>input_sequence_68520
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---------------------------------------------------------ATGGCTACTAAGGAGTTATCGAT
GAAGCTCCTGATTGATACCAAGGCTCAGAAAGTCTGCTTTGCCGAGGCTGACAATGAAGTGGTCGAGTTGCTGTCCAGCC
TCCTATGCCTCCCGATGAGCACCGTCATCAACCTGCTCACCAAAGAGCGTATGGTTGGCATCATTGGGAATGTTCTTGAT
AGCCTGGAGACGCTTGATGCCACGTATGTATTCTCAACCAAGGGCAAGGAGCCCTACATCAAGCCAACAATTTCCCCCGG
TATGCTCTCTCCCTTGCAACAGCTGATGGGGGATGCACAGTTAAATGCCTGTAGCAGATTCTTCACCTGTGAGGGGAAAA
GATGCTGCTACACAAGCCATAGTTGTGGGTATTTTTCAGTTGCTAAAGGCAGCAAATGCCCAAGTTGCTCCACCGGAATG
AACAAAGCTATACTGCATGTCAAAAGTGAGGGGTTTGTGGTCGGGACAGCCACGTATACAGTCAAGGACGATCTCTCGAT
GATACCGGCGTCCAGCGTGGCAAGCATTGCCTTGCTCGCCCAGTGCGGTGTCAAGGACCTGAGCATGCTGCAAGAAAAAA
TGGTGAAGATTGGCAAGGAAGAGGTTACACACATACTCTCTTATTTTTATCACTAGTTTCCCATGTGG-TTTTGATTAAT
TGGTGCAGTTCATGATATCTGTGTTGGAATG--TCAGGCGCTGGACATACTCCTTGCTTCGCTGAAGTCCAAGACCGTCC
TGACTGATGTCTTCCTTCAGACAAGAAAAGCTCGTTGCAAGAAGGAAACTGTTGCTTAG---------------------
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>chr7D_1_TraesCS7D01G460400
TGGTGAGCTGGGGATGATTATTACAATTAAGGGTTAGTGTTTACA--TTTTTTTTAGCATCATTGTTCGAAACTTGTTTT
AATCAATTTTATAAATGGCACACCACAAACAAA-ATGTAAAATAGATGATTTAGTCTGAACCCA-TTTTTCCTGTACACA
GTTTGCTTAATAACAATCGTCTGCGGAGAGATCTTTCATTAAACACTATTATCAATAGGATGCCGCGCCGC-CCTGGTAC
AATAA-CATCTAGTCCCATTGTCCACTTGACTTTCAAGACTCAATCTGGAAAAAAGTGTCGTTGCTTCTATAGTTATCA-
-------GCTTTTTCATATCTGCGACCAAATCTCATACGGAACCTTGTGGCTTGTGCAGTAATGTTCAGACCCATACCTT
GCTTTTGTAAGTATTATCTTTTGCATA----GTTAAAATATCAGTAATAAGTGCTCCCTACGTCCCAAAATTAGTGTCTA
CTAAAGTTGAGACACTTAATTTGGGACGGAGGGTGTAGTAATTGGGCAAGGAGGGAAGAAATAACAAACTTGAGTAGGGT
AAAGCTACTATCTCTGTGTGTTTCTCCTTTTCAAAGTCTGGTCGGAGCACAATATTCCAGAGTTGTATTCTTATAGG---
--------------------------------------------------------------CTTTCAATATAACCCGTG
ACCTTGGCCGTTTATCTAATTTTATAGTCCCTCCGTCCCAAAATAATTGTTGTGGCCATGACTCTTATTTTGGGACAGAG
GGAGTATATAATAACAACAAACTGTTAATATGCATGATTGGTATGTCTTGTGGTCTTCTTATTATATTTTCTGGTGTCCT
CACTATTTAATTTTTGGGTTACAGTCTCACAAAATTTGTTACTCTATTTGGCTCTAATAATTGATTGT-G-ATTTTTTTA
TTTTGCTCATTTTGATGATCTGAACTAGAACACTGCCTAATTTTGAATGCCTTAGTTGACCCTGTTTTGCTAG-TGCAGG
AGTAGAAACCGATCAATTGAAAACATTCGG-----------ATAAAAAGGGAATATCATGGCTACTAAGGAGTTATCGAT
GAAGCTCCTGATTGATACCAAGGCTCAGAAAGTCTGCTTTGCCGAGGCTGACAATGAAGTGGTCGAGTTGCTGTCCAGCC
TCCTATGCCTCCCGATGAGCACCGTCATCAACCTGCTCACCAAAGAGCGTATGGTTGGCATCATTGGGAATGTTCTTGAT
