGAAGCCATTGAGCGCATTACTCAGATTGCA
GAGTCTTGTCTGAAGTCCTCTACTCCTCTACGGCACTTGTCCCCCAAGGAGTGTCTTCGCGAGGCAAAACGTGAGGAGCT
TGGACTCATCTCCAAGGAACGACAACGTGAACTTGATATTGCCAAGGCTAAAGCCAA------GTCCAAAGGTACCATTG
GAGGTGATGGTGGCCGTGTTCTGATGGGTCCACCTGGCCTTGACTATATCAGTCTTGGCCTTGTAGATGAGAAGACCATC
CCTACTTATGAGCTGACAGTTGAGGATGGTCGGCGTCTTGCCAAAGAATACAGCCGTGTGCTAATGCAACGACACCGTGC
ACGCCAAACTGCGGAATCAACACTTTTGAGCCTCAAGAAGGAGGCCGTTGCTGCACTCCCCGAGAAGCTGCAAGCTGCTG
CTATGGTTCCTGACATGACACCATTCCCTGCAAACCGGTACATGGCAACACTCACGCCACCAATTGAAGGGTATATTGAA
AAGGTGCGAGATGCTGCCAAGAAGTATTCTGTGAAAGAGAAGCTTCGCTGAGTTCAATTCAATCCATATAAGGTGGCTGA
GAGTTCTGGAACTTTTTCTTATGTTGTATTCTTGAGAATCTGTCAGTTTTGCTGACTTCGTGCTGTTTTTGCCTCTAATA
ATCAGATAGCGGTAATAAACTGCCACGATTTTGCTTTGCAAGACCATGTTATTTTGGCTGAATCTTTTTACTCCAGTTTT
GCTGTGTAGCACAAATTGATATGTTGAACTAAAATCAAGAAAAGTTTGTTGCTTTGAAATGATGCTTATACTGAAAGTAT
CCTGCCAAGGTTACTAGAAAAATGACTTGTCCAAGCTTTAAGTAGTAGAGTACTTACGTAAATGTTATGTTGCTTTCCAT
CAATATTTTTGAGTTTATTGCGAGTAATGTGCCTTGGCCCCTTAGAAGATACATTTATTAAGTTTAATTGTAGCCATTAG
TGAGTGCAGATATAGTGATGATGCTGAGTGTTTGTTTGTGCGTGCTAGTACCAGAATAACTTCGTTTTTGTGGATCATGG
CTGCGAGATCTAAGGTATACAAGAGCATCTACAGCTGGACCTCTCAAACACGCGGGCAGACCGTCCGATCACTGATCGGT
CACAAAAAAACGGATCCAACCGGAGCTCTCAAACCGCGGACAAACGTCTGGGTTGGACGGCATCCCTCATATCCAGCCCA
AACGTAGAGCGGATATGAGGCAGCCCGGGCGTGTCCGCCACGTCAGCCCGGCCCACCGTTGGCCCACCCTGACCCAACAA
AATCCTCCTCCGGAGCAAACCCTAGCTCACTCCGCTCCGCTCTGCTCCCTGACGCCCCCCTTTCCCCAATCCGTCCAATC
TCTAGCGCCGGCGAGCATCTCCAGCACCGGTAGTCACTCCGACGGCAGCTCCGGAGACGAGGACGGCTGGCGCTTCGTAT
CGCGCTCGAGCGCTCGCGGGTCAATATGGGTGGCAGCTCCAGGTCAGGTGCGACGCCACCTGTCGCCGCAGCGCCAACGC
CGGCACTAGAC
>chr4A_973
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------------TTTCTGGTTTGTGCAGCCAAGGTGATCCAATGGCTTCA--------GGCATCATGCTCCGACGTCTTT
CCAAGACACTCACCATGAGCCCAGCAGCAGCACTGGCATCTGGTATGACCAGCCAGCATCACCAGCTTCAGCAGCGCGCA
CCGGTCAGCGGCACGTCCAAGGGCAAGGCCAAGCTCAAAGCCGGGATGCCTCTGAGGCGTAGCGTCATAGCGAAGAA-GG
GGGGCGCGCCTGCCACTGCTGGGAGCGGCGGCGCTGGCCGTGGTCGCCGTGAAGCCATCGAGCGTATTACTCAGATTGCA
GAGTCATGTCTCAAGTCCTCCACTCCTCTACGGCACCTGTCCCCCAAGGAGCGTCTCCGCGAGGCAAAGCGTGAGGAGCT
TGGGCTCATCTCCAAGGAACGGCAACGTGAGCTTGACGCTGCCAAGGCTAAAGCTAAAGCTAAATCCAAGGGTGCCAGTG
GAGGTGATGGTGACCGCGTTCTGATGGGTCCGCCGGGCCTTGACTATATCAGTCTTGGTCTGGTGGATGAGGAGGCTATC
CCTGAGTATGAGCTGACAGTTGAAGATGGCCGGCGTCTTGCCAAAGAATACAGCCGTGTGCTAATGCGACGACACCGTGC
ACGTCAAACTGCAGAGTCAACGCTCTTGAGGCTCAAGAAGGAGGCCATTGCTGCGCTCCCTGAGAAGCTGCGGGCTGCTG
CTATGGTTCCTGACATGACCCCGTTCCCTGCAAACAGGTACATGGCAACACTCACGCCACCTATTGAAGGGTATATTGAA
AAGGTGCGAGATGCTGCCAAGAAGTATTCAGTGAAGGAGAAACTTCGTTGAGTTCGATTCAA------------------
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>chr5B_973
