>input_sequence_68507
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----------------------------------------GTATATGAAGAGTTGCACGCACAACTCCCGACTGCCCAAG
CCCTAAAACCAGTGATCACCGGAGCCGACCGGCGCCTAGCTAGGAGGGATCGACGCTGACGAACGCGCCATCTGCCGGTC
AATGTCGGTTCCGTGGGAGCAGCGGAGCTTCTCCGAATCCAAGTCGCCGTACGGTCAGCTCGTCACCCTCGTCGTCAAGG
ACGAGGCGGGCCGCAGGCTCACGCGCACCATGAGGAAAACCGACAACCTGCAGGTTCTCGTCGACTTCTACTACAACACC
ATGGCGCCCGTCGTCGAGCGCGGCTCGGGGGTTTTCGAGTACCGCGGCACGCAGATTGTGTTTCCCCGGCAGCAGGTGCC
GGTGGAGTTTGACATGAAGGACGGCGACGTCGTCGACTTCGTCCCGGTGGTCAAGCCGCACACGCTCGTCACCCCCGTGC
TCAAGGAGCGCTACGAGGAATCGCGCAGCTTCGCCTGCACCGTGCGGAGGACCGACCAGCTCAAGGGCTTGATGTCTTTC
TACCTCAGGACGGCGCTAAAGGCTGGAGCTGTTTTTGAGTTGGACGGCGGACGTCTTGTAGGCGATGAGACGCCGGCGGA
CTTGCAGCTTGAGGATGGGGCAATCATCCACGTTTCTCCAGCTTGATATGTTTTATATCGTTCAATCCACCCCCACCCCG
CGAGCACGTGGGCCTATTGGTTTCCATACAAGTATGTTTCTTGTTGCATGCATTTTCTTGGTTATAATTTCGTTTGGGAG
CTTACTTTATTATTAGTTAACATGTTATTTTTGTGAGGA-----------------------------------------
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-------------------------------------------------------
>chr3D_1_TraesCS3D01G021500
AGGGTGTTGGTTGATACATAACCATGAATCAATGTAGCTGTTAAGAAACCTTCTAGAAGCAGTGATTGGAGTTGCTGGTT
TTTTATGAGTAACTTCATTACGCACATGCCAAATCCTCCATAGCATCATCAGGACAGGGAGCCGACTATCATTAGGGCAC
TTGTGAACAAGATGTAGCAGCCACTCCGTCCCGGTGTTATTTATCTCCTCCAGCCTCGGCATCGCCTGCCAAAGACCATG
CGCCAAAGGACATCTGCAGAATGTGTGGAACGTGGCTATTTTTTGTAGGTGTAAGATTTTCGAATGGAGGGTGTGCACAC
TCCTTCAAATAAAATACTACCCAATCCATGTGTCATATAATATATAGAAAAAAGTAATATAAATACCTCAATCAAGTCTC
ACAACATTCTAGTTCAGAAAATATATTCCAAATTTGCAAAACTACAATACATACAAATAGTCTTACATGAAAGATACAAA
AGTAGAATATTACAACACATGCAACTCAACTGTTTTGCATTGCCATAAAAGTTTCAACTATGTCATCTTCGGTTCTTAGA
ACACATCTCATTCAATAAATGGCGCTAAACAATAGTTCAAGAGACCACTCGCAGTATTTCTCAACTTACTTACTAAATTC
ACTGTGAAAACACTCATGTATCCATAGGAGGCAGAGCTGCAGCTGCCGCCCGTATCCGAAGCCGGGCACGGAGATATGGA
CATCTTCGACGAGGACTAGGGTAGTTTTTTTTTGAGTGTGAGGACTAGGGTAGTTGATATATGTAGTACGTGGATTTATT
TTTTCTTTACATGCTTTTGTATGAATTTGAGATTTTTAGTATGAGGTATCTGGATGCATATGAGGAAATTTGATGTGTGA
CCGTTTTTAGAAAAAGGAAAACCGTGTGTTGAGCTAAAAAGAAGTTTGGGTCGTGGCCGTTTATGTGTGCTATATCGAAC
CGGAGACAGAGAAAAGAACGGGACAACGCACAACTTTTTCGTATATGAAGAGTTGCACGCACAACTCCCGACTGCCCAAG
CCCTAAAACCAGTGATCACCGGAGCCGACCGGCGCCTAGCTAGGAGGGATCGACGCTGACGAACGCGCCATCTGCCGGTC
AATGTCGGTTCCGTGGGAGCAGCGGAGCTTCTCCGAATCCAAGTCGCCGTACGGTCAGCTCGTCACCCTCGTCGTCAAGG
ACGAGGCGGGCCGCAGGCTCACGCGCACCATGAGGAAAACCGACAACCTGCAGGTTCTCGTCGACTTCTACTACAACACC
ATGGCGCCCGTCGTCGAGCGCGGCTCGGGGGTTTTCGAGTACCGCGGCACGCAGATTGTGTTTCCCCGGCAGCAGGTGCC
GGTGGAGTTTGACATGAAGGACGGCGACGTCGTCGACTTCGTCCCGGTGGTCAAGCCGCACACGCTCGTCACCCCCGTGC
TCAAGGAGCGCTACGAGGAATCGCGCAGCTTCGCCTGCACCGTGCGGAGGACCGACCAGCTCAAGGGCTTGATGTCTTTC