AGCCTGGAGACGCTTGATGCCACGTATGTATTCTCAACCAAGGGCAAGGAGCCCTACATCAAGCCAACAATTTCCCCCGG
TATGCTCTCTCCCTTGCAACAGCTGATGGGGGATGCACAGTTAAATGCCTGTAGCAGATTCTTCACCTGTGAGGGGAAAA
GATGCTGCTACACAAGCCATAGTTGTGGGTATTTTTCAGTTGCTAAAGGCAGCAAATGCCCAAGTTGCTCCACCGGAATG
AACAAAGCTATACTGCATGTCAAAAGTGAGGGGTTTGTGGTCGGGACAGCCACGTATACAGTCAAGGACGATCTCTCGAT
GATACCGGCGTCCAGCGTGGCAAGCATTGCCTTGCTCGCCCAGTGCGGTGTCAAGGACCTGAGCATGCTGCAAGAAAAAA
TGGTGAAGATTGGCAAGGAAGAGGTTACACACATACTCTCTTATTTTTATCACTAGTTTCCCATGTGG-TTTTGATTAAT
TGGTGCAGTTCATGATATCTGTGTTGGAATG--TCAGGCGCTGGACATACTCCTTGCTTCGCTGAAGTCCAAGACCGTCC
TGACTGATGTCTTCCTTCAGACAAGAAAAGCTCGTTGCAAGAAGGAAACTGTTGCTTAGTTATGCGGCTATGCCTCAGTA
AATTCACCAGAC--ATGTCATGCAGAAATCACCATATGGCCCTGGTGGATGAGTGAGTTGTGAGCTGCCGGTCTGATTGC
ATTGCCTGGCCATTCTCTAGGTTAGTGGACCAAAGCTAGTAGGCTGCTTAAATTAAAATCTCTGTTGACATCATGTACTG
-----TGTGTGCCACTTTTGCCAACAGAGAGTTTTAGGAGATTTTTTAGGAAGATATTTGTATGAACCTTTTTTTTTGGA
TTTGAAACAAGCTTCTGAATTATAAACTGTTTTCACTATTGACTTCCTTGCACGATATCTTCGAAACTAAATCACATGTT
GTGTCTCCT--ACGCCTCGCCAAGTCAGAAGTCAGGTATGAATGATGACACACATTAGAGAGCTTGTGGTCTTTGAGTCC
CTAGAATCTTCGGCCCTAGATCCGGGATTGTTTTTGGCGCTTCGTCCTGTCATGTCGATAGTGGTCGCAAGTGTGA--TG
CCAATTTGCTTTAGTTAGTGTCTCTCCCATGTCACCGTTTTTACGATGACGTCATTCTTTCCCAACCGTATGACAATGAA
GCAGCGGTTCAACATTGTAAAATCCTACTTCAGACTGGGCGTCGT-TGTTTGTTTCTTTGAACTGAGGGTTAGAGAAAAT
TGGAGATGTAACAGAGTAAGCTAGGGAGAATGGT------------TAATGTTAACTTTAGTTTTTCTATCAAAGGTCCT
TGTTGTCTTGGCGGGGGGAGATTTCTCCACGTGAATATACTGCTAGATATATCCGCTTGAGCGTCAATTAATATGAGACG
GAGA----------------------------------------------------------------------------
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--------------------------------------------------------------------------GAGTTA
CTGAAGTGTAACCATGATTACAAGACAAAATTAC----ATAGAACGTTTGCACATGCGGAGAATTAGCTAG--CGTCCTC
ATCTGTAGAACTAGATCTTCGGTGACGGTAACAATATGAATATGGTAAGTAGACTAGAAGGCCTTATGTCGCATGCACCG
AGGGGAGGGGGTAACATGCAACCCCAAAGATCTGCAATC
>chr7B_1
TGGTGAGCTAGGAATGATTATTACATTGAAGGGTCAGTGTTTACAATTTTTTTTTGGCATCATTGTTTGAAACTTGTTTT
AACCAATTTTATTAATTGCACACCACAAACAAAAATGTAAAATAGATGATTTAGTATGAACCCA-TTTTTCTTGT--ACA
GTTTGCTTAAAAACAATCGTCTGCAGAGAGGTCTTTAATTAAACATTATTATCAGTAGGTTGCCCCGCTGCACCTGGTAC
AAT-AACATCCTGTCCCATTGTTCACTTGACTTTCAAGACTCAATCTGGGAAAAAGTGTCGTTGCTTCTATAGTTATCA-
-------GCTTTCTCATATCTGCGACCAGATCTCATACGGAATCTTGTGGCTTGTGCGGTAATGTTCAGGCTTATACCTT