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------------TTTCTGCTTTGTGCAGCCAAGGTGGTGCAATGGCTTCA--------GGCATCATGTTCCGACGCCTTT
CCAACACACTCACCATGAGCCCAACAGCAGCACTGGCATCTGGTATGACCAGCCAGCACCACCAGCTTCAGCAGCGTGCA
CCGGTGAGCGGCACGTCCAAGGGCAAGGCCAAGCTCAAAGCTGGGATGCCTCTCAGGCGTAGCGTCATAGCGAAGAAGGG
GGGGCGCGCCTGCCACTGCTGGGAGCGGTGGCACTGGCCGTGGTCGCCGTGAAGCCATCGAGCGTATTACTCAGATTGCA
GAGTCTTGTCTGAAGTCCTCTACTCCTCTGCGGCACCTGTCCCCCAAGGAGCGTCTTCGCGAGGCAAAGCGTGAGGAGCT
TGGGCTCATCTCCAAGGAACGGCAACGTGAGCTTGACGCTGCCAAGGCTAAAGCTAAAGCTAAATCCAAGGGTGCCAGTG
GAGGTGATGGTGACCGCGTTCTGATGGGTCCGCCGGGCCTTGACTATATCAGTCTTGGTCTGGTGGATGAGGAGGCTATC
CCTAAGTATGAGCTGACAGTTGAAGATGGCCTGCGTCTTGCCATAGAATACAGCCATGTGCTAATGCGACGACACCGTGC
ACGTCAAACTGCAGAGTCAACACTCTTGAGGCTCAAGAAGGAGGCCATTGCTGCACTCCCTGAGAAGCTGCGGGCTGCTG
CTATGGTTCCTGACATGACCCCGTTCCCTGCAAACCGGTACATGGCAACACTCACACCACGGATTGAAGGGTATATTGAA
AAGGTGCGAGATGCTGCCAAGAAGTATTCAGTGAAGGAGAAACTTCGCTGAGTTTGATTCAA------------------
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>chr4A_1022
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-------------------------------------------------------------ATCATGTTCCGACGTCTTT
CCAAGACACTCACCATGAGCCCAGCAACAGCACTGGCATCTGGTATGACCAGCCAGCACCACCAGCTTCAGCAGCGTGCA
CCGGTGAGTGGCACGTCCAAGGGCAAGGCGAAGCTCAAAGCTGGGATGCCTCTGAGGCGTAGCGTCATAGCCAAGAA-GG
GGGGCGCGCCTGCCACTGCTGGGAGCGGCGGCGCTGGCCGTGGTCGCCGTGAAGCCATGGAGCGTATTACTCAGATTGCA
GAGTCTTGTCTGAAGTCCTCCACTCCTCTACGGCACCTGTCCCCCAAGGAGCGTCTCCGCGAGGCAAAGCGTGAGGAGCT
TGGGCTCATCTCCAAGGAACGGCAACGTGAGCTTGACGCTGCCAAGGCTAAAGCTAAAGCTAAATCCAAGGGTGCCAGTG
GAGGTGATGGTGACCGTGTTCTGATGGGTCCGCCGGGCCTTGACTATATCAGTCTTGGTCTGGTGGATGAGGAGACTATC
CCTGAGTATGAGCTGACAGTTGAAGATGGCCGGCGTCTTGCCAAGGAATACAGCCGTGTGCTAATACGACGACACCGTGC
ACGTCAAACTGCAGAGTCAACGCTCTTGAGGCTCAAGAAGGAGGCCATTGCTGCACTCCCTGAGAAGCTGCGGGCTGCTG
CTATGGTTCCTGACATGACCCCGTTCCCTGCAAACCGGTACATGGCAACACTCACGCCACCGATTGAAGGGTATATTGAA
AAGGTGCGAGATGCTGCCAAGAAGTATTCAGTGAAGGAGAAACTTCGCTGAGTCCGATTCAA------------------
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>chr1B_1062
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---------------------------CAGCAGTGGCATCTGGTATGACCAGCCAGCATCACCAGCTTCAGCAGCGTGCA
CCAGTGAGCGGCACATCCAAGGGCAAGGCAAAGCTCAAAGCTGGGATGCCTCTGAGGCGCAGCGTTATAGCAAAGAA-GG
GGGGCGCGCCTGCCACTGCTGGGAGCGGCGGCGCTGGCCGTGGTCGCCGTGAAGCGATCGAGCGGATTACTCAGATTGCA
GAGTCTTGTCTGAAGTCCTCTACTCCTCTACGACACCTGTCCCCCAAGGAGCGTCTTCGCGAGGCGAAGCGTGAGGAGCT
TGGGCTCATCCCCAAGGAACGGCAACGTGAGCTTGATATGGCCAAGGCTAAAGCTAAAGCCAAGTCCAAGGGTGCCAGTG
GAGGTGATGGTGACCGTGTTCTGATGGGTCCACCAGGCCTTGACTATATCAGTCTTGGTCTTGTAGATGAGGAGGCTATC