TACCTCAGGACGGCGCTAAAGGCTGGAGCTGTTTTTGAGTTGGACGGCGGACGTCTTGTAGGCGATGAGACGCCGGCGGA
CTTGCAGCTTGAGGATGGGGCAATCATCCACGTTTCTCCAGCTTGATATGTTTTATATCGTTCAATCCACCCCCACCCCG
CGAGCACGTGGGCCTATTGGTTTCCATACAAGTATGTTTCTTGTTGCATGCATTTTCTTGGTTATAATTTCGTTTGGGAG
CTTACTTTATTATTAGTTAACATGTTATTTTTGTGAGGAGTAAACATGTGATGTGAATTACTTGGACGTGGTACGTAGTT
TAACCATGTCAAGACTTAATTTGCTTGGTTGATTTAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACACTATGCATG
GCTTTGTATATAAAAGTTGTACTATCCATCTGCCATCACTCGATCACCTCAATTGGAATTCTTGTTAGCCTATGCGTGCT
GCTATCAAGTAATTATTGTTCGGATTTGCTAAAACTCAGCTAGATGAGTTTTAGTTATGTCTCATCCACTTTTGTGACCG
TTGGATGTATATATACCCTAGAT---------------GTTTGGCTGCTTTTGTATCAGGCTCTCTGCAGTTTTGTGTTG
TAGTCATTCGTTGCCAGGCCGACAGGCCTTTCTTTGTTTTGTTTTTGTTTTTTGTTTTTTTC------------GGTGAA
GGCCGGCAGGCCTTTCTTTGTAATATCTTTTTTCTTTCACTGGTTCAACGATGGACTATTTATTGTACAGATTTGCTATT
TCATATCTAGATGTGAAATAGTCCAGAACCGTTGGATCATCTGTCTTTAATATTCGTGCAAAACGCAATTGTCTGGTTGC
TGCGTTGTCTCGCGCTGTGCCTGTGTCCGAGTCGTTGCTAGCTGTGCTTGTGTGCGGGTCGTTGCTAGTGCGAGGTCGCT
CCGTTAGTTTTT---ACAAGCCTATGCTCTTGAAGGTCGTTGCAAGTGTGAGGTTGATTGACTTTTTCTATTTCTTTTCA
CAAGTCTGTGCTGCATTCAGTCCTAGTTCTTCTCATTTTTCTACACTCTCATTTGACTCTTAGTATTTGTTATTTTTTGT
TTCCGTTTTATTTTCCTTTTTATTTTATTTTTTATATTCATTATTTATTTTAAATTGTGAACTATTTTAAATTCATGA-T
TTTTTG-TTTTTG-----TGTTTATTTATATTTTCTATTTTC-------ACCTTTTCCATTTTTATTTTTCCTTTTATTA
TTT------------ATTTATTCGTTTATAATTCATGAACTTGTTTTCACTCTGT
>chr3A_898
AAAAGCCGTGTGT-------------------------------------------------------------------
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--------------------------TGTTCAGTTAAAAAAAAGTTTGGGTCGTGGCCGTTTATGTGTTCTAAATCGAAC
CGGAGACACAGAAAAGAACGGGACGAACTGTTTTCCGTA--TATATGAAGAGTTGCACGCACAACTCCCACCTGCCCAAG
CCCTGAAACCAGTGATCACCGGAGCCGACCGGCGCCTAGCTAGCAGGGATCGACGCCGAGGACTACTACACCGGCCAGGC
AATGTCGATTCCGTGGGATTGGCGGAGGTTCTCCAAATCGACGACGCCGTACAGTCAGTTCGTCACCCTCGTCGTCAAGG
ACGAGGCGGGCCGCAGGCTCACGCGCACCATGAGGAAAACCGACAACCTGCAGGTTCTCGTCGACTTCTACTACAACACC
ATGGCGCCCGTCGTCGAGCGCGGCTCAGGGGTTTTCGAGTACCGCGGCACGCAGATTGTGTTTCCCCGGCAGCAGGTGCC
GGTGGAGTTCGACATGAAGGACGGCGACGTCGTCGACTTCGTCCCGGTGGTCAAGCCGCACACGCTCGTCACCCCCGTGC
TCAAGGAGAGCTGCGAGGAATCGCGCAGCTTCGCCTGCACCGTGCGGAGGACCGACGAGCTCAAGGGCTTGATGTCTTTC
TACTGCTCGACGGCGCGAAAGTTTGGAGCTGTTTTTGAGTTGGACGGCAGACGTCTTGTAGGAGACGAGACGCCGGCGGA
CTTGCAGCTTGAGGATGGGGCAAGCATCCACGTTTCTGAACCTTGA----------------------------------
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>chr1A_2013
TTATATATTG----------------------------------------------------------------------
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--------------------CGGATTTGCTAAAACCCAACTAGATGAGTTTTAGTTATGTCTCATTCACTTTTGTAACCG