GCTTTTGTAAGTATTATTGTTTGCATATCTAGTTAAAATATCAGTAATAAGTGCTCCCTCAGTCCCAAAATAAGTGTCTA
CTAAAGTTGAGACACTTAATTTGGGACGGAGGGAGTAGTAATTGGGCAAGGCGGGAAGAAATAACAAACTTGAGTAGGGT
AAAGCTACTATCTCTGTGTGTTTCTCCTTTTCAAAGTCTGGCCGGAGCACAATATTCCAGAGTTGTATTCTTACAGG---
--------------------------------------------------------------CTTTCAATGTAACCCGTG
ACCTTGGCCGTTTATCTAATTTTATAGTCCCTCCGTCCCAAAATAATTGTTGCGGCCATGACTCTTATTTTGGGACGGAG
GGAGTATATAATAACAACAAACTGTTAATATGCATGATTGTTATGTCTTGTGGTCTTCTTATTATATTTTCTGGTGTCCT
AACAATTTAATTTTTGGGTTATAGTCTCACAAAATTTGTTACTCTATTTGGCTCTAATAATTGATTGT-G-ATTTTTTTA
TTTTGCACATTTTGATGATCTGAACTAGAACACTGACTAATTTTGAACGCCTTAATTGACCCTATTTTTCTGG-TGCAGG
AGTAGAAACCGATCAATTAAAATTATTCTG-----------ATAAAAAGGGAATATCATGGCTACTAAGGAGTTATCGAT
GAAGCTCCTGATTGATGCCAAGGCTCAGAAAGTCTGCTTTGCCGAGGCTGACAATGAAGTTGTCGAGTTCCTATCCAGCC
TCCTATGCCTCCCGATGAGCACCGTCATCAACCTGCTCACCAAAGAGCGTATGGTTGGCAGCATTGGGAATGTCCTTGAT
AGCCTGGAGACGCTCGATGCCACGTATGTATTCTCAAGCAAGGGCAAGGAGCCCTACATCAAGCCAACAATTTCCCCCGG
TATGCTCTCTCCTTTGCAACAGCTGATGGGGGATGCACAGTTAAATGCCTGTTGCAGGTTCTTCACCTGTGAGGGGACAA
GATGCTGCTACAAAAGCCATAGTTGTGGGTATTTTTCAGTTGTTAAAGGCAGCAAATGCCCAAGTTGCTCCACCGGAATG
AACAAAGCTATGCCGCATGTCAAAAGTGAGGGGTTTGTGGTCGGGACAGCCACGTATACAGTCAAGGATGACCTCTCGAT
GATACCGGCGTCCAGTGTGGCAAGCGTTGCCTTGCTCGCGCAGTGTGGTGTCAAAGACCTAAGCACACTGCAAGAAAAAA
TGGTGAAGATTGGCAAGGAAGAGGTTACACACATATTCTCTTATTTTTATCACTAGTTTCCCATTTG--TTTTGATTAAT
TGGTTCAGTTCATGATATCTGTGCTGGAATG--TTAGGCTCTGGACATACTCCTCGCTTCGCTGAAGTCCAAGACGGTCC
TGACTGATGTCTTCCTTCAGACAAGAAAAGCTCGTTGCAAGAAGGAAACGGTTGCTTAGTCATGCGGCTATGCCTCAGTA
AATTCACCAGAC--ATGTCATGCACAAATCACCATATGG-CCTGGTGGATGAGTGAGTTGTGAGCTGCCGGTCTGTTTGC
ATTGTCTGGCCATTCTCTAGGTTAGTGGACCAAAGCTAGTAGGCTGCTTAAATTAAAATCTCTGTTGACATCATGTACCG
TGAGATGTGTGCCACTTTTGCCACCAGAT--TTTTAGGAGATTTTTTAGGAAGATATTTGTATGAACCTTTTTTGAGGGA
TTTGAACCAAGCTTATGAATTATAAACAGTTTTCACTATTGACTAACTTGCGCAATGTCTTCAAAACTAAATCACATGTT
GTGTCTCCTCTACGCCTCGCCTGGTCGGAAGTCAGGTATGAGTGATGACACACATTAGAGAGCTTGTGGTATTTGTGTCC
CTAGAATCTTCGGCC-TAGATCCAGGGTTGTTTTTGGCGCTTTGTCCTGTCATGTCGATAGTGGTCGCAAGTGTGA--T-
-CAATTTGCTTTAGTTAGTGTCTC-CCCATGTCACCTGTTTTACGACGTCGGCATTCTTTCCCGACCACATGACAATGAA
GCAACGGTTCAACATCATAAAATCCTACTTCAAACTGGATGTCGTCTGTTTGTTTCTTTGACCCGAGGGTTAGAGAAGAT
TGGAGATGTAA---------------------------------------------------------------------
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>chr7A_1