CCTGAGTATGAGCTGACAGTCGAAGATGGCCGGCGTCTTGCCAAAGAATACAGCCGTGTGCTAATGCGACGGCACCGTGC
ACGTCAAACGGCAGAGTCGACTCTCTTGAGGCTCAAGAAGGAGGCCATTGCTGCGCTCCCTGAGAAGCTGCGAGCTGCTG
CTATGGTTCCTGACATGACGCCATTCCCTGCAAACCGCTACATGGCAACGCTCACGCCACCCATTGAAGGGTATATTGAA
AAGGTGCGAGACGCTGCCAAGAAGTATTCTGTGAAGGAGAAACTTCGCTGAGTTCATTT---------------------
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>chr5D_1062
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---------------------------CAGCAGTGGCATCTGGTATGACCAGCCAGCACCACCAGCTTCAGCAGCGTGCA
CCGGTGAGCGGCACGTCCAAGGGCAAGGCCAAGCTCAAAGCTGGGATGCCTCTGAGGCGTAGCGTCATAGCGAAGAA-GG
GGGGCGCGCCTGCCACTGCTGGGAGCGGCGGCGCTGGCCGTGGTCGCCGTGAAGCCATCGAGCGTATTACTCAGATTGCA
GAGTCTTGTCTGAAGTCCTCCACTCCTCTACGGCACTTGTCCCCCAAGGAGCGTCTCCGCGAGGCAAAGCGTGAGGAGCT
TGGGCTCATCTCCAAGGAACGGCAACGTGAGCTTGACGCTGCCAAGGCTAAAGCTAAAGCTAAATCCAAGGGTGCCAGTG
GAGGTGATGGTGACCGTGTTCTGATGGGTCCGCCGGGCCTTGACTATATCAGTCTTGGTCTGGTGGATGAGGAGGCTATC
CCTGAGTATGAGCTGACAGTTGAAGATGGCCGGCGTCTTGCCAAGGAATACAGCCGTGTGCTAATGCGACGACACCGTGC
ACGTCAAACCGCAGAGTCAACGCTCTTGAGGCTCAAGAAGGAGGCCATTGCTGCGCTCCCAGAGAAGCTGCGGGCTGCTG
CTATGGTTCCTGACATGACCCCGTTCCCTGCAAACAGGTACATGGCAACACTCACGCCACCGATTGAAGGGTATATTGAA
AAGGTGCGAGATGCTGCCAAGAAGTATTCAGTGAAGGAGAAACTTCGTTGAGTTTGATTCAA------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS---S--S---------S----------S-SS-SS-SSSSSSSSSSS--S-------------S-----
----S-----SS-SS-S-----------------------------------------------------S---------
------S-------------S--------S--------------SS-----S---S------------------------
-------------------------------S--------------S-----------S-----S---------------
---------------------------------------------------S----------------S-----------
---S-----------------S--------S-----------------------S--------------S---S---S--
------------S---------------------S-----------------------S------------S----S---
----SS-----------------S-----S-------------------------------------S------------
---S--------S--S--------S-----S---------------S-------------S----------S--------
-------------------S-----------------------------------------S------------------
-----------------------------------S-----S--------------------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_465
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---------------------------------------------GGGTGGCGGTGAAGGATTTA---------------
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>reverse_2353
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--------------------------------AGCTGGACCTCTCAAACACG----------------------------
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