TTGGATGTATATATACCCTAAGATTCGTACATTTTCGCGTGTGGCTGCTTTTGTATTGGGCTCTCTGCAGTTTTGTGTTG
TAGTCGTTCGTTGCCAGGCTGACAGGCCTTTCTTTTTTTTG--------------------C------------GGTGAA
GGCCAGCAGGCATTTCTTTGTATTATCTTTTTTC-TTCACTGGTTCAACGATGGACTATTTATTGTATGGTTTTGCTATT
TCACATCTA----------AGTCCAGAACAGTTGGATCATCTGTCTTTAATATTCGTGCAAAACGCAATTGTCTGGTTGC
TACGCTGGCTCGCGGCACGT-TGTGTCCGGGTCGTTGCTAGTTGTGCTTGTGTATGGGTCGTTGCTAGTGCGAGGTCGCT
TTGTTAGTA-TC---ACAAGCCTATGCTCTTGAAGGTCGTTGCTAGTGTGAGGTCGATTGACCTTTTCTATTTATTTTCA
CAAGTATGTGCTGCATTCAGTCCTAGTTCCTCTCATTTTTCTACACTCCCATTTGACTCCTAGTATTTGTTATTTTTT--
--------------CCATTTTATTTTACTTTTTCTATTCATTATTTATTTTTAATTATGAACTATTTTAAATTCTTGA-T
TTTTTT-TTTGCTTTTATTTATATTTTATATTTTCTATGTTC-------ACCTTTTCCATTTTTATTATT----------
--T------------ATTTATTCATTTAAAATTCATGAAATTGTTTTCACTCTGT
>chr7D_2015
ATAGTA--------------------------------------------------------------------------
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--------------------CGGATTTGCTAAAACTCAGCTAGATGAGTTTTAGTTATGTCTGATTCACTTTTGTGACCG
TTGGATGTATATATACCCTAAGATTCGTACATTTTCGCGTGTGGCTGCTTTTGTATCGGGCTCTCTGCAATTTTGTGTTG
TAGTCATTCGTTGCCAGGCCGACAGGCCTTTCTTTGTTTTG--------------------CTTTTTTTTTTGCGGTGAA
GGCCGGCAGGCCTTTCTTTGTAATATC-TTTTTT-TTCACTGGTTCAACGATGGACTATTTATTGTATAGGTTTGCTATT
TCACATCTAGAT-TGAAATAGTCCAGAACCGTTGGATCATCTGTCTTTAATATTCGTGCAAAACGCAATTGTCTGATTGC
TGCGTTGTCTCGCTCTGTGCCTGTGTCCGAGTCGTTGCTAGCTGTGCTTGTGTGCGGGTCGTTGCTAGTGCGAGGTCGCT
CCGTTAGTTTTC---GCAAGCCTATGCTCTTGAAGGTCGTTGCAAGTGTGAGGTCGATTGACTTTTTCTATTTCTTTTCA
CAAGTCTGTGCTGCATTCAGTCCTAGTTCCTCTCATTTTTCTACACTCTCATTTGACTCCTAGTATTTGTTATTTTTTGT
TTCCGTTTTATTTTCCTTTTTATTTTATTTTTTCTATTCATTCTTTATTTTAAATTGTGAACTATTTTAAATTCATGA-T
TTTTTG-TTTTTG-----TTTTTATTTATATTTTCTATTTTCTATTTTCACCTTTTCTATTTTTATGTTT----------
--TATTTTATTATTTATTTATTCGTTTATAATTCATGAACTTGTTTTCACTCTGT
>chr6D_2020
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-------------------TCGGATTTGCTAAAACTCAGCTAGATGAGTTTTAATTTTGTCTCATTCACTTTTGTAACCG
TTGGATGTATATATACCCTAAGATTCGTACATTGTGGCGTGTGGCTGCTTTTGTATCGGGCTGTCTGCAGTTTTGTGTTG
TAGTCGTT-------AGGCCCACAGGCCTTTCTTTGTTTGTTTGG--------------------TTTTTTTGCGGTGCA
AGCCGGCAGACCTTTCTTTGTAATATCTTTTTTT-TTCACTGGTTCAGCGATGGACAATTTATTGTACGGGTTTGTTATT
TCACATCTA----------AGTCCAAAACCGTTGGATCACCTGTTTTTAATATTCGTGCAAAACGCAATTGTCTAGTTGC
TGCGCTGGCTCGTGGCGCGT-TGTGTCCGGGTTGTTGCAAGCTGTGCTTGTGTAGGGGTCGTTGCTAGTGCGAGGTCGCT
CCGTTAGTA-TC---ACAAGCCTATGCTCTTGAGGGTCGTTGCTAGTGTGAGGTCGATTGACCTTTTCTATTTCTTTTCA
CAAGTCTGTGCTGCATTCAGTCCTAGTTCCTCTCATTTCTCTACACTCTCATTTGACTCCTAGTATTTGTTATTATTTTC
T---G------------TTTTATTTTATTTTTTCTATTCATTATTTATTTTAAATTATGAACTATTTTAAATTCTTGATT
TTTTTG-TTTTTG-----TTTTTATTTATATTTTCTATTTTC-------CCCTTTTCCATTTTTATTTTT----------