TGGTGAGTTGGAGATGGTTATTACATTGAAGGGTTAGTGTTCACATTTTAGTTTTTGCATCATTGTTCGAAACTTGTTTT
AAGCAATT---------GCACACCACAAACGAAAATGTAAAATGGTTGCTTTAGTCTGAACCTTTTTTTTCTTGT--ATA
GATTACTTCAAAA-AATCGTCTGCAGAGAAACCTTTCATTAAACACTATTATCAGTATGATGCTGCGCTGCACCTGGTAC
AAT-A-CATCTAGTCCCATTGTTCACTTGACTTTCAAGACTCAATCTGGAAAAAAGTGTCGTTGCTTCTATAGTTAATTA
GTTATCCGCTTTTGCATATCTGCGACCGAATCTCATGCGGAACCTTGTGGCTTGTGCAGTAATGTTCAGTCCCATACCTT
CCTTTTGTGAATATCATATTCTTCTTATCTAGTTAAAATATCAGTAGTAATAAGTAGTACTAATTGGCAGAACTAACGAA
--------------------------------------------GGCAAGGAGGGAAGAAATAACAAACTGTAGTAGGAT
AAGGCTAGTATTTCTGTGTGTTTCTCCTTTTCGAAGCGTGGTAGGTGCACAATATTCCAAGTTGTGTTCTATATATATAC
GTCCTAAAAACTCTGTTGCTTTCTGCAACTTCTAAAAGCCCGTAGCCGGCTATCAGCTGTGCCTTTCAATATAACCCGTG
CCCTTGGCCTTTTATCTAATTATAT-------------------------------------------------------
--AGTATATAATAAAAACAAACTGTCAATATGTATGATTGTTATGTCTTGTGGTCTGTTTATGATATTTTCTACTGTCGT
TACTAATTAATCTTCGGGTTACAGTTTGACAAAAGTTGTTACTCTATTTGGCTCTAATAGTTGATGGTAG-ATTGTTTAT
TTTTGCTCATTTTGAAGATTTGAACTAGAACACTGCCTAATATTGAAAGCCTTAGAGGACCCTTTCTTGTTGGTGGCAGG
AGTAGAAACCAATCAATTGAAATCATTCTG-----------ATAAAAAGGGAATATCATGGCTACTAAGGAGTTATCGAT
GAAGCTCCTGGTTGATACCAAGGCTCAGAAAGTCTGCTTTGCCGAAGCTGACAATGAAGTCGTCGAGTTCCTGTCCAGCC
TCCTATGCCTACCGATGAGCACCGTCATCAACCTGCTAACCAAAGAGCGTATGGTTGGCAGCATTGGGAATGTCCTTGAT
AGCCTGGAGACGCTTGATGCCAAGTATATATACTCAGGCCAGGGCAAGGAGCCCTTCATCAGCCCTGCAATTTCCCCCGC
TATGCTCTCTCCTTTGCAACAGCTACTGGGGGATGCACAATTCAGTGCTAGTAGCAGCTTCTTCACCTGTAATGGACTAA
GAATCGGCTACACAAACTCTAGCTGTGGGTATTTTTCAGTTGCTAAAGGCAGCAAATGCCCAAGTTGCTCCAGCGGAATG
AACATTGCTATGCCGCATGTCAAAACCGAGGGGTTTGTGGTTGGGACGGCCACATATACAGTCAAGGATGATCTCTCAAT
GATCCCTGCGTCCAGCGTGGCAAGCGTTACCTTGCTCGCGCAGTGTGGTGTCAAGGACCTGAGCATGCTGCAAGAAAAAA
TGGTGAAAATTGGCAAGGAAGAGGTTACACGCATACTCTCTTATTTCTATCACTAGTTTACCATTTAGTTTTCGATTACT
TGGTGCAGTTCATGATATCTGTGTTTGGAATGTTTAGGCGCTGGACATACTCCATGCTTCTCTGAAGTCCAAGACCGTCC
TGACTGATGTCTTCCTTCAGTCAAGAAAAGCTCGTTGCAAGAAGGAAACTGTTGCCTAGTTATGCGGTTATGCCCAAGTA
AATTCAGCAGAAAGATGTCATGCAGAAATCACCATATGGCCCTGGTGGATGAGTGAGTTGTGAGCTGCCGGTCTGTTTGC
ATTGCCTGGCCATTCTCTAGGTTAGTGGACCAAAGCTAGTAGGCTGCTTAAATTAAAATCTCTGTTGACATCATGTACCG
TGAGATGTGTGCCACTTTTGCCACCAGAT--TTTTAGGAGATTTTTTAGGAAGATATTTGTATGAACTTTTTTTGGGGGA
TTTGAATCAAGCTTCTGAATTATAAACCGTTTTCACTGTTGACTTCCTTGCACGATATCTTCAAAACTAAATCACACGTC
GTGTCTTCTCTACACCTTGCCTGGTCGGAAGTCAGGTATGAGTGATGACACACATTAGAGAGCTTGTGGTATTTGTGTCC
CTAGAATCTTCGGCCCTAGATCTGGGGTTGTTTTTGGCGCTTCGTCCTGTCATGTCTATAGTGGTCGTAAGTATGATGT-
-CAATTTGCTTTAGTTAGTGTCTCTCCCATATCACCTTTTTTACGATGTCGGCATTCTTTCTCAACCGTATGACAATGAA
GCAACGGTTCAATATTGTAAAATCCTACTTCAAACTGGGCGTCGTCTGTTTATTTCTTTGACCTGAGGGTTAGAGAAAAT
TGGAGATGTAACAGGGTAAGCTAGGGAGAATGATTTGACGTGCTTCTAATGTGAACTTTAGTTTTTCTATCAAAGGTAGT
CATTGTCTTTTTTTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTTA
CTGAAGTGTAACCATGATTACAAGACAAAATTACATATATAGAATGTTCGCACATGCGGAGAGGTATAGCCAACGTCCTC
ATCGGTGGAACTAGATCTTCGGTGACGGTAACACTATGAATATCGTAAGTAGGCTAGAAGGCCTTATGTTGCATGCACTG
AGGGGAGGGGGTAACACACAACCCCAAAGATCTGCAATC
>chr7A_726
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--------TAATAACAACAGTCTGTTAATATGTATGATGGTTATATTTTGTGGTTTGCACATGATACTTTCCAGTGCCCT
TACTAATC----TTTAGGTTACAGTCTGACGAAAGATGTTACTCTGTTTGGCTAAAAATATTTAATGATATATTGTTTGT
TTTTGCTCATTTTGAAGATTTGAACTAGAACTCTTCCAAATTTTGAATTTCTTACTTGCCCCTTTTATCCTGGTTGCAGG
AGCAGAAACCAATCAATTTACAGGAAGCCGGAAGCATTTTCATAAAGAGGGAATATCATGGCTACTAAGGAGTTACCGAT
GAAGCTCCTGGTTGATACCAGGGCTCAGAAAGTCTGCTTTCCCGAGGATGACAATGAAGTCGTCGAGTCCCTGTCCAGCC
TCCTATGCATCCCTATGAGCACCGTCATCAACCTGCTTACCAAAGAGCATATGGTTGGCAGCATCGGAAATGTCCTTGAT
AGCTTGGAGACGCTTGATGCCAAGTATATATGCTCAGGCAAGATCAAGGAGCCCTTCATCAGCCCAACAATTTCCCCCGC
TATGCTCTATCCCTTGCAAGAGCTACTGGGGG------------------------------------------------
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>SNPs
-------------------------S-S---------------------------S------------------------
--S---------S---S------------------------------------------------------S---SS---
----------S-------------S-----------------------------S-------------S-----------
---S------------------S---------------------------------------------------------
---------------------------------------------------------------------S----------
-----------------S-----------------------------------------SS----------S--------
---------------------------------S----------------------------------------------
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----------------------------------------------------S-----------------------S---
----------------------------------------S---------------------------------------
S-------------------------------------------------------------------------------
---------------------------------------------------------------S-------S--------
----------------------S-----S---------------------------------------------------
------------------------------------------------------------S--------S----------
------------------------------------------------------------S------------S------
-------------------------------------S------------------------------------------
---------------------------------------------------------S-------------------S--
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-----------S-S------------------------------------------------------S-----------
-------------------------S-------------S-----S----------------------------------
----------------------------------------------------------------S---------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
------------------------------------------------------------------------------S-
-----------------------S----SSS-------------------------------------------SSS---
------S--------------------S----------------------------------S-----------------
---------------------SS---S--------------S----------------------------S----S----
--------------------------S----------------------------------------------------S
S-----------------------------------S-----------S--S----------------------------
---S----------------------------S----------------------------S------------------
--------------S-----------------S-------------------S------------------------SS-
SS-------SSSSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS----------------------------------------------------------------------------
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--------------------------------------------S---S-------------SS--SSSSS---------
---S--S--------------------------S---------S--------S----------------S--------S-
----------------SS---------------------
>forward_229
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-------------------------------------------------TATCAATAGGATGCCGCGCC-----------
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>reverse_1996
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---------------------------------------------------------------------------ATTGC
ATTGCCTGGCCATTC-----------------------------------------------------------------
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