--TATTTTAAAATTTATTTATTCGTTTAAAATTCATGAAATTGTTTTCACTCTGT
>chr6D_2021
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--------------------CGGATTTGCTAAAACTCAGCTAGATGAGTTTTAGTTATGTCTCATTCACTTTTCTGACTG
TTGGATGTATATATACCCTAAGATTCGTACTTTTTCGCGTGTGGCTGCTTTTGTATCGGGCTCT----AGTTTTGTGTTG
TAGTCGTTCGTTGCCAGGCCGACAGGCCTTTCTTTGTTTTG--------------------TTTTGTTTTTTGCGGTGAA
GGCCGGCAGGCCTTTCTTTGTAATATCTTTTTTT-TTCACTGGTTCAATTATGGACTATTTATTGTACAGGTTTGCTATT
TCACATCTAGAT-TGAAATAGTCCAGAACAGTTGGATCATCTGTCTTTAATATTCGTGCAAAACGCAATTGTCTGGTTGC
TACGTTGTCTCGCTCTGTGCCTGTGTCCGAGTCGTTGCTAGCTGTGCTTGTGTGCGGGTCGTTGCTAGTGCGAGGTCGCT
CCGTTAGTTTTC---ACGAGCCTATGCTCTTGAAGGTCGTTGCAAGTGTGAGGTCGATTGACTTTTTCTATTTCTTTTCA
CAAGTCTGTGCTGCATTCAGTCCTAGTTCCTCTCATTTTTCTACACTCTCATTTGACTCCTAGTATTTGTTATTTTTTGT
TTCCGTTTTATTTTCCTTTTTATTTTATTTTTTCTATTCATTATTTATTTTAAATTGTGAACTATTTTAAATTCATGA-T
TTTTTA-TTTTTG-----TTTTTATTTATATTTTCTATTTTCTATTTTCACCTTTTCCATTTTTATGTTT----------
--TATTTTATTATTTATTTATTCGTTTATAATTCATGAACTTGTTTTCACTCTGT
>chr7D_2038
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-------------------------------------AGCTAGATGAGTTTTAGTTATGTCTCATTTACTTTTGTGACCA
TTGGATGTATATATACCCTAAGATTTGTACTTTTTCGCGTGTGGCTGCTTTTGTATCGGGCTCTCTGCAGTTTTGTGTTG
TAGTGGTTCGTTGCCAGGGCGACAGGCTTT--------------------------------------------------
----------------TTTTTAATATC-TTTTTT-TTCACTGGTTCAACGATGGACTATTTATTGTACAGATTTGCTATT
TCACATCTAGAT-TGAAATAGTCCAGAACCGTTGGATCATCTGTCTTTAATATTCGTACAAAACGCAATTGTCTGGTTGC
TACGTTGTCTCGCTCTGTGCCTGTGTCCGAGTCGTTGCTAGCTGTGCTTGTGTGCGGGTCGTTGCTAGTGCGAGGCCGCT
CCGTTAGTTTTC---ACGAGCCTATGCTCTTGAAGGTCGTTGCAAGTGTGAGGCCGATTGACTTTTTCTATTTCTTTTCA
CAAGTCTGTGCTGCATTCAGTCCTAGTTCCTCTCATTTTTCTACACTCTCATTTGACTCCTAGTATTTGTTATTTTTTGT
TTCCGTTTTATTTTCCTTTTTATTTTATTTTTTCTATTCATTATTTATTTTAAATTGTGAACTATTTTAAATTCATGA-T
TTTT-G-TTTTTG-----TTTTTATTTATATTTTATATTTTATATTTTTACCTTTTCCATTTTTATGTTT----------
--TATTTTATTATTTATTTATTCGTTTATAATTCATGAACTTGTTTTCACTCTGT
>chr2A_2243
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-----------------------------TTTTT-TTCACTGGTTCAACGATGGACTATTTATTGTAGGGGTTTGTTATT
TCACATCTA----------AGTCCAGAACCGTTGGATCATCTGTCTTTAATATTCGTGC-AAACGCAATTGTCTGGTTGC
TGTGCTGGCTCGCGGCGCGT-TGTGTCCGGGTCATTGCTAGCTGTGCTTGTGTACGGGTCGTTGCTAGTGCGAGGTCGCT
CCGTTAGTA-TGATGACAAGCCTATGCTCCTGAAGGTCGTTGCTAGTGTCAGGTCGATTGACCTTTTCTATTTCTTTTCA
CAAGTCTGTGCTGCATTCAGTCCTAGTTCCTCTCATTTTTCTACACTCCCATTTGACTCCTAGTATTTGTTATTTTTTGT
TTTCG------------TTTTATTTTATTTTTTCTATTCATTATTTATTTTAAATTATGAACTATTTTAAATTCTTGA-T
TTTTTTGTTTTTG-----TTTTTGTTTTTATTTTTTATTTTATATTTTCACCTTTTCCATTTTTATTTTACTAT------
---------TTATTTATTTATTCGTTTTAAATTCATGGAATTGTTTTCATTCT--
>SNPs
-SS--SS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS----S--S------S---------------------------S---S-------
--------S---------------S-SSSSSSSSSSS-SSS----------------------------SS---------
----S--------------------------------------S------------S--S--SSS-SS--S-S---S-S-
-------S----------SSS------S------S----S-S-S--------S-----S---------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
---------S----------------------------------------------------------------------
--------S---S-------------------------------------------S-----------------------
---SS-SS--------S----SS-------------------------S-------------S--S--------------
-----------------------S-------------SS-S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS----------------------------------------------S--------------
--------------------SSS-----------------S----------------S----------------------
-------------------------------------------SSSSSSSSSSSSSSSSSS-------------------
----------------------------------S---------------------------------------------
---S--------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S------------------------------------------S-------------------------
-----------------------------S-----------------------------S--------------------
---------------------------------S----------------------------------------------
-------------------S---------------------------------------------------SS-SSSSSS
SS-----------------------------------------------------
>forward_256
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----------------------------------------------------------------------------CATG
CGCCAAAGGACATCTG----------------------------------------------------------------
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>reverse_1657
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--------------------------------------------------------ATCGTTCAATCCACCCCCAC----
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-------------------------------------------------------
>forward_277
--------------------------------------------------------------------------------
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-----------------AGAATGTGTGGAACGTGGCT-------------------------------------------
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>reverse_1987
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------------------------------------------------------------------AGCCTATGCGTGCT
GCTATC--------------------------------------------------------------------------
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-------------------------------------------------------
